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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9470#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1458 fasta sequence
[GGCTGGCGCTGGTGCTCCCGGCGATCAGCTCGCTGGTCGCCGACTACACGGACGACCACACCCGCGGCGCCGCGTTCGGGTGGCTGCAGATGACCTGCAACCTCGGCTCCATCATGGGGGGATCCTTCGGCGTGCTGCTCGCGCCGGTCACCTTCCTCGGCGTCGCCGGCTGGCGCCTGGCGTTCCACGCCGTCGCCCTCGTCAGCGCCGTGCTGGGCATCCTCATGTGGTGCTTCGCCGCCGACCCGCGCGCCAAGTCCAAGACCGCCGCCTCCGCCGCCGAGGAGGCCCGGGAGCTGCTCCGCGACGCCCGCGGCGTCATCGGCGTGCCCACGTTCCAGATCATCGTCGCGCAGGGGATCGCCGGGTCGATACCCTGGTCGGCGCTCAACTTCTCCGCCATGTGGCTCGAGCTCGTCGGCTTCACGCACTGGGAGACCAGCGTCATCACGGGGCTCTACCTCCTCGCCACCGCGCTCGGCGCGCTCTTCGGCGGCCTCGTCGGGGACCCCGTCTCCAGGCGGTTCCCGAACACCGGAAGGATCGCGCTGGCGCAGATCAGCTCGGCGTCGGCGCTCCCGCTCGCCGCCGTCCTGCTCCTCGCGCTGCCGAACGACCCGTCCACCGGCGTCGCGCACGCCGCCGTGTTCTTCATCATGGGGTTCGCCATCTCCTGGAACGCGTCATCCACAAACAACCCAATCTTCGCGGAGATTGTACCGGAGAAGGCGAGAACAACGGTCTACGCTCTCGACAAATGCTTTGAAGCGGTGTTCGCTTCATTCGCGCCACCGATCGTCGGTGTTCTAGCAGAGCAAGTGTTCGGCTACAAGCCGGTCTCCTCTGACGCAAGCGTCGAAACGGACAGAGAAAATGCGGCTGCATTGGCCAAGGCAGTGTACACGGAGATCGCCGTGCCCATGGCCATCTGTTGCCTGACATACACCTTCCTGTACTGCACGTATCCTCGGGACAGAGATCGTGCTCGAAGGAACATTCTGATGGCATCGGATGACCAGCTCTGCCAAGAAGCAGGTGAGAGTGACTCAAGTGAGATTTGTACCCAGGAGGATGAAGAATTTGCTGTTGGTTCCATAAACCAGAGGTTAATACATGCAAGAGAGTAGCATCAGAAGAGGGGCAGCCTGTTTTACAAAGGTCTCGCAATCTTCCAGAGTCTGCACTCTGTTGCTTTCCA-TTTTCAGATTCTCAACTATTGGAGAGCTCTGCCTGAGCAGAATCGCGCTCATCAACTAGTA-TTGGAAGATATATATAGTACCCGAGAGATGTAATTTATACAACATCCTGTGAGTAAGTGCTGCAATTGATTGTTTTCAGGAGCTCCCAAAAAAAGGAGGAAAACAGTGTAATGGCTTATTGGCACTCAGCTTCTCGTTCTTTTTAGTCTTGTACGATTTCTCTAATCAATTTAACTACCAGATGTTCTGACGAAAAAAA]
[+] EMBL CB669755 [GGCTGGCGCTGGTGCTCCCGGCGATCAGCTCGCTGGTCGCCGACTACACGGACGACCACACCCGCGGCGCCGCGTTCGGGTGGCTGCAGATGACCTGCAACCTCGGCTCCATCATGGGGGGATCCTTCGGCGTGCTGCTCGCGCCGGTCACCTTCCTCGGCGTCGCCGGCTGGCGCCTGGCGTTCCACGCCGTCGCCCTCGTCAGCGCCGTGCTGGGCATCCTCATGTGGTGCTTCGCCGCCGACCCGCGCGCCAAGTCCAAGACCGCCGCCTCCGCCGCCGAGGAGGCCCGGGAGCTGCTCCGCGACGCCCGCGGCGTCATCGGCGTGCCCACGTTCCAGATCATCGTCGCGCAGGGGATCGCCGGGTCGATACCCTGGTCGGCGCTCAACTTCTCCGCCATGTGGCTCGAGCTCGTCGGCTTCACGCACTGGGAGACCAGCGTCATCACGGGGCTCTACCTCCTCGCCACCGCGCTCGGCGCGCTCTTCGGCGGCCTCGTCGGGGACCCCGTCTCCAGGCGGTTCCCGAACACCGGAAGGATCGCGCTGGCGCAGATCAGCTCGGCGTCGGCGCTCCCGCTCGCCGCCGTCCTGCTCCTCGCGCTGCCGAACGACCCGTCCACCGGCGTCGCGCACGCCGCCGTGTTCTTCATCATGGGGTTCGCCATCTCCTGGAACGCGTCATCCACAAACAACCCAATCTTCGCGGAGATTGTACCGGAGAAGGCGAGAACAACGGTCTACGCTCTCGACAAATGCTTTGAAGCGGTGTTCGCTTCATTCGCGCCACCGATCG ]
