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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9468#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1776 fasta sequence
[CTAGCCCCCCTCGATCCCACCGGCGACCTCCCGCCGCCTCCGCCGGGGACAAGCCCCCCTGCGCGCCGCGCTGCAATGGCGTTCTCCTTCGCCTCACCGGCGCCGCAGAATCCGTTCCAGACGCCGGCGCAGGCCCCGTCCCTGTCTCCTTCGCCGTTTCAGTTCAACCTGCAGCAGCCGCAGCAGCAGCAGCAGCAGCCGCCGCCACAGCAACAGGCGGCGCC-GGCCGCGCAACCGCAGCAGCAGCAGCTGATGCTATATACGACGGACGGGAAGCCCGCGGGGTACAACACGAAGTGGGAGGAGCTTCAC-GCCGAGTCGCAGAAGGCGCTGCTCCAGATCGAGGATAAAATAAGGGAGTACAGGGACGAGAGCGAGAGGTTGGATCAGTGTTCTCGCCTTCATGACTCTTCAATCTCAACTGTCAATTTTGAGAATGATGCAAGTGAAATTGCTCAGGAACTTGGAGGGACAACCACCATGATGGAAAGAGAGAAGGCTTCCGTTCAAGAGTTAATGACTGTTGTGAATGAAATGATGCGAAACACAGAATTTGCTATTAGGTCATATATGATGCTGAGACCAAGATTTATCCGTCCAGGTGCTGGAGCAAATGGTGGTGGCTCAAATCCTTCTGGTCCTGCTGGAGCTCAGTCCAATCAGCCAGTAGCATTGGCTCCAACCATTGATTTCTATAGTGGTATCCCAAAGCGGCCTTCCCATTTTATGCAACAGACTATCAACAGGTTTGAGAAATATCTTGGAGAATGCTGCAAGTGGATCGCGGAGCTAGAGCAGCTTGTTCAAATGGAGAACAATAAAAGGCAATCAGCCTCATTAGAATCTCTACCGAAGGTTATGTCGAATGTGCATGATTATTTCATCTATGTTGCTTCTAAGGTGGAAAATCTTCATCAATATGTTGAGTCATTGAAAACTGAATATCTACATGAGCAGCGGCGATTGGGTAATGCCAATGATCCATTTTTAGAGGCAAATAGACGAGAAGCGGCTAAACAAGAAGCAGCTGCCAGAAGGGTACATCCAACATTGCATTTGCCTGCTCCTGTACAGCCCACAACTCAAATTGCTGGAACAGTGACGAGTCAACCACAGCAATCATTGATTCCTTCTGGAGCGACTTCTTCAAGTGCTTTTCCATCATTCAGCACTCCAGCTTCCGCTCCATCTTCTTCAAGTCTCTTTTCAACTCCAACAACTCCAACTCTATCCAGCAACCTTTTTGGTACATCTGGATCAGCCCAGCTGTCCACACCATTTGGGACAGTCTCTACTCCAACGCTTGGATCAACGCCGGCTCCATCTGGATTTGGGAATACAACTCCATCTTTTGCTTCAACGCCCGCTTTAGG-TGGAACCTCACTGTTTTCTACGCCGTTCGGAGGTGGAGCTACAGCTTCAGGATCCAGCTTTGGTGGTACATCTAAAGTGCGGTCAAAACCTCGGGGCCGACGCTAGGTGTAGCTGATGAGCGTGAAATGTGGGTGCCTCTTGTATCTCTTTTTCCTCGTCTTTCATTTTTCCAAGAATGCGCAAAATATTTGCGTCTTTTCATTAAGACA-GAGGGAAAGGTTCTCACCAGTGGTTACAAATTGGTCTGAACTATGGAAACATATTTCAGACTCATATTCCTCCTGTCTTATGGAAAGAACTTGTAATTAATTTATCGGTGATTGTAGTGGAGCATGATTGGTTTTGTGACACTTAATAGATTCTAATGTATGTGCCCCATTTCAGTACTATCAGAATGTGCAC]
[+] EMBL AK103120 [CTAGCCCCCCTCGATCCCACCGGCGACCTCCCGCCGCCTCCGCCGGGGACAAGCCCCCCTGCGCGCCGCGCTGCAATGGCGTTCTCCTTCGCCTCACCGGCGCCGCAGAATCCGTTCCAGACGCCGGCGCAGGCCCCGTCCCTGTCTCCTTCGCCGTTTCAGTTCAACCTGCAGCAGCCGCAGCAGCAGCAGCAGCAGCCGCCGCCACAGCAACAGGCGGCGCC GGCCGCGCAACCGCAGCAGCAGCAGCTGATGCTATATACGACGGACGGGAAGCCCGCGGGGTACAACACGAAGTGGGAGGAGCTTCAC