These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9454#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1261 fasta sequence [GGCCATGTCCCAAGTGGATAGACGGTCCTGATCTTCTGCCGTGCTGTTCTGCTGGTGTTGCCGCATAACCCACGGCGGCGGCGCGTAGGCAAAGCCGGGAGGAAGGATTAGGGTTTAGGCGGCGGCCATGGCAGCTGAGGAGCAGACTCCGCGAACCAAACCCAGCACCGGGAACAGCAAGAAGAGGAAGAAGCCCAGGAAGGACAAGTGGGGCCAGCCTATCATCGACGCCGGCGATCGCCCGGCGGTTGAGCCGGAGC-CTGAGCCAGAGCCGGAGCCTGTCCCAGCGCCCGCAGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGGCGGGGATCTATGAAACCGGCAAGGTGGTGGCCAGCGGCCTGCCGTACACCACCACCGAGGCGGAGATCCGGGAGCTCTTCGAGCGGTTCGGTCCCCTCCGGTCGCTCCAGCTCTCTCGCTTCCCGGACTCCGGCAACTTCCGCGGCCTCGCGTTCGTCTCCTTCGAGTCAAACGAGGTGGTAATGAAGTCTCTTGAGCTTGACGGATTCAAAATTGGCAACAGGTTTATGAGAGTTGAAAGATGCAGGTTGGCTGCTGGCTCGAAGAGGAAAAGGACTGTGGAGTTCCAAACTGATCCTAAGAAGGCTGATGGGTGTCTGTCAGCATATGTTGGCAATCTCAAATGGGATGTTACAGAAACAGACTTAAGGGACTTCTTCAAGTCACTGAAGATTTCATCGATAAGGTTTGCTATCAACAAGAGAACAGGTGATTCTCGTGGTTTTTGTCATGTTGATTTTGAGGACGACGAGTCGCTTGAGAAGGCTGTAGGAATGAATCAATCTGAACTGCGCGGCCGACCTATCAAGATATCATATGCTGTCAGTAACAGGGGCTGAAGGCTACTAGATAGTAAACTTTGAGCATGAGCGAGCCTCAGTGTTATGCTTTTGCTCCCTCAGTTTTGTTACGGTTATATATCCGTATTAAGTTTCTACTGAAAGTGTTGTTTCTTGCATCAATCTCTATGTAGAATGTAATTCACCGTGTGACAAATACTTGGTGCTACTTAATATCGACCTTATAAAAAAGAAACAGAAATCTCTGTCAAATATAACTATCTGGTCATAGCAGTGGCGACTGATGTTGGAATGTTGTCTCATTGAGTTTGATGTCGAGGGCCTAAAGTTAGTAATTGTTGAGCTCAGAACTAAACCTAATCTTTTAGAGTATTATATCCCATCTGAATAGACGTTCTTTAACTAGAAAAAAAA] [+] EMBL AK066740 [GGCCATGTCCCAAGTGGATAGACGGTCCTGATCTTCTGCCGTGCTGTTCTGCTGGTGTTGCCGCATAACCCACGGCGGCGGCGCGTAGGCAAAGCCGGGAGGAAGGATTAGGGTTTAGGCGGCGGCCATGGCAGCTGAGGAGCAGACTCCGCGAACCAAACCCAGCACCGGGAACAGCAAGAAGAGGAAGAAGCCCAGGAAGGACAAGTGGGGCCAGCCTATCATCGACGCCGGCGATCGCCCGGCGGTTGAGCCGGAGC CTGAGCCAGAGCCGGAGCCTGTCCCAGCGCCCGCAGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGGCGGGGATCTATGAAACCGGCAAGGTGGTGGCCAGCGGCCTGCCGTACACCACCACCGAGGCGGAGATCCGGGAGCTCTTCGAGCGGTTCGGTCCCCTCCGGTCGCTCCAGCTCTCTCGCTTCCCGGACTCCGGCAACTTCCGCGGCCTCGCGTTCGTCTCCTTCGAGTCAAACGAGGTGGTAATGAAGTCTCTTGAGCTTGACGGATTCAAAATTGGCAACAGGTTTATGAGAGTTGAAAGATGCAGGTTGGCTGCTGGCTCGAAGAGGAAAAGGACTGTGGAGTTCCAAACTGATCCTAAGAAGGCTGATGGGTGTCTGTCAGCATATGTTGGCAATCTCAAATGGGATGTTACAGAAACAGACTTAAGGGACTTCTTCAAGTCACTGAAGATTTCATCGATAAGGTTTGCTATCAACAAGAGAACAGGTGATTCTCGTGGTTTTTGTCATGTTGATTTTGAGGACGACGAGTCGCTTGAGAAGGCTGTAGGAATGAATCAATCTGAACTGCGCGGCCGACCTATCAAGATATCATATGCTGTCAGTAACAGGGGCTGAAGGCTACTAGATAGTAAACTTTGAGCATGAGCGAGCCTCAGTGTTATGCTTTTGCTCCCTCAGTTTTGTTACGGTTATATATCCGTATTAAGTTTCTACTGAAAGTGTTGTTTCTTGCATCAATCTCTATGTAGAATGTAATTCACCGTGTGACAAATACTTGGTGCTACTTAATATCGACCTTATA ] [+] EMBL AU068512 [ GCAAAGCNGGGAGGAAGGATTAGGGTTTAGGCGGCGGCCATGGCAGCTGAGGAGCAGACTCCGCGAACCAAACCCAGCACCGGGAACAGCAAGAAGAGGAAGAAGCNCAGGAAGGACAAGTNGGGCCANCNTATCATCGACGCCGNCGATCGCCCGNCGGTTGAGCCGGAGCNTTTAGCCANAGCCGGAG ] [+] EMBL CB677347 [ GGTTTAGGCGGCGGCCATGGCAGCTGAGGAGCAGACTCCGCGAACCAAACCCAGCACCGGGAACAGCAAGAAGAGGAAGAAGCCCAGGAAGGACAAGTGGGGCCAGCCTATCATCGACGCCGGCGATCGCCCGGCGGTTGAGCCGGAGC CTGAGCCAGAGCCGGAGCCTGTCCCAGCGCCCGCAGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGGCGGGGATCTATGAAACCGGCAAGGTGGTGGCCAGCGGCCTGCCGTACACCACCACCGAGGCGGAGATCCGGGAGCTCTTCGAGCGGTTCGGTCCCCTCCGGTCGCTCCAGCTCTCTCGCTTCCCGGACTCCGGCAACTTCCGCGGCCTCGCGTTCGTCTCCTTCGAGTCAAACGAGGTGGTAATGAAGTCTCTTGAGCTTGACGGATTCAAAATTGGCAACAGGTTTATGAGAGTTGAAAGATGCAGGTTGGCTGCTGGCTCGAAGAGGAAAAGGACTGTGGAGTTCCAAACTGATCCTAAGAAGGCTGATGGGTGTCTGTCAGCATATGTTGGCAATCTCAAATGGGATGTTACAGAAACAGACTTAAGGGACTTCTTCAAGTCACTGAAGATTTCATCGATAAGGTTTGCTATCAACAAGAGAACAGGTGATTCTCGTGGTTTTTGTCATGTTGATTTTGAGGACGACGAGTCGCTTGAGAAGGCTGTAGGAATGAATCAATCTGAACTGCGCGGCCGACCTATCAAGATATCATATGCTGTCAGTAACAGGGGCTGAAGGCTACTAGATAGTANACTTTGAGCATGA ] [-] EMBL CB677348 [ TTGAGCCGGAGC CTGAGCCAGAGCCGGAGCCTGTCCCAGCGCCCGCAGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGGCGGGGATCTATGAAACCGGCAAGGTGGTGGCCAGCGGCCTGCCGTACACCACCACCGAGGCGGAGATCCGGGAGCTCTTCGAGCGGTTCGGTCCCCTCCGGTCGCTCCAGCTCTCTCGCTTCCCGGACTCCGGCAACTTCCGCGGCCTCGCGTTCGTCTCCTTCGAGTCAAACGAGGTGGTAATGAAGTCTCTTGAGCTTGACGGATTCAAAATTGGCAACAGGTTTATGAGAGTTGAAAGATGCAGGTTGGCTGCTGGCTCGAAGAGGAAAAGGACTGTGGAGTTCCAAACTGATCCTAAGAAGGCTGATGGGTGTCTGTCAGCATATGTTGGCAATCTCAAATGGGATGTTACAGAAACAGACTTAAGGGACTTCTTCAAGTCACTGAAGATTTCATCGATAAGGTTTGCTATCAACAAGAGAACAGGTGATTCTCGTGGTTTTTGTCATGTTGATTTTGAGGACGACGAGTCGCTTGAGAAGGCTGTAGGAATGAATCAATCTGAACTGCGCGGCCGACCTATCAAGATATCATATGCTGTCAGTAACAGGGGCTGAAGGCTACTAGATAGTAAACTTTGAGCATGAGCGAGCCTCAGTGTTATGCTTTTGCTCCCTCAGTTTTGTTACGGTTATATATCCGTATTAAGTTTCTACTGAAAGTGTTGTTTCTTGCATCAATCTCTATGTAGAATGTAATTCACCGTGAGGCAAATACTTGGTGCTACTTAATATCGACCTTATCAAAAAGAAA ] [+] EMBL AU181482 [ TGTAGGAATGAATCAATCTGAACTGCGCGGCCGACCTATCAAGATATCATATGCTGTCAGTAACAGGGGCTGAAGGCTACTAGATAGTAAACTTTGAGCATGAGCGAGCCTCAGTGTTATGCTTTTGCTCCCTCAGTTTTGTTACGGTTATATATCCGTATTAAGTTTCTACTGAAAGTGTTGTTTCTTGCATCAATCTCTATGTAGAATGTAATTCNCCGTGTGACAAATACTTGGTGCTACTTAATATCGACCTTATAAACACTTCTCAGAAATCTCTGTCAAATATAACTATCTGGTCATAGCAGTGGCGACTGATGTTGGAATGTTGTCTCATTGAGTTTGATGTCGAGGGCCTAAAGTTAGTAATTGTTGAGCTCAGAACTAAACCTAATCTTTTAGAGTATTATATCCCATCTGAATAGACGTTCTTTAACTAGAAAAAAAA] consensusID : consensus_9454#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 976 fasta sequence [CCTGAAGTTTGATACCTGGGGGGGGAAAACGGGAGAATGGTTTGCGCCTTCAATAAGAAACCCACACAACAGCCCGACACAAAAAGAAACCCGAGGCAAGGGGCACCTTATAACCGGATTCCCGGGTAACGAGCTAACAAACGGACTGTCCAGGCCTTTTGCGCGCGGGGAGAAGAGAAAAGCGGGATTAATAACGGCAAGTGGGGGCACGGCCTCCGACACCCCCACGAGGGAAGACCGGAGCTCTTCGAGCGGTCGGGCCCCTCGGTGGTCCAGGTTTTTGCTTTCCGGACTCGGCAAATTCCGCGGCCTCGGGGTTGTCTCCTTCGAGTCAAACAAGGTGGCAATGAAGTCTCTTGAGCTTGACGGATTCCAAATTGGCAACAGGTTTATGAAAGTTGAAAGATGCAGGTTGGCTGCTGGCTCGAAGAGGAAAAGGACTGTGGAGTTCCAAACTGATCCTAAGAAGGCTGATGGGTGTCTGTCAGCATATGTTGGCAATCTCAAATGGGATGTTACAGAAACAGACTTAAGGGACTTCTTCAAGTCACTGAAGATTTCATCGATAAGGTTTGCTATCAACAAGAGAACAGGTGATTCTCGTGGTTTTTGTCATGTTGATTTTGAGGACGACGAGTCGCTTGAGAAGGCTGTAGGAATGAATCAATCTGAACTGCGCGGCCGACCTATCAAGATATCATATGCTGTCAGTAACAGGGGCTGAAGGCTACTAGATAGTAAACTTTGAGCATGAGCGAGCCTCAGTGTTATGCTTTTGCTCCCTCAGTTTTGTTACGGTTATATATCCGTATTAAGTTTCTACTGAAAGTGTTGTTTCTTGCATCAATCTCTATGTAGAATGTAATTCACCGTGTGACAAATACTTGGTGCTACTTAATATCGACCTTATAAACACTTCTCAGAAAAAAAAAAAAAAAAAAAAAAAAAAGTCGAGACTAGTTCTCCCTCTCTCTCT] [-] EMBL BE040712 [CCTGAAGTTTGATACCTGGGGGGGGAAAACGGGAGAATGGTTTGCGCCTTCAATAAGAAACCCACACAACAGCCCGACACAAAAAGAAACCCGAGGCAAGGGGCACCTTATAACCGGATTCCCGGGTAACGAGCTAACAAACGGACTGTCCAGGCCTTTTGCGCGCGGGGAGAAGAGAAAAGCGGGATTAATAACGGCAAGTGGGGGCACGGCCTCCGACACCCCCACGAGGGAAGACCGGAGCTCTTCGAGCGGTCGGGCCCCTCGGTGGTCCAGGTTTTTGCTTTCCGGACTCGGCAAATTCCGCGGCCTCGGGGTTGTCTCCTTCGAGTCAAACAAGGTGGCAATGAAGTCTCTTGAGCTTGACGGATTCCAAATTGGCAACAGGTTTATGAAAGTTGAAAGATGCAGGTTGGCTGCTGGCTCGAAGAGGAAAAGGACTGTGGAGTTCCAAACTGATCCTAAGAAGGCTGATGGGTGTCTGTCAGCATATGTTGGCAATCTCAAATGGGATGTTACAGAAACAGACTTAAGGGACTTCTTCAAGTCACTGAAGATTTCATCGATAAGGTTTGCTATCAACAAGAGAACAGGTGATTCTCGTGGTTTTTGTCATGTTGATTTTGAGGACGACGAGTCGCTTGAGAAGGCTGTAGGAATGAATCAATCTGAACTGCGCGGCCGACCTATCAAGATATCATATGCTGTCAGTAACAGGGGCTGAAGGCTACTAGATAGTAAACTTTGAGCATGAGCGAGCCTCAGTGTTATGCTTTTGCTCCCTCAGTTTTGTTACGGTTATATATCCGTATTAAGTTTCTACTGAAAGTGTTGTTTCTTGCATCAATCTCTATGTAGAATGTAATTCACCGTGTGACAAATACTTGGTGCTACTTAATATCGACCTTATAAACACTTCTCAGAAAAAAAAAAAAAAAAAAAAAAAAAAGTCGAGACTAGTTCTCCCTCTCTCTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9454#0 