|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9458#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1067 fasta sequence
[GAGGATGCCGCCGCCGCCGCCGCCGCGGCGCCGTTCCGCAACAAGGAGAAGGTGCTCGTGACCTGCTCCCGCCGAATCAACTACCGGTATCGGCATCTGATGCAGAACGTGGTGTCGCTGCTGCCGCACGCCAAGAAGGACAGCAAGGTCGAGTCGAAGCAGAGCAAGGGCAATGCGCTCAACGAGCTGCTCGAGCTCAGGAACTGCTCCAGCTGCCTCTTCTTCGAGTGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTTAAGTCCCCTGGAGGACCATCAGTGAAATTTCTAGTTAATGCTGTTCACACCATGGAGGAGTTGAAGCTTACAGGGAACCATCTGAAAGGGTCACGGCCTCTTATAACATTTTCTACAAATTTTGATGAACAACCTCACTGGCAGCTTGTGAAAGAAATGCTAACCCAGATATTTGCTACTCCAAAAGATCATCGAAAGGCAAAGCCTTTTCATGACCATGTGTTTGTCTTCTCTATCGTTGATGACCATGTTTGGTTTAGAAATTATCAGATTTCTGTTCCCCACAATGAGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTCAAGGCTAAGGTGAGGAGGAAGATGCACGAGATGGAGAACACTCTGGAGCCTGATGAATTTGCTGAACTTTGGAAAGGGGAGGACTAGTTCAGCTATAGTGATTGAACCATCAACCCCCGTTAAACTAGTTGCTCTCGCTGTCACCCGACACGAGTTTTGTTTACTATATCTCGTGGAATTTCTTGTATGACACCATGAGTCTATTATTTACATGAATAAGATTTTAGTGTCCTAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK102534 [GAGGATGCCGCCGCCGCCGCCGCCGCGGCGCCGTTCCGCAACAAGGAGAAGGTGCTCGTGACCTGCTCCCGCCGAATCAACTACCGGTATCGGCATCTGATGCAGAACGTGGTGTCGCTGCTGCCGCACGCCAAGAAGGACAGCAAGGTCGAGTCGAAGCAGAGCAAGGGCAATGCGCTCAACGAGCTGCTCGAGCTCAGGAACTGCTCCAGCTGCCTCTTCTTCGAGTGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTTAAGTCCCCTGGAGGACCATCAGTGAAATTTCTAGTTAATGCTGTTCACACCATGGAGGAGTTGAAGCTTACAGGGAACCATCTGAAAGGGTCACGGCCTCTTATAACATTTTCTACAAATTTTGATGAACAACCTCACTGGCAGCTTGTGAAAGAAATGCTAACCCAGATATTTGCTACTCCAAAAGATCATCGAAAGGCAAAGCCTTTTCATGACCATGTGTTTGTCTTCTCTATCGTTGATGACCATGTTTGGTTTAGAAATTATCAGATTTCTGTTCCCCACAATGAGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTCAAGGCTAAGGTGAGGAGGAAGATGCACGAGATGGAGAACACTCTGGAGCCTGATGAATTTGCTGAACTTTGGAAAGGGGAGGACTAGTTCAGCTATAGTGATTGAACCATCAACCCCCGTTAAACTAGTTGCTCTCGCTGTCACCCGACACGAGTTTTGTTTACTATATCTCGTGGAATTTCTTGTATGACACCATGAGTCTATTATTTACATGAATAAGATTTTAGT ]
[+] EMBL AK060611 [GAGGATGCCGCCGCCGCCGCCGCCGCGGCGCCGTTCCGCAACAAGGAGAAGGTGCTCGTGACCTGCTCCCGCCGAATCAACTACCGGTATCGGCATCTGATGCAGAACGTGGTGTCGCTGCTGCCGCACGCCAAGAAGGACAGCAAGGTCGAGTCGAAGCAGAGCAAGGGCAATGCGCTCAACGAGCTGCTCGAGCTCAGGAACTGCTCCAGCTGCCTCTTCTTCGAGTGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTTAAGTCCCCTGGAGGACCATCAGTGAAATTTCTAGTTAATGCTGTTCACACCATGGAGGAGTTGAAGCTTACAGGGAACCATCTGAAAGGGTCACGGCCTCTTATAACATTTTCTACAAATTTTGATGAACAACCTCACTGGCAGCTTGTGAAAGAAATGCTAACCCAGATATTTGCTACTCCAAAAGATCATCGAAAGGCAAAGCCTTTTCATGACCATGTGTTTGTCTTCTCTATCGTTGATGACCATGTTTGGTTTAGAAATTATCAGATTTCTGTTCCCCACAATGAGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGGTTGGCCCAAGGTCCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTCAAGGCTAAGGTGAGGAGGAAGATGCACGAGATGGAGAACACTCTGGAGCCTGATGAATTTGCTGAACTTTGGAAAGGGGAGGACTAGTTCAGCTATAGTGATTGAACCATCAACCCCCGTTAAACTAGTTGCTCTCGCTGTCACCCGACACGAGTTTTGTTTACTATATCTCGTGGAATTTCTTGTATGACACCATGAGTCTATTATTTACATGAATAAGAT ]