GCCGAGTCGCAGAAGGCGCTGCTCCAGATCGAGGATAAAATAAGGGAGTACAGGGACGAGAGCGAGAGGTTGGATCAGTGTTCTCGCCTTCATGACTCTTCAATCTCAACTGTCAATTTTGAGAATGATGCAAGTGAAATTGCTCAGGAACTTGGAGGGACAACCACCATGATGGAAAGAGAGAAGGCTTCCGTTCAAGAGTTAATGACTGTTGTGAATGAAATGATGCGAAACACAGAATTTGCTATTAGGTCATATATGATGCTGAGACCAAGATTTATCCGTCCAGGTGCTGGAGCAAATGGTGGTGGCTCAAATCCTTCTGGTCCTGCTGGAGCTCAGTCCAATCAGCCAGTAGCATTGGCTCCAACCATTGATTTCTATAGTGGTATCCCAAAGCGGCCTTCCCATTTTATGCAACAGACTATCAACAGGTTTGAGAAATATCTTGGAGAATGCTGCAAGTGGATCGCGGAGCTAGAGCAGCTTGTTCAAATGGAGAACAATAAAAGGCAATCAGCCTCATTAGAATCTCTACCGAAGGTTATGTCGAATGTGCATGATTATTTCATCTATGTTGCTTCTAAGGTGGAAAATCTTCATCAATATGTTGAGTCATTGAAAACTGAATATCTACATGAGCAGCGGCGATTGGGTAATGCCAATGATCCATTTTTAGAGGCAAATAGACGAGAAGCGGCTAAACAAGAAGCAGCTGCCAGAAGGGTACATCCAACATTGCATTTGCCTGCTCCTGTACAGCCCACAACTCAAATTGCTGGAACAGTGACGAGTCAACCACAGCAATCATTGATTCCTTCTGGAGCGACTTCTTCAAGTGCTTTTCCATCATTCAGCACTCCAGCTTCCGCTCCATCTTCTTCAAGTCTCTTTTCAACTCCAACAACTCCAACTCTATCCAGCAACCTTTTTGGTACATCTGGATCAGCCCAGCTGTCCACACCATTTGGGACAGTCTCTACTCCAACGCTTGGATCAACGCCGGCTCCATCTGGATTTGGGAATACAACTCCATCTTTTGCTTCAACGCCCGCTTTAGG TGGAACCTCACTGTTTTCTACGCCGTTCGGAGGTGGAGCTACAGCTTCAGGATCCAGCTTTGGTGGTACATCTAAAGTGCGGTCAAAACCTCGGGGCCGACGCTAGGTGTAGCTGATGAGCGTGAAATGTGGGTGCCTCTTGTATCTCTTTTTCCTCGTCTTTCATTTTTCCAAGAATGCGCAAAATATTTGCGTCTTTTCATTAAGACA GAGGGAAAGGTTCTCACCAGTGGTTACAAATTGGTCTGAACTATGGAAACATATTTCAGACTCATATTCCTCCTGTCTTATGGAAAGAACTTGTAATTAATTTATCGGTGATTGTAGTGGAGCATGATTGGTTTTGTGACACTTAATAGATTCTAATGTATGTGCCCCA ]
[+] EMBL AU070032 [ GATCCCACCGGCGACCTCCCGCCGCCTCCGCCGGGGACAAGCCCCCCTGCGCGCCGCGCTGCAATGGCGTTCTCCTTCGCCTCACCGGCGCCGCAGAATCCGTTCCAGACGCCGGCGCAGGCCCCGTCCCTGTCTCCTTCGCCGTTTCAGTTCAACCTGCAGCAGCCGCAGCAGCAGCAGCAGCAGCCGCCGCCACAGNAACAGGCGGCGCCGGGCCGCGCAACCGCAGNAGCAGCAGCTGATGCTATATACGACGGACGGGAAGCCCGCGGGGTACAACACGAA TGGTAGGAG TTCACGGCCGAGTCGCAGAAGGCGCTGCTCCAGATCGAGGNTAAAATAAGGGAGTACAGGGACGAGAGCGANAGGTTGGATCAGTGTTCTCG CTTCATGANTCT ]
[+] EMBL CB676011 [ ACCGGCCTCCTCCCGCCGCCTCCGCCGGGGACAAGCCCCCCTGCGCGCCGCGCTGCAATGGCGTTCTCCTTCGCCTCACCGGCGCCGCAGAATCCGTTCCAGACGCCGGCGCAGGCCCCGTCCCTGTCTCCTTCGCCGTTTCAGTTCAACCTGCAGCAGCCGCAGCAGCAGCAGCAGCAGCCGCCGCCACAGCAACAGGCGGCGCC GGCCGCGCAACCGCAGCAGCAGCAGCTGATGCTATATACGACGGACGGGAAGCCCGCGGGGTACAACACGAAGTGGGAGGAGCTTCAC GCCGAGTCGCAGAAGGCGCTGCTCCAGATCGAGGATAAAATAAGGGAGTACAGGGACGAGAGCGAGAGGTTGGATCAGTGTTCTCGCCTTCATGACTCTTCAATCTCAACTGTCAATTTTGAGAATGATGCAAGTGAAATTGCTCAGGAACTTGGAGGGACAACCACCATGATGGAAAGAGAGAAGGCTTCCGTTCAAGAGTTAATGACTGTTGTGAATGAAATGATGCGAAACACAGAATTTGCTATTAGGTCATATATGATGCTGAGACCAAGATTTATCCGTCCAGGTGCTGGAGCAAATGGTGGTGGCTCAAATCCTTCTGGTCCTGCTGGAGCTCAGTCCAATCAGCCAGTAGCATTGGCTCCAACCATTGATTTCTATAGTGGTATCCCAAAGCGGCCTTCCCATTTTATGCAACAGACTATCAACAGGTTTGAGAAATATCTTGGAGAATGCTGCAAGTGGATCGCGGAGCTAGAGCAGCTTGTTCAAATGGAGAACAATAAAAGGCAATCAGCCTCATTA ]