GGCCATGTCCCAAGTGGATAGACGGTCCTGATCTTCTGCCGTGCTGTTCTGCTGGTGTTG 60 consensus_9454#1 ------------------------------------------------------------ consensus_9454#0 CCGCATAACCCACGGCGGCGGCGCGTAGGCAAAGCCGGGAGGAAGGATTAGGGTTTAGGC 120 consensus_9454#1 ---------------------------------------------CCTGAAGTTTGATAC 15 * * * ** * * consensus_9454#0 GGCGGCCATGGCAGCTGAGGAGCAGACTCCGCGAACCAAACCCAGCACCGGGAACAGCAA 180 consensus_9454#1 CTGGGGGGGGAAAACGGGAGAATGGTTTGCGCCTTCAATAAGAAACCCACACAACAGCCC 75 ** * * * * ** * * *** * * * * * * ****** consensus_9454#0 GA-AGAGGAAGAAGCCCAGGAAGGACAAGTGGGGCCAGCCTATCATCGACGCCGGCGATC 239 consensus_9454#1 GACACAAAAAGAAACCCG----AGGCAAGGGG---CACCTTATAACCG--------GATT 120 ** * * ***** *** * **** ** ** * *** * ** *** consensus_9454#0 GCCCGGCGGTTGAGCCGGAGCCTGAGCCAGAGCCGGAGCCTGTCCCAGCGCCCGCAGCGG 299 consensus_9454#1 -CCCGGGTAACGAGCTA-----------ACAAACGGA--CTGTCCAGGC--CTTTTGCG- 163 ***** **** * * **** ****** ** * *** consensus_9454#0 CGGCGGCGGCGGAGGAGGAGGAGGAGGCGGGGATCTATGAAACCGGCAAGGTGGTGGCCA 359 consensus_9454#1 ---------CGCGGGGAGAAGAGAAAAGCGGGATTAATAA---CGGCAAG-TGGGGGC-- 208 ** ** ** *** * ***** ** * ******* *** *** consensus_9454#0 GCGGCCTGCCGTACACCACCACCGAGGCGGAGATCCGGGAGCTCTTCGAGCGGTTCGGTC 419 consensus_9454#1 ACGGCCT-CCG-ACACCCCCAC-GAGG-GAAGACC--GGAGCTCTTCGAGCGGTCGGGCC 262 ****** *** ***** **** **** * *** * ***************** ** * consensus_9454#0 CCCTCCGGTCGCTCCAGCTCTCTCGCTTCCCGGACTCCGGCAACTTCCGCGGCCTCGCGT 479 consensus_9454#1 CCT--CGGT-GGTCCAGGTTTTT-GCTTTCCGGACTC-GGCAAATTCCGCGGCCTCGGGG 317 ** **** * ***** * * * **** ******** ***** ************* * consensus_9454#0 TCGTCTCCTTCGAGTCAAACGAGGTGGTAATGAAGTCTCTTGAGCTTGACGGATTCAAAA 539 consensus_9454#1 TTGTCTCCTTCGAGTCAAACAAGGTGGCAATGAAGTCTCTTGAGCTTGACGGATTCCAAA 377 * ****************** ****** **************************** *** consensus_9454#0 TTGGCAACAGGTTTATGAGAGTTGAAAGATGCAGGTTGGCTGCTGGCTCGAAGAGGAAAA 599 consensus_9454#1 TTGGCAACAGGTTTATGAAAGTTGAAAGATGCAGGTTGGCTGCTGGCTCGAAGAGGAAAA 437 ****************** ***************************************** consensus_9454#0 GGACTGTGGAGTTCCAAACTGATCCTAAGAAGGCTGATGGGTGTCTGTCAGCATATGTTG 659 consensus_9454#1 