These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9476#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1304 fasta sequence [CACTCCACTCCCCACCTCACCTCGCCTTTTTAGAGAGAGAAAGAGAAGAGAGCGAGCTCGACGAGGAGAGAGAGAGAGAGAGAGAGGAGTCACCTCACCTGCACCTGAGCTAGAGAGAGAGAGAGAGAGAAGAGGAGGAGGGTGGTGGAGGAGGAGGCCGGGAGGGGGAGATGGAGAGGCCGGCGCCGGTGAGGAAGTCCCACACGTCGACGGCCGACCTGCTGACGTGGCCGGAGGGCGCGGCCCAGGAGCTCGCCGCCGGGGCCACGCCGCCGCCCAACCGCCGGCCGCACCAGCCGTCGGAGGCGATCAGTAAGGTGGTGTTCGGCGGGCAGGTGACCGAGGAGGAGTTCGAGAGCCTCAACAAGAGGAAACCATGCTCAGCTCCCAAATGGAAGGAGATGACAGGAAGCGGCATATTTGCAGCGGAAGGCGAGGTTGAGGAAGACGAGTCAGCCAATGCTTCTGCAACGCCCGTCCGAACGGTTTCTAAGAATTATCAGGCCATTAGCACTATAAGTCATATCTCATTCGCGGAGGAAGAAAGTGTTTCTCCAAAAAAGCCGACTTCGATAGCTGAGGTGGCGAAGCAGCGCGAGCTAAGTGGCACGCTTCAGAGCGAGGATGAGAGTAAGATGAAGAGGCAGATATCCAATGCGAAATCGAAGGAGCTCAGCGGCCATGACATCTTTGCTCCTCCAGAAGATCCCAGGCCACGCAACTCCGCGAACGGCTCGACCTCACAAACCCCGGGCAAAAATGCACAAGTGAGCACCATCACGTTCGGAGAGGCTGACACCGACAGCGTGGTGAAAACGGCGAAGAAGATCCCGGAGAAGAAGCTGACGGACCTGACGGGCAACGATATCTTCAAAGGCGATGCTGCCCCGGGGACGGCGGAGAAGCACCTGAGCACGGCGAAGCTGAAGGAGATGACCGGCAGCGACATCTTCGCGGACGGCAAAGCGCCGTCGCGGGACTACCTTGGTGGG-AT-CCGCAA--GCCCCCCGGCGGCGAGAGCAGCATCGCGCTGGTCTAACAAACAAAACAAAACCCCCTGATGGATGGACATAGCCTACTACGACATTCTTGGACTCGTCCTCCCCGTTGCCGTCATT-AGGAGTGATTTTTTTCTTCTAGGAGAGCTTCTTTGATGAGACTGATCGATTGAACTGCTGCTGCATGGTTTGTTTCCGTTTCTTTTTCTCGGCTTCTTTTTTTTTTGTTTAATCTGATCGATGATGGTGTGGGTGCGGCAAAGCAACGGTGATGGATATCTAATTTAACATTTGGTGTGCAAAAAAAA] [+] EMBL AK063642 [CACTCCACTCCCCACCTCACCTCGCCTTTTTAGAGAGAGAAAGAGAAGAGAGCGAGCTCGACGAGGAGAGAGAGAGAGAGAGAGAGGAGTCACCTCACCTGCACCTGAGCTAGAGAGAGAGAGAGAGAGAAGAGGAGGAGGGTGGTGGAGGAGGAGGCCGGGAGGGGGAGATGGAGAGGCCGGCGCCGGTGAGGAAGTCCCACACGTCGACGGCCGACCTGCTGACGTGGCCGGAGGGCGCGGCCCAGGAGCTCGCCGCCGGGGCCACGCCGCCGCCCAACCGCCGGCCGCACCAGCCGTCGGAGGCGATCAGTAAGGTGGTGTTCGGCGGGCAGGTGACCGAGGAGGAGTTCGAGAGCCTCAACAAGAGGAAACCATGCTCAGCTCCCAAATGGAAGGAGATGACAGGAAGCGGCATATTTGCAGCGGAAGGCGAGGTTGAGGAAGACGAGTCAGCCAATGCTTCTGCAACGCCCGTCCGAACGGTTTCTAAGAATTATCAGGCCATTAGCACTATAAGTCATATCTCATTCGCGGAGGAAGAAAGTGTTTCTCCAAAAAAGCCGACTTCGATAGCTGAGGTGGCGAAGCAGCGCGAGCTAAGTGGCACGCTTCAGAGCGAGGATGAGAGTAAGATGAAGAGGCAGATATCCAATGCGAAATCGAAGGAGCTCAGCGGCCATGACATCTTTGCTCCTCCAGAAGATCCCAGGCCACGCAACTCCGCGAACGGCTCGACCTCACAAACCCCGGGCAAAAATGCACAAGTGAGCACCATCACGTTCGGAGAGGCTGACACCGACAGCGTGGTGAAAACGGCGAAGAAGATCCCGGAGAAGAAGCTGACGGACCTGACGGGCAACGATATCTTCAAAGGCGATGCTGCCCCGGGGACGGCGGAGAAGCACCTGAGCACGGCGAAGCTGAAGGAGATGACCGGCAGCGACATCTTCGCGGACGGCAAAGCGCCGTCGCGGGACTACCTTGGTGGG