[-] EMBL CB676012 [ TTAGAGGCAAATAGACGAGAAGCGGCTAAACAAGAAGCAGCTGCCAGAAGGGTACATCCAACATTGCATTTGCCTGCTCCTGTACAGCCCACAACTCAAATTGCTGGAACAGTGACGAGTCAACCACAGCAATCATTGATTCCTTCTGGAGCGACTTCTTCAAGTGCTTTTCCATCATTCAGCACTCCAGCTTCCGCTCCATCTTCTTCAAGTCTCTTTTCAACTCCAACAACTCCAACTCTATCCAGCAACCTTTTTGGTACATCTGGATCAGCCCAGCTGTCCACACCATTTGGGACAGTCTCTACTCCAACGCTTGGATCAACGCCGGCTCCATCTGGATTTGGGAATACAACTCCATCTTTTGCTTCAACGCCCGCTTTAGG TGGAACCTCACTGTTTTTTACGCCGTTCGGAGGTGGAGCTACAGCTTCAGGATCCAGCTTTGGTGGTACATCTAAAGTGCGGTCAAAACCTCGGGGCCGACGCTAGGTGTAGCTGATGAGCGTGAAATGTGGGTGCCTCTTGTATCTCTTTTTCCTCGTCTTTCATTTTTCCAAGAATGCGCAAAATATTTGCGTCTTTTCATTAAGACA GAGGGAAAGGTTCTCACCAGTGGTTACAAATTGGTCTGAACTATGGAAACATATTTCAGACTCATATTCCTCCTGTCTTATGGAAAGAACTTGTAATTAATTTATCGGTGATTGTAGTGGAGCATGATTGGTTTTGTGACACTTAATAGATTCTAATGTATGTGCCCCATTTCAGTACTATCAGAATGTGCAC]
[+] EMBL BI801776 [ TCAACTCC ACAACTCCAACTCTATCCAGCAACCTTTTT GTACATCTGGATCAGCCCA CTGTCCACACCATTTGGGACAGTCTCTACTCCAACGCTTGGATCAACGCCGGCTCCATCTGGATTTGGGAATACAACTCCATCTTTTGCTTCAACGCCCGCTTTAGGCTGGAACCTCACTGTTTTCTACGCCGTTCGGAGGTGGAGCTACAGCTTCAGGATCCAGCTTTGGTGGTACATCTAAAGTGCGGTCAAAACCTCGGGGCCGACGCTAGGTGTAGCTGATGAGCGTGAAATGTGGGTGCCTCTTGTATCTCTTTTTCCTCGTCTTTCATTTTTCCAAGAATGCGCAAAATATTTGCGTCTTTTCATTAAGACACGAGGGAAAGGTTCTCACCAGTGGTTACAAATTGGTCTGAACTATGGAAACATATTTCAGACTCATATTCCTCTTGTCTTATGGAAAGAACTTGTAATTAATTTATCGGTGATTGTAGTGGAGCATGATTGGTTTTGTGACACTTAATAGATTCTAATGTATGTGCCCCATTTCAGTACTAaaaaa ]
consensusID : consensus_9468#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 150 fasta sequence
[CCGCCCACGCGTCCGATTTCAGACTCATATTCCTCCTGTCTTATGGAAAGAACTTGTAATTAATTTATCGGTGATTGTAGTGGAGCATGATTGGTTTTGTGACACTTAATAGATTCTAATGTATGTGCCCCCTTTCAGTACTAAAAAAAA]
[+] EMBL BQ908264 [CCGCCCACGCGTCCGATTTCAGACTCATATTCCTCCTGTCTTATGGAAAGAACTTGTAATTAATTTATCGGTGATTGTAGTGGAGCATGATTGGTTTTGTGACACTTAATAGATTCTAATGTATGTGCCCCCTTTCAGTACTAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9468#0 CTAGCCCCCCTCGATCCCACCGGCGACCTCCCGCCGCCTCCGCCGGGGACAAGCCCCCCT 60
consensus_9468#1 ------------------------------------------------------------
consensus_9468#0 GCGCGCCGCGCTGCAATGGCGTTCTCCTTCGCCTCACCGGCGCCGCAGAATCCGTTCCAG 120