[-] EMBL CB669756 [ GCTCCCGCTCGCCGCCGTCCTGCTCCTCGCGCTGCCGAACGACCCGTCCACCGGCGTCGCGCACGCCGCCGTGTTCTTCATCATGGGGTTCGCCATCTCCTGGAACGCGTCATCCACAAACAACCCAATCTTCGCGGAGATTGTACCGGAGAAGGCGAGAACAACGGTCTACGCTCTCGACAAATGCTTTGAAGCGGTGTTCGCTTCATTCGCGCCACCGATCGTCGGTGTTCTAGCAGAGCAAGTGTTCGGCTACAAGCCGGTCTCCTCTGACGCAAGCGTCGAAACGGACAGAGAAAATGCGGCTGCATTGGCCAAGGCAGTGTACACGGAGATCGCCGTGCCCATGGCCATCTGTTGCCTGACATACACCTTCCTGTACTGCACGTATCCTCGGGACAGAGATCGTGCTCGAAGGAACATTCTGATGGCATCGGATGACCAGCTCTGCCAAGAAGCAGGTGAGAGTGACTCAAGTGAGATTTGTACCCAGGAGGATGAAGAATTTGCTGTTGGTTCCATAAACCAGAGGTTAATACATGCAAGAGAGTAGCATCAGAAGAGGGGCAGCCTGTTTTACAAAGGTCTCGCAATCTTCCAGAGTCTGCACTCTGTTGCTTTCCA TTTTCAGATTCTCAACTATTGGAGAGCTCTGCCTGAGCAGAATCGCGCTCATCAACTAGTA TTGGAAGATATATATAGTACCCGAGAGATGTAATTTATACAACATCCTGTGAGTAAGTGCTGCAATTGATTGTTTTCAGGAGCTCC ]
[+] EMBL OSC953 [ AAGCGTCGAAACGGACAGAGAAAATGCGGCTG ATTGGCCAAGGCAGTGTACACGGAGATCGCCGTGCCCATGG CATCTGTTGCCTGACATACACCTTCCTGTACTGCACGTATCCTCGGGACAGAGATCGTGCTCGAAGGAACATTCTGATGGCATCGGATGACCAGCTCTGCCAAGAAGCAGGTGAGAGTGACTCAAGTGAGATTTGTACCCAGGAGGATGAAGAATTTGCTGTTGGTTCCATAAACCAGAGGTTAATACATGCAAGAGAGTAGCATCAGAAGAGGGGCAGCCTGTTTTACAAAGGTCTCGCAATCTTCCAGAGTCTGCACTCTGTTGCTTTCCATTTTTCAGATTCTCAACTATTGGAGAGCTCTGCCTGAGCNGAATCGCGCTCATCAACTAGTATTTGGAAGATATATATAGTACCCCAGAGATGT ]
[+] EMBL AU163884 [ ACACCTTCCTGTACTGCANGTATCCTCGGNACAGAGATCGTGCTNGAAGGAACATTCTGATGGCATCGGATGACCAGCTCTGCCAAGAAGCAGGTGAGAGTGACTCAAGTGAGATTTGTACCCAGGAGGATGAAGAATTTGCTGTTGGTTCCATAAACCAGAGGTTAATACATGCAAGAGAGTAGCATCAGAAGAGGGGCAGCCTGTTTTACAAAGGTCTCGCAATCTTCCAGAGTCTGCACTCTGTTGCTTTCCA TTTTCAGATTCTCAACTATTGGAGAGCTCTGCCTGAGCAGAATCGCGCTCATCAACTAGTA TTGGAAGATATATATAGTACCCGAGAGATGTAATTTATACAACATCCTGTGAATAAGTGCTGCAATTGATTGTTTTCAGGAGCTACCAAAAAAAGGAGGAAAACAGTGTAATGGCTTATTGGCACTCAGCTTCTCGTTCTTTTTAGTCTTGTACGATTTCTCTAATCAATTTAACTACCAGATGTTCTGACGAAAAAAA]
consensusID : consensus_9470#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 327 fasta sequence
[ATANAACCAGAAGGCTAATACCATGNCCAAGAGAGTAGCATCAGAAGAGGGCAGCCTGTTTTACAAAGGTCTCGCAATCTTCCAGAGTCTGCACTCTGTTGCTTTCCATTTTCAGATTCTCAACTATTGGAGAGCTCTGCCTGAGCAGAATCGCGCTCATCAACTAGTATTGGAAGATATATATAGTACCCGAGAGATGTAATTTATACAACATCCTGTGAATAAGTGCTGCAATTGATTGTTTTCAGGAGCTNACCAAAAAAAGGAGGAAAACAGTGTNAATGGCTTNATTGGTCCACTCAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU095502 [ATANAACCAGAAGGCTAATACCATGNCCAAGAGAGTAGCATCAGAAGAGGGCAGCCTGTTTTACAAAGGTCTCGCAATCTTCCAGAGTCTGCACTCTGTTGCTTTCCATTTTCAGATTCTCAACTATTGGAGAGCTCTGCCTGAGCAGAATCGCGCTCATCAACTAGTATTGGAAGATATATATAGTACCCGAGAGATGTAATTTATACAACATCCTGTGAATAAGTGCTGCAATTGATTGTTTTCAGGAGCTNACCAAAAAAAGGAGGAAAACAGTGTNAATGGCTTNATTGGTCCACTCAAAAAAAAAAAAAAA ]
