These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9479#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1805 fasta sequence [GCAAGCAACAGAGCCGAGCCGAGACCTCCTCTTTAGATAAGGAAGCAACAAGCTAAGAAGCAGCATCATTCACTCCACGAGCTAGCAAAAAGGATAGCAATGGTGGAACCGGGGAGAGCGCGGGAGACGAAGGTCACCGCCTCAGCCTCAAGCTCTGCAGGCTCAGACGCCGCTGTCATGAAGAAGAAGAAGAAGAAGAAGAAGAAGCTGGTGGTAGCAAGCAGGAAGGTGGATGAGAAAGACAAGAAGCAGGTGGATTACAAGTGCAGTAGAAGCAGCGGCAGAGACGAGTGCTGCAAGGTGGAGAGCCGTCATCAGCAGTGCACAGAGCCGGAGAGCCCTTCCTACAGGTTAGCTCTCAGGAGCCTCTTCTCGTGCAGAAACAGCAGCAGCAGCAGCCACGCCGGCCACCACCACCACCGCGCCGCCGACGGCAAGAAGCTCGGCTGCAATTCCGCCTCCATCTGCAAGGTCAAGCAAGACAACCCGATGCAGCAGCACATGCGCAGGGCGGAGGATGAGCTCAAGGTGAAGGACAAGCCGCCGGTCGCCGAGCCGTACTGCAAGCGCAGAGCTTCGGTGAGCGCGTGCAACATCAGCAGCGAGCGGTCGGTGAAGAAGTCAGTGAAGCAGCAGCAGCAGGAGGCGAGCAGCAGCTTGCAGTCGTCGGCGTCGATATCGGCGTCGTCGTGTTCGTCGACGGCGGGTGGTGGGGGGTCGTTCCGGGGGATGCAGCAGTTGAGCCTGAGGCGGCTGTCGGGGTGCTACGAGTGCCACATGGTGGTGGATCCCATCAGCGGCGTCTTCCGGGACAGCTCCTCCATGAGGGCCACCATCTGCTCCTGCCCCGACTGCGGCGAGATCTTCGTCAGGCCCGACTCCCTCCACCTCCACCAGTCCATCAGGCATGCAGTGTCGGAGCTGGGGGCGGAGGACACGAGCAGGAACATAATATCGATAATATTCCAGTCGAGCTGGCTGAAGAAGCAGAGCCCCGTGTGCGCCATCGACCGCATCCTCAAGGTCCACAACGCCGCCCGCACCCTCGCCCGCTTCGACGACTACCGCGCCGCCGTCAAGGCCAAAGCAATGGCCCACCGCCACCCTCGCTGCACCGCCGACGGCAACGAGCTCCTCCGCTTCCACTGCGCCACCCTCTCCTGCGACCTCGGCCTCCACGGCGCCACCCACCTCTGCGACCACCTCTCCTGCGCCGCCTGCGCCATCATCCGCCACGGCTTCAGGCCGCCCGCGCCGGGGGCCGGCATCCGCACCATGGCCACCAGCGGCCGCGCCCACGACGCCGTCGTCTCGTCCGGGTCGGAGGGCGACCGCCGGGCGATGCTGGTGTGCCGGGTGATCGCCGGCCGGGTGAGGAGGGAGGAGGCGGCGGCGGCGGCGGCGGAGGAAGAGGAGGAGGAGTACGACTCGGTGGCCGGGACGACGCCGGGGCTGTACTCCAACCTGGACGAGCTGGACGTCTTCAACCCCACAGCCATTCTCCCTTGCTTTGTCGTCGTCTACAGGGCCTGATCGATTAGTGATCATTAACCAATAATAATAATCTTAGCTAGCATCATTTCCTTCACTCTTCGTTAATTGCATGTAATCAATCGATCGATCGATGATGATGATGATCCCATTTATAATTAATTAATTCATCGTTAATGTCTGATTATTGTACTATCTGATCGATCGATCGGTATTGACTAGTGATCAGCGTATCAATCAATTTGTACAATCAGATAGATGTTTGTTAGTTTCTTCTACTGAAGGAGGAGTACATTATTGCATACTAGAGCTAA] [+] EMBL AK099856 [GCAAGCAACAGAGCCGAGCCGAGACCTCCTCTTTAGATAAGGAAGCAACAAGCTAAGAAGCAGCATCATTCACTCCACGAGCTAGCAAAAAGGATAGCAATGGTGGAACCGGGGAGAGCGCGGGAGACGAAGGTCACCGCCTCAGCCTCAAGCTCTGCAGGCTCAGACGCCGCTGTCATGAAGAAGAAGAAGAAGAAGAAGAAGAAGCTGGTGGTAGCAAGCAGGAAGGTGGATGAGAAAGACAAGAAGCAGGTGGATTACAAGTGCAGTAGAAGCAGCGGCAGAGACGAGTGCTGCAAGGTGGAGAGCCGTCATCAGCAGTGCACAGAGCCGGAGAGCCCTTCCTACAGGTTAGCTCTCAGGAGCCTCTTCTCGTGCAGAAACAGCAGCAGCAGCAGCCACGCCGGCCACCACCACCACCGCGCCGCCGACGGCAAGAAGCTCGGCTGCAATTCCGCCTCCATCTGCAAGGTCAAGCAAGACAACCCGATGCAGCAGCACATGCGCAGGGCGGAGGATGAGCTCAAGGTGAAGGACAAGCCGCCGGTCGCCGAGCCGTACTGCAAGCGCAGAGCTTCGGTGAGCGCGTGCAACATCAGCAGCGAGCGGTCGGTGAAGAAGTCAGTGAAGCAGCAGCAGCAGGAGGCGAGCAGCAGCTTGCAGTCGTCGGCGTCGATATCGGCGTCGTCGTGTTCGTCGACGGCGGGTGGTGGGGGGTCGTTCCGGGGGATGCAGCAGTTGAGCCTGAGGCGGCTGTCGGGGTGCTACGAGTGCCACATGGTGGTGGATCCCATCAGCGGCGTCTTCCGGGACAGCTCCTCCATGAGGGCCACCATCTGCTCCTGCCCCGACTGCGGCGAGATCTTCGTCAGGCCCGACTCCCTCCACCTCCACCAGTCCATCAGGCATGCAGTGTCGGAGCTGGGGGCGGAGGACACGAGCAGGAACATAATATCGATAATATTCCAGTCGAGCTGGCTGAAGAAGCAGAGCCCCGTGTGCGCCATCGACCGCATCCTCAAGGTCCACAACGCCGCCCGCACCCTCGCCCGCTTCGACGACTACCGCGCCGCCGTCAAGGCCAAAGCAATGGCCCACCGCCACCCTCGCTGCACCGCCGACGGCAACGAGCTCCTCCGCTTCCACTGCGCCACCCTCTCCTGCGACCTCGGCCTCCACGGCGCCACCCACCTCTGCGACCACCTCTCCTGCGCCGCCTGCGCCATCATCCGCCACGGCTTCAGGCCGCCCGCGCCGGGGGCCGGCATCCGCACCATGGCCACCAGCGGCCGCGCCCACGACGCCGTCGTCTCGTCCGGGTCGGAGGGCGACCGCCGGGCGATGCTGGTGTGCCGGGTGATCGCCGGCCGGGTGAGGAGGGAGGAGGCGGCGGCGGCGGCGGCGGAGGAAGAGGAGGAGGAGTACGACTCGGTGGCCGGGACGACGCCGGGGCTGTACTCCAACCTGGAAGAGCTGGACGTCTTCAACCCCACAGCCATTCTCCCTTGCTTTGTCGTCGTCTACAGGGCCTGATCGATTAGTGATCATTAACCAATAATAATAATCTTAGCTAGCATCATTTCCTTCACTCTTCGTTAATTGCATGTAATCAATCGATCGATCGATGATGATGATGATCCCATTTATAATTAATTAATTCAT ] [+] EMBL AU070408 [ CAATGGTGGAACCGGGGAGAGCGCGGGAGACGAAGGTCACCGCCTCAGCCTCAAGCTCTGCAGGCTCAGACNCCGCTGTCATGAAGAAGAAGAAGAAGAAGAAGAAGAAGCTGGTGGTAGCAAGCAGGAAGGTGGATGAGAAAGACAAGAAGCAGGTGGATTACAAGTGCAGTAGAAGCAGCGGCAGAGACGAGTGCTGCAAGGTGGAGAGCCGTCATCAGCAGTGCACAGAGCCGGAGAGCCCTTCCTACAGGTTAGCTCTCAGGAGCCTCTTCTCGTGCAGAAACAGCAGCAGCAGCAGCCACGCCGGCCACCACCACCACCGCGCCGCCGACGGCAAGAAGCTCGGCTGCAATTCCGCCTCCATCTGCAA GTCAAGCAAGACAACC ] [+] EMBL C74440 [ ACCGGGGAGAGCGCGGGAGACGAAGGTCACCGCCTCAGCCTCAAGCTCTGCAGGCTCAGACGCCGCTGTCATGAAGAAGAAGAAGAAGAAGAAGAAGAAGCTGGTGGTAGCAAGCAGGAAGGTGGATNAGAAAGACAAGAAGCAGGTGGATTACAAGTGCAGTAGAAGCAGCGGCAGANACGAGTNCTGCAAGGTGGAGAGCCGTCATCAGCAGTTCACAGAGCCGGAGAGCCCTTCCTACAGGTTAGCTCTCAGGAGCCTCTTCTCGTGCAGAAACAGCAGCAGCAGCAGCTACGCCGGGCACCACCACCACCGnggcc ] [+] EMBL AK105834 [ AGTGCAGTAGAAGCAGCGGCAGAGACGAGTGCTGCAAGGTGGAGAGCCGTCATCAGCAGTGCACAGAGCCGGAGAGCCCTTCCTACAGGTTAGCTCTCAGGAGCCTCTTCTCGTGCAGAAACAGCAGCAGCAGCAGCCACGCCGGCCACCACCACCACCGCGCCGCCGACGGCAAGAAGCTCGGCTGCAATTCCGCCTCCATCTGCAAGGTCAAGCAAGACAACCCGATGCAGCAGCACATGCGCAGGGCGGAGGATGAGCTCAAGGTGAAGGACAAGCCGCCGGTCGCCGAGCCGTACTGCAAGCGCAGAGCTTCGGTGAGCGCGTGCAACATCAGCAGCGAGCGGTCGGTGAAGAAGTCAGTGAAGCAGCAGCAGCAGGAGGCGAGCAGCAGCTTGCAGTCGTCGGCGTCGATATCGGCGTCGTCGTGTTCGTCGACGGCGGGTGGTGGGGGGTCGTTCCGGGGGATGCAGCAGTTGAGCCTGAGGCGGCTGTCGGGGTGCTACGAGTGCCACATGGTGGTGGATCCCATCAGCGGCGTCTTCCGGGACAGCTCCTCCATGAGGGCCACCATCTGCTCCTGCCCCGACTGCGGCGAGATCTTCGTCAGGCCCGACTCCCTCCACCTCCACCAGTCCATCAGGCATGCAGTGTCGGAGCTGGGGGCGGAGGACACGAGCAGGAACATAATATCGATAATATTCCAGTCGAGCTGGCTGAAGAAGCAGAGCCCCGTGTGCGCCATCGACCGCATCCTCAAGGTCCACAACGCCGCCCGCACCCTCGCCCGCTTCGACGACTACCGCGCCGCCGTCAAGGCCAAAGCAATGGCCCACCGCCACCCTCGCTGCACCGCCGACGGCAACGAGCTCCTCCGCTTCCACTGCGCCACCCTCTCCTGCGACCTCGGCCTCCACGGCGCCACCCACCTCTGCGACCACCTCTCCTGCGCCGCCTGCGCCATCATCCGCCACGGCTTCAGGCCGCCCGCGCCGGGGGCCGGCATCCGCACCATGGCCACCAGCGGCCGCGCCCACGACGCCGTCGTCTCGTCCGGGTCGGAGGGCGACCGCCGGGCGATGCTGGTGTGCCGGGTGATCGCCGGCCGGGTGAGGAGGGAGGAGGCGGCGGCGGCGGCGGCGGAGGAAGAGGAGGAGGAGTACGACTCGGTGGCCGGGACGACGCCGGGGCTGTACTCCAACCTGGACGAGCTGGACGTCTTCAACCCCACAGCCATTCTCCCTTGCTTTGTCGTCGTCTACAGGGCCTGATCGATTAGTGATCATTAACCAATAATAATAATCTTAGCTAGCATCATTTCCTTCACTCTTCGTTAATTGCATGTAATCAATCGATCGATCGATGATGATGATGATCCCATTTATAATTAATTAATTCATCGTTAATGTCTGATTATTGTACTATCTGATCGATCGATCGGTATTGACTAGTGATCAGCGTATCAATCAATTTGTACAATCAGATAGATGTTT ] [+] EMBL AU078675 [ GTCGGAGGGCGACCGCCGGGCGATGCTGGTGTGCCGGGTGATCGCCGGCCGGGTGAGGAGGGAGGAGGCGGCGGCGGCGGCGGCGGAGGAAGAGGAGGAGGAGTACGACTCGGTGGCCGGGACGACGCCGGGGCTGTACTCCAACCTGGACGAGCTGGACGTCTTCAACCCCACAGCCATTCTCCCTTGCTTTGTCGTCGTCTACAGGGCCTGATCGATTAGTGATCATTAACCAATAATAATAATCTTAGCTAGCATCATTTCCTTCACTCTTCGTTAATTGCATGTAATCAATCGATCGATCGATGATGATGATGATCCCATTTATAATTAATTAATTCATCGTTAATGTCTGATTATTGTACTATCTGATCGATCGATCGGTATTGACTAGTGATCAGCGTATCAATCAATTTGTACAATCAGATAGATGTTTGTTAGTTTCTTCTACTGAAGGAGGAGTACATTATTGCATACTAGAGCTAA] consensusID : consensus_9479#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 345 fasta sequence [CNCCGGCCGGTTTAGGAGGGAGGAGGCGGCGGCGGCGGCGGCGGAGGAANAGGAGGAGGAGTACGACTCGGTGGCCGGGACGACGCCGGGGCTGTACTCCAACCTGGACGANCTGGACGTCTTCAACCCCACAGCCATTCNCCCTTGCTTTGTCGTCGTCTANAGGGCCTGATCGATTAGTGATCATTAACCAATAATAATAATCTTAGCTAGCATCATTTCCTTCACNCTTCGTTAATTGCATGTAATCAANCGATCGANCGATGATGATGATGATCCCATTTATAATTAATTAATTCATCGTTAATGTCTGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU076110 [CNCCGGCCGGTTTAGGAGGGAGGAGGCGGCGGCGGCGGCGGCGGAGGAANAGGAGGAGGAGTACGACTCGGTGGCCGGGACGACGCCGGGGCTGTACTCCAACCTGGACGANCTGGACGTCTTCAACCCCACAGCCATTCNCCCTTGCTTTGTCGTCGTCTANAGGGCCTGATCGATTAGTGATCATTAACCAATAATAATAATCTTAGCTAGCATCATTTCCTTCACNCTTCGTTAATTGCATGTAATCAANCGATCGANCGATGATGATGATGATCCCATTTATAATTAATTAATTCATCGTTAATGTCTGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9479#0 GCAAGCAACAGAGCCGAGCCGAGACCTCCTCTTTAGATAAGGAAGCAACAAGCTAAGAAG 60 consensus_9479#1 ------------------------------------------------------------ consensus_9479#0 CAGCATCATTCACTCCACGAGCTAGCAAAAAGGATAGCAATGGTGGAACCGGGGAGAGCG 120 consensus_9479#1 ------------------------------------------------------------ consensus_9479#0 CGGGAGACGAAGGTCACCGCCTCAGCCTCAAGCTCTGCAGGCTCAGACGCCGCTGTCATG 180 consensus_9479#1 ------------------------------------------------------------ consensus_9479#0 AAGAAGAAGAAGAAGAAGAAGAAGAAGCTGGTGGTAGCAAGCAGGAAGGTGGATGAGAAA 240 consensus_9479#1 ------------------------------------------------------------ consensus_9479#0 GACAAGAAGCAGGTGGATTACAAGTGCAGTAGAAGCAGCGGCAGAGACGAGTGCTGCAAG 300 consensus_9479#1 ------------------------------------------------------------ consensus_9479#0 GTGGAGAGCCGTCATCAGCAGTGCACAGAGCCGGAGAGCCCTTCCTACAGGTTAGCTCTC 360 consensus_9479#1 ------------------------------------------------------------ consensus_9479#0 AGGAGCCTCTTCTCGTGCAGAAACAGCAGCAGCAGCAGCCACGCCGGCCACCACCACCAC 420 consensus_9479#1 ------------------------------------------------------------ consensus_9479#0 CGCGCCGCCGACGGCAAGAAGCTCGGCTGCAATTCCGCCTCCATCTGCAAGGTCAAGCAA 480 consensus_9479#1 ------------------------------------------------------------ consensus_9479#0 GACAACCCGATGCAGCAGCACATGCGCAGGGCGGAGGATGAGCTCAAGGTGAAGGACAAG 540 consensus_9479#1 ------------------------------------------------------------ consensus_9479#0 CCGCCGGTCGCCGAGCCGTACTGCAAGCGCAGAGCTTCGGTGAGCGCGTGCAACATCAGC 600 consensus_9479#1 ------------------------------------------------------------ consensus_9479#0 AGCGAGCGGTCGGTGAAGAAGTCAGTGAAGCAGCAGCAGCAGGAGGCGAGCAGCAGCTTG 660 consensus_9479#1 ------------------------------------------------------------ consensus_9479#0 CAGTCGTCGGCGTCGATATCGGCGTCGTCGTGTTCGTCGACGGCGGGTGGTGGGGGGTCG 720 consensus_9479#1 ------------------------------------------------------------ consensus_9479#0 TTCCGGGGGATGCAGCAGTTGAGCCTGAGGCGGCTGTCGGGGTGCTACGAGTGCCACATG 780 consensus_9479#1 ------------------------------------------------------------ consensus_9479#0 GTGGTGGATCCCATCAGCGGCGTCTTCCGGGACAGCTCCTCCATGAGGGCCACCATCTGC 840 consensus_9479#1 ------------------------------------------------------------ consensus_9479#0 TCCTGCCCCGACTGCGGCGAGATCTTCGTCAGGCCCGACTCCCTCCACCTCCACCAGTCC 900 consensus_9479#1 ------------------------------------------------------------ consensus_9479#0 ATCAGGCATGCAGTGTCGGAGCTGGGGGCGGAGGACACGAGCAGGAACATAATATCGATA 960 consensus_9479#1 ------------------------------------------------------------ consensus_9479#0 ATATTCCAGTCGAGCTGGCTGAAGAAGCAGAGCCCCGTGTGCGCCATCGACCGCATCCTC 1020 consensus_9479#1 ------------------------------------------------------------ consensus_9479#0 AAGGTCCACAACGCCGCCCGCACCCTCGCCCGCTTCGACGACTACCGCGCCGCCGTCAAG 1080 consensus_9479#1 ------------------------------------------------------------ consensus_9479#0 GCCAAAGCAATGGCCCACCGCCACCCTCGCTGCACCGCCGACGGCAACGAGCTCCTCCGC 1140 consensus_9479#1 ------------------------------------------------------------ consensus_9479#0 TTCCACTGCGCCACCCTCTCCTGCGACCTCGGCCTCCACGGCGCCACCCACCTCTGCGAC 1200 consensus_9479#1 ------------------------------------------------------------ consensus_9479#0 CACCTCTCCTGCGCCGCCTGCGCCATCATCCGCCACGGCTTCAGGCCGCCCGCGCCGGGG 1260 consensus_9479#1 ------------------------------------------------------------ consensus_9479#0 GCCGGCATCCGCACCATGGCCACCAGCGGCCGCGCCCACGACGCCGTCGTCTCGTCCGGG 1320 consensus_9479#1 ------------------------------------------------------------ consensus_9479#0 TCGGAGGGCGACCGCCGGGCGATGCTGGTGTGCCGGGTGATCGCCGGCCGGGTGAGGAGG 1380 consensus_9479#1 -----------------------------------------CNCCGGCCGGTTTAGGAGG 19 * ******** * ****** consensus_9479#0 GAGGAGGCGGCGGCGGCGGCGGCGGAGGAAGAGGAGGAGGAGTACGACTCGGTGGCCGGG 1440 consensus_9479#1 GAGGAGGCGGCGGCGGCGGCGGCGGAGGAANAGGAGGAGGAGTACGACTCGGTGGCCGGG 79 ****************************** ***************************** consensus_9479#0 ACGACGCCGGGGCTGTACTCCAACCTGGACGAGCTGGACGTCTTCAACCCCACAGCCATT 1500 consensus_9479#1 ACGACGCCGGGGCTGTACTCCAACCTGGACGANCTGGACGTCTTCAACCCCACAGCCATT 139 ******************************** *************************** consensus_9479#0 CTCCCTTGCTTTGTCGTCGTCTACAGGGCCTGATCGATTAGTGATCATTAACCAATAATA 1560 consensus_9479#1 CNCCCTTGCTTTGTCGTCGTCTANAGGGCCTGATCGATTAGTGATCATTAACCAATAATA 199 * ********************* ************************************ consensus_9479#0 ATAATCTTAGCTAGCATCATTTCCTTCACTCTTCGTTAATTGCATGTAATCAATCGATCG 1620 consensus_9479#1 ATAATCTTAGCTAGCATCATTTCCTTCACNCTTCGTTAATTGCATGTAATCAANCGATCG 259 ***************************** *********************** ****** consensus_9479#0 ATCGATGATGATGATGATCCCATTTATAATTAATTAATTCATCGTTAATGTCTGATTATT 1680 consensus_9479#1 ANCGATGATGATGATGATCCCATTTATAATTAATTAATTCATCGTTAATGTCTGATTAAA 319 * ******************************************************** consensus_9479#0 GTACTATCTGATCGATCGATCGGTATTGACTAGTGATCAGCGTATCAATCAATTTGTACA 1740 consensus_9479#1 AAAAAAAAAAAAAAAAAAAAAAAAAA---------------------------------- 345 * * * * * * consensus_9479#0 ATCAGATAGATGTTTGTTAGTTTCTTCTACTGAAGGAGGAGTACATTATTGCATACTAGA 1800 consensus_9479#1 ------------------------------------------------------------ consensus_9479#0 GCTAA 1805 consensus_9479#1 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||