GGACTGTGGAGTTCCAAACTGATCCTAAGAAGGCTGATGGGTGTCTGTCAGCATATGTTG 497 ************************************************************ consensus_9454#0 GCAATCTCAAATGGGATGTTACAGAAACAGACTTAAGGGACTTCTTCAAGTCACTGAAGA 719 consensus_9454#1 GCAATCTCAAATGGGATGTTACAGAAACAGACTTAAGGGACTTCTTCAAGTCACTGAAGA 557 ************************************************************ consensus_9454#0 TTTCATCGATAAGGTTTGCTATCAACAAGAGAACAGGTGATTCTCGTGGTTTTTGTCATG 779 consensus_9454#1 TTTCATCGATAAGGTTTGCTATCAACAAGAGAACAGGTGATTCTCGTGGTTTTTGTCATG 617 ************************************************************ consensus_9454#0 TTGATTTTGAGGACGACGAGTCGCTTGAGAAGGCTGTAGGAATGAATCAATCTGAACTGC 839 consensus_9454#1 TTGATTTTGAGGACGACGAGTCGCTTGAGAAGGCTGTAGGAATGAATCAATCTGAACTGC 677 ************************************************************ consensus_9454#0 GCGGCCGACCTATCAAGATATCATATGCTGTCAGTAACAGGGGCTGAAGGCTACTAGATA 899 consensus_9454#1 GCGGCCGACCTATCAAGATATCATATGCTGTCAGTAACAGGGGCTGAAGGCTACTAGATA 737 ************************************************************ consensus_9454#0 GTAAACTTTGAGCATGAGCGAGCCTCAGTGTTATGCTTTTGCTCCCTCAGTTTTGTTACG 959 consensus_9454#1 GTAAACTTTGAGCATGAGCGAGCCTCAGTGTTATGCTTTTGCTCCCTCAGTTTTGTTACG 797 ************************************************************ consensus_9454#0 GTTATATATCCGTATTAAGTTTCTACTGAAAGTGTTGTTTCTTGCATCAATCTCTATGTA 1019 consensus_9454#1 GTTATATATCCGTATTAAGTTTCTACTGAAAGTGTTGTTTCTTGCATCAATCTCTATGTA 857 ************************************************************ consensus_9454#0 GAATGTAATTCACCGTGTGACAAATACTTGGTGCTACTTAATATCGACCTTATAAAAAAG 1079 consensus_9454#1 GAATGTAATTCACCGTGTGACAAATACTTGGTGCTACTTAATATCGACCTTATAA----- 912 ******************************************************* consensus_9454#0 AAACAGAAATCTCTGTCAAATATAACTATCTGGTCATAGCAGTGGCGACTGATGTTGGAA 1139 consensus_9454#1 ----ACACTTCTCAGAAAAAAAAAAAAAAAAAAAAAAAAAAGTCGAGACTAGTTCTCCCT 968 * * **** * *** * ** * * * *** * **** * * consensus_9454#0 TGTTGTCTCATTGAGTTTGATGTCGAGGGCCTAAAGTTAGTAATTGTTGAGCTCAGAACT 1199 consensus_9454#1 CTCTCTCT---------------------------------------------------- 976 * *** consensus_9454#0 AAACCTAATCTTTTAGAGTATTATATCCCATCTGAATAGACGTTCTTTAACTAGAAAAAA 1259 consensus_9454#1 ------------------------------------------------------------ consensus_9454#0 AA 1261 consensus_9454#1 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||