[+] EMBL AU070190 [ CGCAATCTTCCAGAGTCTGCACTCTGTTGCTTTCCATTTTCAGATTCTCAACTATTGGAGNGCTCTNCCTGAGCAGAATCGCGNTCATCAANTAGTATTGGAAGATATNTNTAGTACCCGAGAGATGTAATTTATNCAACATCCTGTGAATAAGTGCTGCAATTGATTNTTTTCAGGAGCT ACCAAAAAAAGGAGGAAAACAGTGT AATGGCTT ATTGG CACTCAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9470#0 GGCTGGCGCTGGTGCTCCCGGCGATCAGCTCGCTGGTCGCCGACTACACGGACGACCACA 60
consensus_9470#1 ------------------------------------------------------------
consensus_9470#0 CCCGCGGCGCCGCGTTCGGGTGGCTGCAGATGACCTGCAACCTCGGCTCCATCATGGGGG 120
consensus_9470#1 ------------------------------------------------------------
consensus_9470#0 GATCCTTCGGCGTGCTGCTCGCGCCGGTCACCTTCCTCGGCGTCGCCGGCTGGCGCCTGG 180
consensus_9470#1 ------------------------------------------------------------
consensus_9470#0 CGTTCCACGCCGTCGCCCTCGTCAGCGCCGTGCTGGGCATCCTCATGTGGTGCTTCGCCG 240
consensus_9470#1 ------------------------------------------------------------
consensus_9470#0 CCGACCCGCGCGCCAAGTCCAAGACCGCCGCCTCCGCCGCCGAGGAGGCCCGGGAGCTGC 300
consensus_9470#1 ------------------------------------------------------------
consensus_9470#0 TCCGCGACGCCCGCGGCGTCATCGGCGTGCCCACGTTCCAGATCATCGTCGCGCAGGGGA 360
consensus_9470#1 ------------------------------------------------------------
consensus_9470#0 TCGCCGGGTCGATACCCTGGTCGGCGCTCAACTTCTCCGCCATGTGGCTCGAGCTCGTCG 420
consensus_9470#1 ------------------------------------------------------------
consensus_9470#0 GCTTCACGCACTGGGAGACCAGCGTCATCACGGGGCTCTACCTCCTCGCCACCGCGCTCG 480
consensus_9470#1 ------------------------------------------------------------
consensus_9470#0 GCGCGCTCTTCGGCGGCCTCGTCGGGGACCCCGTCTCCAGGCGGTTCCCGAACACCGGAA 540
consensus_9470#1 ------------------------------------------------------------
consensus_9470#0 GGATCGCGCTGGCGCAGATCAGCTCGGCGTCGGCGCTCCCGCTCGCCGCCGTCCTGCTCC 600
consensus_9470#1 ------------------------------------------------------------
consensus_9470#0 TCGCGCTGCCGAACGACCCGTCCACCGGCGTCGCGCACGCCGCCGTGTTCTTCATCATGG 660
consensus_9470#1 ------------------------------------------------------------
consensus_9470#0 GGTTCGCCATCTCCTGGAACGCGTCATCCACAAACAACCCAATCTTCGCGGAGATTGTAC 720
consensus_9470#1 ------------------------------------------------------------
