These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9458#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1067 fasta sequence [GAGGATGCCGCCGCCGCCGCCGCCGCGGCGCCGTTCCGCAACAAGGAGAAGGTGCTCGTGACCTGCTCCCGCCGAATCAACTACCGGTATCGGCATCTGATGCAGAACGTGGTGTCGCTGCTGCCGCACGCCAAGAAGGACAGCAAGGTCGAGTCGAAGCAGAGCAAGGGCAATGCGCTCAACGAGCTGCTCGAGCTCAGGAACTGCTCCAGCTGCCTCTTCTTCGAGTGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTTAAGTCCCCTGGAGGACCATCAGTGAAATTTCTAGTTAATGCTGTTCACACCATGGAGGAGTTGAAGCTTACAGGGAACCATCTGAAAGGGTCACGGCCTCTTATAACATTTTCTACAAATTTTGATGAACAACCTCACTGGCAGCTTGTGAAAGAAATGCTAACCCAGATATTTGCTACTCCAAAAGATCATCGAAAGGCAAAGCCTTTTCATGACCATGTGTTTGTCTTCTCTATCGTTGATGACCATGTTTGGTTTAGAAATTATCAGATTTCTGTTCCCCACAATGAGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTCAAGGCTAAGGTGAGGAGGAAGATGCACGAGATGGAGAACACTCTGGAGCCTGATGAATTTGCTGAACTTTGGAAAGGGGAGGACTAGTTCAGCTATAGTGATTGAACCATCAACCCCCGTTAAACTAGTTGCTCTCGCTGTCACCCGACACGAGTTTTGTTTACTATATCTCGTGGAATTTCTTGTATGACACCATGAGTCTATTATTTACATGAATAAGATTTTAGTGTCCTAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK102534 [GAGGATGCCGCCGCCGCCGCCGCCGCGGCGCCGTTCCGCAACAAGGAGAAGGTGCTCGTGACCTGCTCCCGCCGAATCAACTACCGGTATCGGCATCTGATGCAGAACGTGGTGTCGCTGCTGCCGCACGCCAAGAAGGACAGCAAGGTCGAGTCGAAGCAGAGCAAGGGCAATGCGCTCAACGAGCTGCTCGAGCTCAGGAACTGCTCCAGCTGCCTCTTCTTCGAGTGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTTAAGTCCCCTGGAGGACCATCAGTGAAATTTCTAGTTAATGCTGTTCACACCATGGAGGAGTTGAAGCTTACAGGGAACCATCTGAAAGGGTCACGGCCTCTTATAACATTTTCTACAAATTTTGATGAACAACCTCACTGGCAGCTTGTGAAAGAAATGCTAACCCAGATATTTGCTACTCCAAAAGATCATCGAAAGGCAAAGCCTTTTCATGACCATGTGTTTGTCTTCTCTATCGTTGATGACCATGTTTGGTTTAGAAATTATCAGATTTCTGTTCCCCACAATGAGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTCAAGGCTAAGGTGAGGAGGAAGATGCACGAGATGGAGAACACTCTGGAGCCTGATGAATTTGCTGAACTTTGGAAAGGGGAGGACTAGTTCAGCTATAGTGATTGAACCATCAACCCCCGTTAAACTAGTTGCTCTCGCTGTCACCCGACACGAGTTTTGTTTACTATATCTCGTGGAATTTCTTGTATGACACCATGAGTCTATTATTTACATGAATAAGATTTTAGT ] [+] EMBL AK060611 [GAGGATGCCGCCGCCGCCGCCGCCGCGGCGCCGTTCCGCAACAAGGAGAAGGTGCTCGTGACCTGCTCCCGCCGAATCAACTACCGGTATCGGCATCTGATGCAGAACGTGGTGTCGCTGCTGCCGCACGCCAAGAAGGACAGCAAGGTCGAGTCGAAGCAGAGCAAGGGCAATGCGCTCAACGAGCTGCTCGAGCTCAGGAACTGCTCCAGCTGCCTCTTCTTCGAGTGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTTAAGTCCCCTGGAGGACCATCAGTGAAATTTCTAGTTAATGCTGTTCACACCATGGAGGAGTTGAAGCTTACAGGGAACCATCTGAAAGGGTCACGGCCTCTTATAACATTTTCTACAAATTTTGATGAACAACCTCACTGGCAGCTTGTGAAAGAAATGCTAACCCAGATATTTGCTACTCCAAAAGATCATCGAAAGGCAAAGCCTTTTCATGACCATGTGTTTGTCTTCTCTATCGTTGATGACCATGTTTGGTTTAGAAATTATCAGATTTCTGTTCCCCACAATGAGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGGTTGGCCCAAGGTCCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTCAAGGCTAAGGTGAGGAGGAAGATGCACGAGATGGAGAACACTCTGGAGCCTGATGAATTTGCTGAACTTTGGAAAGGGGAGGACTAGTTCAGCTATAGTGATTGAACCATCAACCCCCGTTAAACTAGTTGCTCTCGCTGTCACCCGACACGAGTTTTGTTTACTATATCTCGTGGAATTTCTTGTATGACACCATGAGTCTATTATTTACATGAATAAGAT ] [+] EMBL CB000264 [ CTCCCGCCGAATCAACTACCGGTATCGGCATCCTATGCAGAACGTGGTGTCGCTGCTGCCGCACGCCAAGAAGGACAGCAAGGTCGAGTCGAAGCAGAGCAAGGGCAATGCGCTCAACGAGCTGCTCGAGCTCAGGAACTGCTCCAGCTGCCTCTTCTTCGAGTGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTTAAGTCCCCTGGAGGACCATCAGTGAAATTTCTAGTTAATGCTGTTCACACCATGGAGGAGTTGAAGCTTACAGGGAACCATCTGAAAGGGTCACGGCCTCTTATAACATTTTCTACAAATTTTGATGAACAACCTCACTGGCAGCTTGTGAAAGAAATGCTAACCCAGATATTTGCTACTCCAAAAGATCATCGAAAGGCAAAGCCTTTTCATGACCATGTGTTTGTCTTCTCTATCGTTGATGACCATGTTTGGTTTAGAAATTATCAGATTTCTGTTCCCCACAATGAGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTCAAGGCTAAGGTGAGGAGGAAGATGCACGAGATGGAGAACACTCTGGAGCCTGATGAATTTGCTGAACTTTGGAAAGGGGAGGACTAGTTCAGCTATAGTGATTGAACCATCAACCCCCGTT AACTAGTTGCTCTCGCTGTCACCCGACACGAGTTTTGTTTACTATAT ] [+] EMBL AU097554 [ TGCTCTCGCTGTCACCCGACACGAGTTTTGTTTACTATATCTCGTGGAATTTCTTGTATGACACCATGAGTCTATTATTTACATGAATAAGATTTTAGTGTCCTAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_9458#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence [CGAGACAAGGGGTGTGAAAGAAATGCTAACCCAGATATTTGCTACTCCAAAAGATCATCGAAAGGCAAAGCCTTTTCATGACCATGTGTTTGTCTTCTCNATCGTTGATGACCATGTTTGGTTTAGGAATTATCAGATTTCTGTTCCCCACAATGAGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTTGGCGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTCAAGGCTAAGGTGAGGAGGAAGATGCCCGAGATGGAGAACACTCTGGAGCCTGATGAATTTGCTGAACTTTGGAAAGGGGAGGACTAGTTCAGCTATAGTGATTGAACCATCAACCCCCGTTAAACTAGTTGCTCTCGCTGTCACCCGACACGAGTTTTGTTTACTATATCTCGTGGAATTTCTTGTATGACCCCATGAGTCTATTATTTACATGAATAAGATTTTAGTGTCCTATCCTAACTCCATCTCGTCTCGTGCTTAAAAGTATAATTCGCATTAGTAGACTTATATGTGCTTAAAAAAAAAAAAAAAA] [-] EMBL CA762541 [CGAGACAAGGGGTGTGAAAGAAATGCTAACCCAGATATTTGCTACTCCAAAAGATCATCGAAAGGCAAAGCCTTTTCATGACCATGTGTTTGTCTTCTCNATCGTTGATGACCATGTTTGGTTTAGGAATTATCAGATTTCTGTTCCCCACAATGAGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTTGGCGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTCAAGGCTAAGGTGAGGAGGAAGATGCCCGAGATGGAGAACACTCTGGAGCCTGATGAATTTGCTGAACTTTGGAAAGGGGAGGACTAGTTCAGCTATAGTGATTGAACCATCAACCCCCGTTAAACTAGTTGCTCTCGCTGTCACCCGACACGAGTTTTGTTTACTATATCTCGTGGAATTTCTTGTATGACCCCATGAGTCTATTATTTACATGAATAAGATTTTAGTGTCCTATCCTAACTCCATCTCGTCTCGTGCTTAAAAGTATAATTCGCATTAGTAGACTTATATGTGCTTAAAAAAAAAAAAAAAA] consensusID : consensus_9458#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 238 fasta sequence [ANNCTCTGGANCCTGATGAANTTGCTGNACTTTGGAAANGGGAGGACTAGTTCAGCTATANTGATTGNACCATCAACCCCCGTTNAACTAGTTGCTCTCGCTGTCACCCGACACGNGTTTTGTTTNCTATANCNCGTGGNANTTCTTGTNTNACNCCATGNGTCTNTTNTTTTCATGAATAANATTTTNGTGNCCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU069069 [ANNCTCTGGANCCTGATGAANTTGCTGNACTTTGGAAANGGGAGGACTAGTTCAGCTATANTGATTGNACCATCAACCCCCGTTNAACTAGTTGCTCTCGCTGTCACCCGACACGNGTTTTGTTTNCTATANCNCGTGGNANTTCTTGTNTNACNCCATGNGTCTNTTNTTTTCATGAATAANATTTTNGTGNCCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9458#0 GAGGATGCCGCCGCCGCCGCCGCCGCGGCGCCGTTCCGCAACAAGGAGAAGGTGCTCGTG 60 consensus_9458#2 ------------------------------------------------------------ consensus_9458#1 ------------------------------------------------------------ consensus_9458#0 ACCTGCTCCCGCCGAATCAACTACCGGTATCGGCATCTGATGCAGAACGTGGTGTCGCTG 120 consensus_9458#2 ------------------------------------------------------------ consensus_9458#1 ------------------------------------------------------------ consensus_9458#0 CTGCCGCACGCCAAGAAGGACAGCAAGGTCGAGTCGAAGCAGAGCAAGGGCAATGCGCTC 180 consensus_9458#2 ------------------------------------------------------------ consensus_9458#1 ------------------------------------------------------------ consensus_9458#0 AACGAGCTGCTCGAGCTCAGGAACTGCTCCAGCTGCCTCTTCTTCGAGTGCAGAAAACAG 240 consensus_9458#2 ------------------------------------------------------------ consensus_9458#1 ------------------------------------------------------------ consensus_9458#0 AAGGATCTTTACCTTTGGATGGTTAAGTCCCCTGGAGGACCATCAGTGAAATTTCTAGTT 300 consensus_9458#2 ------------------------------------------------------------ consensus_9458#1 ------------------------------------------------------------ consensus_9458#0 AATGCTGTTCACACCATGGAGGAGTTGAAGCTTACAGGGAACCATCTGAAAGGGTCACGG 360 consensus_9458#2 ------------------------------------------------------------ consensus_9458#1 ------------------------------------------------------------ consensus_9458#0 CCTCTTATAACATTTTCTACAAATTTTGATGAACAACCTCACTGGCAGCTTGTGAAAGAA 420 consensus_9458#2 ------------------------------------------------------------ consensus_9458#1 --------------------------------------CGAGACAAGGGGTGTGAAAGAA 22 consensus_9458#0 ATGCTAACCCAGATATTTGCTACTCCAAAAGATCATCGAAAGGCAAAGCCTTTTCATGAC 480 consensus_9458#2 ------------------------------------------------------------ consensus_9458#1 ATGCTAACCCAGATATTTGCTACTCCAAAAGATCATCGAAAGGCAAAGCCTTTTCATGAC 82 consensus_9458#0 CATGTGTTTGTCTTCTCTATCGTTGATGACCATGTTTGGTTTAGAAATTATCAGATTTCT 540 consensus_9458#2 ------------------------------------------------------------ consensus_9458#1 CATGTGTTTGTCTTCTCNATCGTTGATGACCATGTTTGGTTTAGGAATTATCAGATTTCT 