AT CCGCAA GCCCCCCGGCGGCGAGAGCAGCATCGCGCTGGTCTAACAAACAAAACAAAACCCCCTGATGGATGGACATAGCCTACTACGACATTCTTGGACTCGTCCTCCCCGTTGCCGTCATT AGGAGTGATTTTTTTCTTCTAGGAGAGCTTCTTTGATGAGACTGATCGATTGAACTGCTGCTGCATGGTTTGTTTCCGTTTCTTTTTCTCGGCTTCTTTTTTTTTTGTTTAATCTGATCGATGATGGTGTGGGTGCGGCAAAGCAACGGTGATGGATATCTAATTTAACA ] [+] EMBL CA755946 [ ACACGTCGACGGCCGACCTGCTGACGTGGCCGGAGGGCGCGGCCCAGGAGCTCGCCGCCGGGGCCACGCCGCCGCCCAACCGCCGGCCGCACCAGCCGTCGGAGGCGATCAGTAAGGTGGTGTTCGGCGGGCAGGTGACCGAGGAGGAGTTCGAGAGCCTCAACAAGAGGAAACCATGCTCAGCTCCCAAATGGAAGGAGATGACAGGAAGCGGCATATTTGCAGCGGAAGGCGAGGTTGAGGAAGACGAGTCAGCCAATGCTTCTGCAACGCCCGTCCGAACGGTTTCTAAGAATTATCAGGCCATTAGCACTATAAGTCATATCTCATTCGCGGAGGAAGAAAGTGTTTCTCCAAAAAAGCCGACTTCGATAGCTGAGGTGGCGAAGCAGCGCGAGCTAAGTGGCACGCTTCAGAGCGAGGATGAGAGTAAGATGAAGAGGCAGATATCCCATGCGAAATCGAAGGAGCTCAGCGGCCATGACATCTTTGCTCCTCCAGAAGATCCCAGGCCACGCAACTCCGCGAACGGCTCGACCTCACAAACCCCGGGCAAAAATGCACAAGTGAGCACCATCACGTTCGGAGAGGCTGACACCGACNGC ] [+] EMBL CA999602 [ AAGGAGATGACAGGAAGCGGCATATTTGCAGCGGAAGGCGAGGTTGAGGAAGACGAGTCAGCCAATGCTTCTGCAACGCCCGTCCGAACGGTTTCTAAGAATTATCAGGCCATTAGCACTATAAGTCATATCTCATTCGCGGAGGAAGAAAGTGTTTCTCCAAA ] [+] EMBL CA999412 [ GTTGAGGAAGACGAGTCAGCCAATGCTTCTGCAACGCCCGTCCGAACGGTTTCTAAGAATTATCAGGCCATTAGCACTATAAGTCATATCTCATTCGCGGAGGAAGAAAGTGTTTCTCCAAAAAAGCCGACTTCGATAGCTGAGGTGGCGAAGCAGCGCGAGCTAAGTGGCACGCTTCAGAGCGAGGATGAGAGTAAGATGAAGAGGCAGATATCCAATGCGAAATCGAAGGAGCTCAGCGGCCATGACATCTTTGCTCCTCCAGAAGATCCCAGGCCACGCAACTCCGCGAACGGCTCGACCTCACAAACCCCGGGCAAAAATGCACAAGTGAGCACCATCACGTTCGGAGAGGCTGACACCGACAGCGTGGTGAAAACGGCGAAGAAGATCCCGGAGAAGAAGCTGACGGACCTGACGGGCAACGATATCTTCAAAGGCGATGCTGCCCCGGGGACGGCGGAGAAGCACCTGAGCACGGCGAAGCTGAAGGAGATGACCGGCAGCGACATCTTCGCGGACGGCAAAGCGCCGTCGCGGGACTACCTTGGTGGG ATNCCGC A GCCCCCCGGCGGCGAGAGCAGCATCGCGCTGGTCT ACAAACAAAACAAAACCCCCTGATGGATGGACATAGCCTACTACGACATTCTTGGACTCGTCCTCCCCGTTGCCGTCATT AGGAGTGAT ] [+] EMBL AU070310 [ GGTGGGAAC CCGAAAACCCCCCCCGGCGGCAAGAGCAGCATCGCGCTGGTCTAACAAACAAAACAAAACCCCCTGATGGATGGACATAGCCTACTACGANATTCTTGGACTCGTCCTCCCCGTTNCCGTCATTAANNNNTGATTTTTTTCTTCTANNANAGCTTCTTTGATGAGACTGATCGATTGAACTGCTGCTGCATGGTTTGTTTCCGTTTCTTTTTCTCGGCNTCTTTTTTTTTTGTTTAATCTGATCGATGATGGTGTGGGTGCGGCAAAGCAACGGTGATGGATATCTNATTTAANATTTGGTGTGCAAAAAAAA] consensusID : consensus_9476#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 866 fasta sequence [ACAGCGTGGTGAAAACGGCGAAGAAGATCCCGGAGAAGAAGCTGACGGACCTGACGGGCAACGATATCTTCAAAGGCGATGCTGCCCCGGGGACGGCGGAGAAGCACCTGAGCACGGCGAAGCTGAAGGAGATGACCGGCAGCGACATCTTCGCGGACGGCAAAGCGCCGTCGCGGGACTACCTTGGTGGGATCCGCAAGCCCCCCGGCGGCGAGAGCAGCATCGCGCTGGTCTAACAAACAAAACAAAACCCCCTGATGGATGGACATAGCCTACTACGACATTCTTGGACTCGTCCTCCCCGTTGCCGTCATTAGGAGTGATTTTTTTCTTCTAGGAGAGCTTCTTTGATGAGACTGATCGATTGAACTGCTGCTGCATGGTTTGTTTCCGGTTCTTTTANNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAANANAAAANNAAAAAAANNNANNNNTTTTAAGAGGGGNCNAAANACCCAAANNAGGCCAAAANAAAAAAATAATACCCGCGGGGGGGGGGCGCGGTTTCAAACCCTTTTTCTTTTGGGAAAAATCTTGGCGCGCCCCCCTTGTACGCCGCTTTTTCAAACAACACCCGTGTGACAACACGTGTGGGGATATAACAAAATAAGTCCCCTCTGGAGAGACATCTTCCCCATATATTGTNGAGGGTTAAAATGGAAAAGGGGCCCCCCACTCCTTACCCCTCCAATAAGCGGGGGGGGTCTGTGGGGGTGATAACCCACNTCTCTCCTATATCCTTTTCTAAACGCTCCGTGGGGGGGGGGGTTCTNCTCAATCTTCCCCTCCTATTTC] [+] EMBL CA756906 [ACAGCGTGGTGAAAACGGCGAAGAAGATCCCGGAGAAGAAGCTGACGGACCTGACGGGCAACGATATCTTCAAAGGCGATGCTGCCCCGGGGACGGCGGAGAAGCACCTGAGCACGGCGAAGCTGAAGGAGATGACCGGCAGCGACATCTTCGCGGACGGCAAAGCGCCGTCGCGGGACTACCTTGGTGGGATCCGCAAGCCCCCCGGCGGCGAGAGCAGCATCGCGCTGGTCTAACAAACAAAACAAAACCCCCTGATGGATGGACATAGCCTACTACGACATTCTTGGACTCGTCCTCCCCGTTGCCGTCATTAGGAGTGATTTTTTTCTTCTAGGAGAGCTTCTTTGATGAGACTGATCGATTGAACTGCTGCTGCATGGTTTGTTTCCGGTTCTTTTANNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAANANAAAANNAAAAAAANNNANNNNTTTTAAGAGGGGNCNAAANACCCAAANNAGGCCAAAANAAAAAAATAATACCCGCGGGGGGGGGGCGCGGTTTCAAACCCTTTTTCTTTTGGGAAAAATCTTGGCGCGCCCCCCTTGTACGCCGCTTTTTCAAACAACACCCGTGTGACAACACGTGTGGGGATATAACAAAATAAGTCCCCTCTGGAGAGACATCTTCCCCATATATTGTNGAGGGTTAAAATGGAAAAGGGGCCCCCCACTCCTTACCCCTCCAATAAGCGGGGGGGGTCTGTGGGGGTGATAACCCACNTCTCTCCTATATCCTTTTCTAAACGCTCCGTGGGGGGGGGGGTTCTNCTCAATCTTCCCCTCCTATTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9476#0 CACTCCACTCCCCACCTCACCTCGCCTTTTTAGAGAGAGAAAGAGAAGAGAGCGAGCTCG 60 consensus_9476#1 ------------------------------------------------------------ consensus_9476#0 ACGAGGAGAGAGAGAGAGAGAGAGAGGAGTCACCTCACCTGCACCTGAGCTAGAGAGAGA 120 consensus_9476#1 ------------------------------------------------------------ consensus_9476#0 GAGAGAGAGAAGAGGAGGAGGGTGGTGGAGGAGGAGGCCGGGAGGGGGAGATGGAGAGGC 180 