consensus_9468#1 ------------------------------------------------------------
consensus_9468#0 ACGCCGGCGCAGGCCCCGTCCCTGTCTCCTTCGCCGTTTCAGTTCAACCTGCAGCAGCCG 180
consensus_9468#1 ------------------------------------------------------------
consensus_9468#0 CAGCAGCAGCAGCAGCAGCCGCCGCCACAGCAACAGGCGGCGCCGGCCGCGCAACCGCAG 240
consensus_9468#1 ------------------------------------------------------------
consensus_9468#0 CAGCAGCAGCTGATGCTATATACGACGGACGGGAAGCCCGCGGGGTACAACACGAAGTGG 300
consensus_9468#1 ------------------------------------------------------------
consensus_9468#0 GAGGAGCTTCACGCCGAGTCGCAGAAGGCGCTGCTCCAGATCGAGGATAAAATAAGGGAG 360
consensus_9468#1 ------------------------------------------------------------
consensus_9468#0 TACAGGGACGAGAGCGAGAGGTTGGATCAGTGTTCTCGCCTTCATGACTCTTCAATCTCA 420
consensus_9468#1 ------------------------------------------------------------
consensus_9468#0 ACTGTCAATTTTGAGAATGATGCAAGTGAAATTGCTCAGGAACTTGGAGGGACAACCACC 480
consensus_9468#1 ------------------------------------------------------------
consensus_9468#0 ATGATGGAAAGAGAGAAGGCTTCCGTTCAAGAGTTAATGACTGTTGTGAATGAAATGATG 540
consensus_9468#1 ------------------------------------------------------------
consensus_9468#0 CGAAACACAGAATTTGCTATTAGGTCATATATGATGCTGAGACCAAGATTTATCCGTCCA 600
consensus_9468#1 ------------------------------------------------------------
consensus_9468#0 GGTGCTGGAGCAAATGGTGGTGGCTCAAATCCTTCTGGTCCTGCTGGAGCTCAGTCCAAT 660
consensus_9468#1 ------------------------------------------------------------
consensus_9468#0 CAGCCAGTAGCATTGGCTCCAACCATTGATTTCTATAGTGGTATCCCAAAGCGGCCTTCC 720
consensus_9468#1 ------------------------------------------------------------
consensus_9468#0 CATTTTATGCAACAGACTATCAACAGGTTTGAGAAATATCTTGGAGAATGCTGCAAGTGG 780
consensus_9468#1 ------------------------------------------------------------
consensus_9468#0 ATCGCGGAGCTAGAGCAGCTTGTTCAAATGGAGAACAATAAAAGGCAATCAGCCTCATTA 840
consensus_9468#1 ------------------------------------------------------------
consensus_9468#0 GAATCTCTACCGAAGGTTATGTCGAATGTGCATGATTATTTCATCTATGTTGCTTCTAAG 900
consensus_9468#1 ------------------------------------------------------------
consensus_9468#0 GTGGAAAATCTTCATCAATATGTTGAGTCATTGAAAACTGAATATCTACATGAGCAGCGG 960
consensus_9468#1 ------------------------------------------------------------
consensus_9468#0 CGATTGGGTAATGCCAATGATCCATTTTTAGAGGCAAATAGACGAGAAGCGGCTAAACAA 1020