[+] EMBL CB000264 [ CTCCCGCCGAATCAACTACCGGTATCGGCATCCTATGCAGAACGTGGTGTCGCTGCTGCCGCACGCCAAGAAGGACAGCAAGGTCGAGTCGAAGCAGAGCAAGGGCAATGCGCTCAACGAGCTGCTCGAGCTCAGGAACTGCTCCAGCTGCCTCTTCTTCGAGTGCAGAAAACAGAAGGATCTTTACCTTTGGATGGTTAAGTCCCCTGGAGGACCATCAGTGAAATTTCTAGTTAATGCTGTTCACACCATGGAGGAGTTGAAGCTTACAGGGAACCATCTGAAAGGGTCACGGCCTCTTATAACATTTTCTACAAATTTTGATGAACAACCTCACTGGCAGCTTGTGAAAGAAATGCTAACCCAGATATTTGCTACTCCAAAAGATCATCGAAAGGCAAAGCCTTTTCATGACCATGTGTTTGTCTTCTCTATCGTTGATGACCATGTTTGGTTTAGAAATTATCAGATTTCTGTTCCCCACAATGAGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTCAAGGCTAAGGTGAGGAGGAAGATGCACGAGATGGAGAACACTCTGGAGCCTGATGAATTTGCTGAACTTTGGAAAGGGGAGGACTAGTTCAGCTATAGTGATTGAACCATCAACCCCCGTT AACTAGTTGCTCTCGCTGTCACCCGACACGAGTTTTGTTTACTATAT ]
[+] EMBL AU097554 [ TGCTCTCGCTGTCACCCGACACGAGTTTTGTTTACTATATCTCGTGGAATTTCTTGTATGACACCATGAGTCTATTATTTACATGAATAAGATTTTAGTGTCCTAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_9458#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence
[CGAGACAAGGGGTGTGAAAGAAATGCTAACCCAGATATTTGCTACTCCAAAAGATCATCGAAAGGCAAAGCCTTTTCATGACCATGTGTTTGTCTTCTCNATCGTTGATGACCATGTTTGGTTTAGGAATTATCAGATTTCTGTTCCCCACAATGAGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTTGGCGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTCAAGGCTAAGGTGAGGAGGAAGATGCCCGAGATGGAGAACACTCTGGAGCCTGATGAATTTGCTGAACTTTGGAAAGGGGAGGACTAGTTCAGCTATAGTGATTGAACCATCAACCCCCGTTAAACTAGTTGCTCTCGCTGTCACCCGACACGAGTTTTGTTTACTATATCTCGTGGAATTTCTTGTATGACCCCATGAGTCTATTATTTACATGAATAAGATTTTAGTGTCCTATCCTAACTCCATCTCGTCTCGTGCTTAAAAGTATAATTCGCATTAGTAGACTTATATGTGCTTAAAAAAAAAAAAAAAA]
[-] EMBL CA762541 [CGAGACAAGGGGTGTGAAAGAAATGCTAACCCAGATATTTGCTACTCCAAAAGATCATCGAAAGGCAAAGCCTTTTCATGACCATGTGTTTGTCTTCTCNATCGTTGATGACCATGTTTGGTTTAGGAATTATCAGATTTCTGTTCCCCACAATGAGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTTGGCGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTCAAGGCTAAGGTGAGGAGGAAGATGCCCGAGATGGAGAACACTCTGGAGCCTGATGAATTTGCTGAACTTTGGAAAGGGGAGGACTAGTTCAGCTATAGTGATTGAACCATCAACCCCCGTTAAACTAGTTGCTCTCGCTGTCACCCGACACGAGTTTTGTTTACTATATCTCGTGGAATTTCTTGTATGACCCCATGAGTCTATTATTTACATGAATAAGATTTTAGTGTCCTATCCTAACTCCATCTCGTCTCGTGCTTAAAAGTATAATTCGCATTAGTAGACTTATATGTGCTTAAAAAAAAAAAAAAAA]
consensusID : consensus_9458#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 238 fasta sequence