consensus_9476#1 ------------------------------------------------------------ consensus_9476#0 CGGCGCCGGTGAGGAAGTCCCACACGTCGACGGCCGACCTGCTGACGTGGCCGGAGGGCG 240 consensus_9476#1 ------------------------------------------------------------ consensus_9476#0 CGGCCCAGGAGCTCGCCGCCGGGGCCACGCCGCCGCCCAACCGCCGGCCGCACCAGCCGT 300 consensus_9476#1 ------------------------------------------------------------ consensus_9476#0 CGGAGGCGATCAGTAAGGTGGTGTTCGGCGGGCAGGTGACCGAGGAGGAGTTCGAGAGCC 360 consensus_9476#1 ------------------------------------------------------------ consensus_9476#0 TCAACAAGAGGAAACCATGCTCAGCTCCCAAATGGAAGGAGATGACAGGAAGCGGCATAT 420 consensus_9476#1 ------------------------------------------------------------ consensus_9476#0 TTGCAGCGGAAGGCGAGGTTGAGGAAGACGAGTCAGCCAATGCTTCTGCAACGCCCGTCC 480 consensus_9476#1 ------------------------------------------------------------ consensus_9476#0 GAACGGTTTCTAAGAATTATCAGGCCATTAGCACTATAAGTCATATCTCATTCGCGGAGG 540 consensus_9476#1 ------------------------------------------------------------ consensus_9476#0 AAGAAAGTGTTTCTCCAAAAAAGCCGACTTCGATAGCTGAGGTGGCGAAGCAGCGCGAGC 600 consensus_9476#1 ------------------------------------------------------------ consensus_9476#0 TAAGTGGCACGCTTCAGAGCGAGGATGAGAGTAAGATGAAGAGGCAGATATCCAATGCGA 660 consensus_9476#1 ------------------------------------------------------------ consensus_9476#0 AATCGAAGGAGCTCAGCGGCCATGACATCTTTGCTCCTCCAGAAGATCCCAGGCCACGCA 720 consensus_9476#1 ------------------------------------------------------------ consensus_9476#0 ACTCCGCGAACGGCTCGACCTCACAAACCCCGGGCAAAAATGCACAAGTGAGCACCATCA 780 consensus_9476#1 ------------------------------------------------------------ consensus_9476#0 CGTTCGGAGAGGCTGACACCGACAGCGTGGTGAAAACGGCGAAGAAGATCCCGGAGAAGA 840 consensus_9476#1 ---------------------ACAGCGTGGTGAAAACGGCGAAGAAGATCCCGGAGAAGA 39 *************************************** consensus_9476#0 AGCTGACGGACCTGACGGGCAACGATATCTTCAAAGGCGATGCTGCCCCGGGGACGGCGG 900 consensus_9476#1 AGCTGACGGACCTGACGGGCAACGATATCTTCAAAGGCGATGCTGCCCCGGGGACGGCGG 99 ************************************************************ consensus_9476#0 AGAAGCACCTGAGCACGGCGAAGCTGAAGGAGATGACCGGCAGCGACATCTTCGCGGACG 960 consensus_9476#1 AGAAGCACCTGAGCACGGCGAAGCTGAAGGAGATGACCGGCAGCGACATCTTCGCGGACG 159 ************************************************************ consensus_9476#0 GCAAAGCGCCGTCGCGGGACTACCTTGGTGGGATCCGCAAGCCCCCCGGCGGCGAGAGCA 1020 consensus_9476#1 GCAAAGCGCCGTCGCGGGACTACCTTGGTGGGATCCGCAAGCCCCCCGGCGGCGAGAGCA 219 ************************************************************ consensus_9476#0 GCATCGCGCTGGTCTAACAAACAAAACAAAACCCCCTGATGGATGGACATAGCCTACTAC 1080 consensus_9476#1 GCATCGCGCTGGTCTAACAAACAAAACAAAACCCCCTGATGGATGGACATAGCCTACTAC 279 ************************************************************ consensus_9476#0 GACATTCTTGGACTCGTCCTCCCCGTTGCCGTCATTAGGAGTGATTTTTTTCTTCTAGGA 1140 consensus_9476#1 GACATTCTTGGACTCGTCCTCCCCGTTGCCGTCATTAGGAGTGATTTTTTTCTTCTAGGA 339 ************************************************************ consensus_9476#0 GAGCTTCTTTGATGAGACTGATCGATTGAACTGCTGCTGCATGGTTTGTTTCCGTTTCTT 1200 consensus_9476#1 GAGCTTCTTTGATGAGACTGATCGATTGAACTGCTGCTGCATGGTTTGTTTCCGGTTCTT 399 ****************************************************** ***** consensus_9476#0 TTTCTCGGCTTCTTTTTTTTTTGTTTAATCTGATCGATGATGGTGTGGGTGCGGCAAAGC 1260 consensus_9476#1 TTANNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAA 459 ** ** * * * *** consensus_9476#0 AACGGTGATGGATATCTAATTTAACATTTGGTGTGCAAAAAAAA---------------- 1304 consensus_9476#1 AAAAAAAAAAAAAAANAAAAAANANAAAANNAAAAAAANNNANNNNTTTTAAGAGGGGNC 519 ** * * * ** * * ** * consensus_9476#0 ------------------------------------------------------------ consensus_9476#1 NAAANACCCAAANNAGGCCAAAANAAAAAAATAATACCCGCGGGGGGGGGGCGCGGTTTC 579 consensus_9476#0 ------------------------------------------------------------ consensus_9476#1 AAACCCTTTTTCTTTTGGGAAAAATCTTGGCGCGCCCCCCTTGTACGCCGCTTTTTCAAA 639 consensus_9476#0 ------------------------------------------------------------ consensus_9476#1 CAACACCCGTGTGACAACACGTGTGGGGATATAACAAAATAAGTCCCCTCTGGAGAGACA 699 consensus_9476#0 ------------------------------------------------------------ consensus_9476#1 TCTTCCCCATATATTGTNGAGGGTTAAAATGGAAAAGGGGCCCCCCACTCCTTACCCCTC 759 consensus_9476#0 ------------------------------------------------------------ consensus_9476#1 CAATAAGCGGGGGGGGTCTGTGGGGGTGATAACCCACNTCTCTCCTATATCCTTTTCTAA 819 consensus_9476#0 ----------------------------------------------- consensus_9476#1 ACGCTCCGTGGGGGGGGGGGTTCTNCTCAATCTTCCCCTCCTATTTC 866 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||