consensus_9468#1 ------------------------------------------------------------
consensus_9468#0 GAAGCAGCTGCCAGAAGGGTACATCCAACATTGCATTTGCCTGCTCCTGTACAGCCCACA 1080
consensus_9468#1 ------------------------------------------------------------
consensus_9468#0 ACTCAAATTGCTGGAACAGTGACGAGTCAACCACAGCAATCATTGATTCCTTCTGGAGCG 1140
consensus_9468#1 ------------------------------------------------------------
consensus_9468#0 ACTTCTTCAAGTGCTTTTCCATCATTCAGCACTCCAGCTTCCGCTCCATCTTCTTCAAGT 1200
consensus_9468#1 ------------------------------------------------------------
consensus_9468#0 CTCTTTTCAACTCCAACAACTCCAACTCTATCCAGCAACCTTTTTGGTACATCTGGATCA 1260
consensus_9468#1 ------------------------------------------------------------
consensus_9468#0 GCCCAGCTGTCCACACCATTTGGGACAGTCTCTACTCCAACGCTTGGATCAACGCCGGCT 1320
consensus_9468#1 ------------------------------------------------------------
consensus_9468#0 CCATCTGGATTTGGGAATACAACTCCATCTTTTGCTTCAACGCCCGCTTTAGGTGGAACC 1380
consensus_9468#1 ------------------------------------------------------------
consensus_9468#0 TCACTGTTTTCTACGCCGTTCGGAGGTGGAGCTACAGCTTCAGGATCCAGCTTTGGTGGT 1440
consensus_9468#1 ------------------------------------------------------------
consensus_9468#0 ACATCTAAAGTGCGGTCAAAACCTCGGGGCCGACGCTAGGTGTAGCTGATGAGCGTGAAA 1500
consensus_9468#1 ------------------------------------------------------------
consensus_9468#0 TGTGGGTGCCTCTTGTATCTCTTTTTCCTCGTCTTTCATTTTTCCAAGAATGCGCAAAAT 1560
consensus_9468#1 ------------------------------------------------------------
consensus_9468#0 ATTTGCGTCTTTTCATTAAGACAGAGGGAAAGGTTCTCACCAGTGGTTACAAATTGGTCT 1620
consensus_9468#1 -----------------------------------------------------------C 1
consensus_9468#0 GAACTATGGAAACATATTTCAGACTCATATTCCTCCTGTCTTATGGAAAGAACTTGTAAT 1680
consensus_9468#1 CGCCCACGCGTCCG-ATTTCAGACTCATATTCCTCCTGTCTTATGGAAAGAACTTGTAAT 60
* * * * *********************************************
consensus_9468#0 TAATTTATCGGTGATTGTAGTGGAGCATGATTGGTTTTGTGACACTTAATAGATTCTAAT 1740
consensus_9468#1 TAATTTATCGGTGATTGTAGTGGAGCATGATTGGTTTTGTGACACTTAATAGATTCTAAT 120
************************************************************
consensus_9468#0 GTATGTGCCCCATTTCAGTACTATCAGAATGTGCAC 1776
consensus_9468#1 GTATGTGCCCCCTTTCAGTACTAAAAAAAA------ 150
*********** *********** * **
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||