[ANNCTCTGGANCCTGATGAANTTGCTGNACTTTGGAAANGGGAGGACTAGTTCAGCTATANTGATTGNACCATCAACCCCCGTTNAACTAGTTGCTCTCGCTGTCACCCGACACGNGTTTTGTTTNCTATANCNCGTGGNANTTCTTGTNTNACNCCATGNGTCTNTTNTTTTCATGAATAANATTTTNGTGNCCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU069069 [ANNCTCTGGANCCTGATGAANTTGCTGNACTTTGGAAANGGGAGGACTAGTTCAGCTATANTGATTGNACCATCAACCCCCGTTNAACTAGTTGCTCTCGCTGTCACCCGACACGNGTTTTGTTTNCTATANCNCGTGGNANTTCTTGTNTNACNCCATGNGTCTNTTNTTTTCATGAATAANATTTTNGTGNCCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9458#0 GAGGATGCCGCCGCCGCCGCCGCCGCGGCGCCGTTCCGCAACAAGGAGAAGGTGCTCGTG 60
consensus_9458#2 ------------------------------------------------------------
consensus_9458#1 ------------------------------------------------------------
consensus_9458#0 ACCTGCTCCCGCCGAATCAACTACCGGTATCGGCATCTGATGCAGAACGTGGTGTCGCTG 120
consensus_9458#2 ------------------------------------------------------------
consensus_9458#1 ------------------------------------------------------------
consensus_9458#0 CTGCCGCACGCCAAGAAGGACAGCAAGGTCGAGTCGAAGCAGAGCAAGGGCAATGCGCTC 180
consensus_9458#2 ------------------------------------------------------------
consensus_9458#1 ------------------------------------------------------------
consensus_9458#0 AACGAGCTGCTCGAGCTCAGGAACTGCTCCAGCTGCCTCTTCTTCGAGTGCAGAAAACAG 240
consensus_9458#2 ------------------------------------------------------------
consensus_9458#1 ------------------------------------------------------------
consensus_9458#0 AAGGATCTTTACCTTTGGATGGTTAAGTCCCCTGGAGGACCATCAGTGAAATTTCTAGTT 300
consensus_9458#2 ------------------------------------------------------------
consensus_9458#1 ------------------------------------------------------------
consensus_9458#0 AATGCTGTTCACACCATGGAGGAGTTGAAGCTTACAGGGAACCATCTGAAAGGGTCACGG 360
consensus_9458#2 ------------------------------------------------------------
consensus_9458#1 ------------------------------------------------------------
consensus_9458#0 CCTCTTATAACATTTTCTACAAATTTTGATGAACAACCTCACTGGCAGCTTGTGAAAGAA 420
consensus_9458#2 ------------------------------------------------------------
consensus_9458#1 --------------------------------------CGAGACAAGGGGTGTGAAAGAA 22
consensus_9458#0 ATGCTAACCCAGATATTTGCTACTCCAAAAGATCATCGAAAGGCAAAGCCTTTTCATGAC 480
consensus_9458#2 ------------------------------------------------------------
consensus_9458#1 ATGCTAACCCAGATATTTGCTACTCCAAAAGATCATCGAAAGGCAAAGCCTTTTCATGAC 82
consensus_9458#0 CATGTGTTTGTCTTCTCTATCGTTGATGACCATGTTTGGTTTAGAAATTATCAGATTTCT 540
consensus_9458#2 ------------------------------------------------------------
consensus_9458#1 CATGTGTTTGTCTTCTCNATCGTTGATGACCATGTTTGGTTTAGGAATTATCAGATTTCT 142