142 consensus_9458#0 GTTCCCCACAATGAGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTT 600 consensus_9458#2 ------------------------------------------------------------ consensus_9458#1 GTTCCCCACAATGAGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTT 202 consensus_9458#0 GAGGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCGGTGGC 660 consensus_9458#2 ------------------------------------------------------------ consensus_9458#1 GAGGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTTGGCGGC 262 consensus_9458#0 CCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGATCCGTGCACTAGAGAAG 720 consensus_9458#2 ------------------------------------------------------------ consensus_9458#1 CCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGATCCGTGCACTAGAGAAG 322 consensus_9458#0 CGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTCAAGGCTAAGGTGAGGAGGAAGATGCAC 780 consensus_9458#2 ------------------------------------------------------------ consensus_9458#1 CGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTCAAGGCTAAGGTGAGGAGGAAGATGCCC 382 consensus_9458#0 GAGATGGAGAACACTCTGGAGCCTGATGAATTTGCTGAACTTTGGAAAGGGGAGGACTAG 840 consensus_9458#2 ----------ANNCTCTGGANCCTGATGAANTTGCTGNACTTTGGAAANGGGAGGACTAG 50 consensus_9458#1 GAGATGGAGAACACTCTGGAGCCTGATGAATTTGCTGAACTTTGGAAAGGGGAGGACTAG 442 * ******* ********* ****** ********** *********** consensus_9458#0 TTCAGCTATAGTGATTGAACCATCAACCCCCGTTAAACTAGTTGCTCTCGCTGTCACCCG 900 consensus_9458#2 TTCAGCTATANTGATTGNACCATCAACCCCCGTTNAACTAGTTGCTCTCGCTGTCACCCG 110 consensus_9458#1 TTCAGCTATAGTGATTGAACCATCAACCCCCGTTAAACTAGTTGCTCTCGCTGTCACCCG 502 ********** ****** **************** ************************* consensus_9458#0 ACACGAGTTTTGTTTACTATATCTCGTGGAATTTCTTGTATGACACCATGAGTCTATTAT 960 consensus_9458#2 ACACGNGTTTTGTTTNCTATANCNCGTGGNANTTCTTGTNTNACNCCATGNGTCTNTTNT 170 consensus_9458#1 ACACGAGTTTTGTTTACTATATCTCGTGGAATTTCTTGTATGACCCCATGAGTCTATTAT 562 ***** ********* ***** * ***** * ******* * ** ***** **** ** * consensus_9458#0 TTACATGAATAAGATTTTAGTGTCCTAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAA 1020 consensus_9458#2 TTTCATGAATAANATTTTNGTGNCCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 230 consensus_9458#1 TTACATGAATAAGATTTTAGTGTCCTATCCTAACTCCATCTCGTCTCGTGCTTAAAAGTA 622 ** ********* ***** *** ** * ** * **** * consensus_9458#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1067 consensus_9458#2 AAAAAAAA--------------------------------------- 238 consensus_9458#1 TAATTCGCATTAGTAGACTTATATGTGCTTAAAAAAAAAAAAAAAA- 668 ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||