consensus_9470#0 CGGAGAAGGCGAGAACAACGGTCTACGCTCTCGACAAATGCTTTGAAGCGGTGTTCGCTT 780
consensus_9470#1 ------------------------------------------------------------
consensus_9470#0 CATTCGCGCCACCGATCGTCGGTGTTCTAGCAGAGCAAGTGTTCGGCTACAAGCCGGTCT 840
consensus_9470#1 ------------------------------------------------------------
consensus_9470#0 CCTCTGACGCAAGCGTCGAAACGGACAGAGAAAATGCGGCTGCATTGGCCAAGGCAGTGT 900
consensus_9470#1 ------------------------------------------------------------
consensus_9470#0 ACACGGAGATCGCCGTGCCCATGGCCATCTGTTGCCTGACATACACCTTCCTGTACTGCA 960
consensus_9470#1 ------------------------------------------------------------
consensus_9470#0 CGTATCCTCGGGACAGAGATCGTGCTCGAAGGAACATTCTGATGGCATCGGATGACCAGC 1020
consensus_9470#1 ------------------------------------------------------------
consensus_9470#0 TCTGCCAAGAAGCAGGTGAGAGTGACTCAAGTGAGATTTGTACCCAGGAGGATGAAGAAT 1080
consensus_9470#1 ------------------------------------------------------------
consensus_9470#0 TTGCTGTTGGTTCCATAAACCAGAGGTTAATAC---ATGCAAGAGAGTAGCATCAGAAGA 1137
consensus_9470#1 ------------ATANAACCAGAAGGCTAATACCATGNCCAAGAGAGTAGCATCAGAAGA 48
* ** * *** ****** *********************
consensus_9470#0 GGGGCAGCCTGTTTTACAAAGGTCTCGCAATCTTCCAGAGTCTGCACTCTGTTGCTTTCC 1197
consensus_9470#1 GGG-CAGCCTGTTTTACAAAGGTCTCGCAATCTTCCAGAGTCTGCACTCTGTTGCTTTCC 107
*** ********************************************************
consensus_9470#0 ATTTTCAGATTCTCAACTATTGGAGAGCTCTGCCTGAGCAGAATCGCGCTCATCAACTAG 1257
consensus_9470#1 ATTTTCAGATTCTCAACTATTGGAGAGCTCTGCCTGAGCAGAATCGCGCTCATCAACTAG 167
************************************************************
consensus_9470#0 TATTGGAAGATATATATAGTACCCGAGAGATGTAATTTATACAACATCCTGTGAGTAAGT 1317
consensus_9470#1 TATTGGAAGATATATATAGTACCCGAGAGATGTAATTTATACAACATCCTGTGAATAAGT 227
****************************************************** *****
consensus_9470#0 GCTGCAATTGATTGTTTTCAGGAGCTC-CCAAAAAAAGGAGGAAAACAGTGTAA-TGGCT 1375
consensus_9470#1 GCTGCAATTGATTGTTTTCAGGAGCTNACCAAAAAAAGGAGGAAAACAGTGTNAATGGCT 287
************************** ************************ * *****
consensus_9470#0 TATTGGCACTCAGCTTCTCGTTCTTTTTAGTCTTGTACGATTTCTCTAATCAATTTAACT 1435
consensus_9470#1 TNATTG-------------GTCCACTCAAAAAAAAAAAAAAAAAAAAAAAAAA------- 327
* * * ** * * * * * ** **
consensus_9470#0 ACCAGATGTTCTGACGAAAAAAA 1458
consensus_9470#1 -----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||