consensus_9458#0 GTTCCCCACAATGAGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTT 600
consensus_9458#2 ------------------------------------------------------------
consensus_9458#1 GTTCCCCACAATGAGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTT 202
consensus_9458#0 GAGGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCGGTGGC 660
consensus_9458#2 ------------------------------------------------------------
consensus_9458#1 GAGGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTTGGCGGC 262
consensus_9458#0 CCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGATCCGTGCACTAGAGAAG 720
consensus_9458#2 ------------------------------------------------------------
consensus_9458#1 CCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGATCCGTGCACTAGAGAAG 322
consensus_9458#0 CGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTCAAGGCTAAGGTGAGGAGGAAGATGCAC 780
consensus_9458#2 ------------------------------------------------------------
consensus_9458#1 CGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTCAAGGCTAAGGTGAGGAGGAAGATGCCC 382
consensus_9458#0 GAGATGGAGAACACTCTGGAGCCTGATGAATTTGCTGAACTTTGGAAAGGGGAGGACTAG 840
consensus_9458#2 ----------ANNCTCTGGANCCTGATGAANTTGCTGNACTTTGGAAANGGGAGGACTAG 50
consensus_9458#1 GAGATGGAGAACACTCTGGAGCCTGATGAATTTGCTGAACTTTGGAAAGGGGAGGACTAG 442
* ******* ********* ****** ********** ***********
consensus_9458#0 TTCAGCTATAGTGATTGAACCATCAACCCCCGTTAAACTAGTTGCTCTCGCTGTCACCCG 900
consensus_9458#2 TTCAGCTATANTGATTGNACCATCAACCCCCGTTNAACTAGTTGCTCTCGCTGTCACCCG 110
consensus_9458#1 TTCAGCTATAGTGATTGAACCATCAACCCCCGTTAAACTAGTTGCTCTCGCTGTCACCCG 502
********** ****** **************** *************************
consensus_9458#0 ACACGAGTTTTGTTTACTATATCTCGTGGAATTTCTTGTATGACACCATGAGTCTATTAT 960
consensus_9458#2 ACACGNGTTTTGTTTNCTATANCNCGTGGNANTTCTTGTNTNACNCCATGNGTCTNTTNT 170
consensus_9458#1 ACACGAGTTTTGTTTACTATATCTCGTGGAATTTCTTGTATGACCCCATGAGTCTATTAT 562
***** ********* ***** * ***** * ******* * ** ***** **** ** *
consensus_9458#0 TTACATGAATAAGATTTTAGTGTCCTAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAA 1020
consensus_9458#2 TTTCATGAATAANATTTTNGTGNCCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 230
consensus_9458#1 TTACATGAATAAGATTTTAGTGTCCTATCCTAACTCCATCTCGTCTCGTGCTTAAAAGTA 622
** ********* ***** *** ** * ** * **** *
consensus_9458#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1067
consensus_9458#2 AAAAAAAA--------------------------------------- 238
consensus_9458#1 TAATTCGCATTAGTAGACTTATATGTGCTTAAAAAAAAAAAAAAAA- 668
**
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||