cluster # 9484

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Oryza sativa
cluster # 9484 cluster # 9484 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9484#0 length = 768 sequences # 5

consensus_9484#1 length = 423 sequences # 1

consensusID : consensus_9484#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 768
fasta sequence

                              [CCCATAGCTATCTCTAGCTAGCTTGCACATTCTTCATTCTTCTTGCAATCAGAGCTAGAGAAAAAGAGTTTGAGAGAGATCTAAGAGATGTCAGGGGTTTGGGTGTTCAAGAACGGGGTGGTGAGATTGGTGGAGAAGCAGCAGGCGACGGCGGGGACGGCGGTGGCGGGAGGGAGGAGGAAGGCGCTGGTGCACACGCCGAGCGGGCAGGTGGTGTCGT-CGTACGCGGCGCTGGAGGCGC-GGCTGACGGCGCTCGGGTGGGAG-CGCTACTACGAGGACCCCTCCCTCTTCCAGTTCCACAAGCGTGGCTCCCTCGACCTCATCTCCCTCCCCGCCGACTTCTCCGCCTTCTCCTCCGTCCACATGTACGACATCGTCGTCAAGAACCGCGACTCC-TT-CCGCGTCGTCGACGCCTAAATTGACCTATGTATAGGCTCGCATGCATGCAAGGTAGACGACCATCCACCTTGCATGCATGCAGGCTATCATTCTCTCTTCGTCTCCGTCTTCGTCTTTCATCTTTGTTGTGGTGTGTGTGAATTTATTATACTTCTTATGACTGTGTGTGTGACTGTGTGAGAGTTCATGGAGAGTGATGAGTAGTGGTATACATATGTGTCGTCGCTGATCGATTTGGTTTATTACCTTGTGGGTGGGTATTAATTATCAGCAGTGTGTTATATCAATTGCTTACTTGTATGTGTATCATGTACATGAGTGAGTGTGGCTGATGCATATATATAGAGGTCTTTAATAATTATGTACTAT]

[+] EMBL AK070626             [CCCATAGCTATCTCTAGCTAGCTTGCACATTCTTCATTCTTCTTGCAATCAGAGCTAGAGAAAAAGAGTTTGAGAGAGATCTAAGAGATGTCAGGGGTTTGGGTGTTCAAGAACGGGGTGGTGAGATTGGTGGAGAAGCAGCAGGCGACGGCGGGGACGGCGGTGGCGGGAGGGAGGAGGAAGGCGCTGGTGCACACGCCGTGCGGGCAGGTGGTGTCGT CGTACGCGGCGCTGGAGGCGC GGCTGACGGCGCTCGGGTGGGAG CGCTACTACGAGGACCCCTCCCTCTTCCAGTTCCACAAGCGTGGCTCCCTCGACCTCATCTCCCTCCCCGCCGACTTCTCCGCCTTCTCCTCCGTCCACATGTACGACATCGTCGTCAAGAACCGCGACTCC TT CCGCGTCGTCGACGCCTAAATTGACCTATGTATAGGCTCGCATGCATGCAAGGTAGACGACCAT CACCTTGCATGCATGCAGGCTATCATTCTCTCTTCGTCTCCGTCTTCGTCTTTCATCTTTGTTGTGGTGTGTGTGAATTTATTATACTTCTTATGACTGTGTGTGTGACTGTGTGAGAGTTCATGGAGAGTGATGAGTAGTGGTATACATATGTGTCGTCGCTGATCGATTTGGTTTATTACCTTGTGGGTGGGTATTAATTATCAGCAGTGTGATATATCAATTGCTTACTTGTATGTGTATCATGTACATGAGTGAGTGTGGCTGATGCATATATATAGAGGTCTTTAATAATTATGTACTAT]
[+] EMBL CA764839             [                                                                                                                                                                    GGCGGGAGGGAGGAGGAAGGCGCTGGTGCACACGCCGAGCGGGCAGGTGGTGTCGT CGTACGCGGCGCTGGAGGCGC GGCTGACGGCGCTCGGGTGGGAG CGCTACTACGAGGACCCCTCCCTCTTCCAGTTCCACAAGCGTGGCTCCCTCGACCTCATCTCCCTCCCCGCCGACTTCTCCGCCTTCTCCTCCGTCCACATGTACGACATCGTCGTCAAGAACCGCGACTCC TT CCGCGTCGTCGACGCCTAAATTGACCTATGTATAGGCTCGCATGCATGCAAGGTAGACGACCATCCACCTTGCATGCATGCAGGCTATCATTCTCTCTTCGTCTCCGTCTTCGTCTTTCATCTTTGTTGTGGTGTGTGTGAATTTATTATACTTCTTATGACTGTGTGTGTGACTGTGTGAGAGTTCACGGAGAGTGATGAGTAGTGGTATACATATGTGTCGTCGCTGATCGATTTGGTTTATTACCTTGTGGGTGGGTATTAATTATCAGCAGTGTGTTATATCAATTGCTTACTTGTATGTGTATCATGTACATGAGTGAGTGTGGCTGATGCATATATATAGAGGTCTTTAATAAT          ]
[+] EMBL AU071162             [                                                                                                                                                                                                  cgCGCCGAGCGGGCAGGTGGTGTCGT CGTACGCGGCGCTGGAGGCGCGGGCTGACGGCGCTCGGGTGGGAGCCGCTACTACGAGGACCCCTCCCTCTTCCAGTTCCACAAGCGTGGCTCCCTCGACCTCATCTCCCTCCCCGCCGACTTCTCCGCCTTCTCCTCCGTCCACATGTACGACATCGTCGTCAAGAACCGCGACTCCTTT CCGCGTCGTCGACGCCTAAATTGACCTATGTATAGGCTCGCATGCATGCAAGGTAGACGACCATCCACCTTGCATGCATGCAGGCTATCATTCTCTCTTCGTCTCCGTCTTCGTCTTTCATCTTTGTTGTGGTGTGTGTGAATTTATTATACTTCTTATGATTGTGTGTGTGACTGTGTGAGAGTTCATGGAGAGTGATGAGTAGTGGTATACATATGTGTCGTCGCTGATCGATTTGGTTTATTACCTTGTGGGTGGGTATTAATTATCAGCAGTGTGTTATATCAATTGCTTACTTGTATGTGTATCATGTACATGAGTGAGTGTGGCTGATGCATATATATAGAGGTaaaaaa              ]
[+] EMBL AU071184             [                                                                                                                                                                                                             GGCAGGTGGTGTCGTCCGTACGCGGCGCTGGAGGCGC GGCTGACGGCGCTCGGGTGGGAG CGCTACTACGAGGACCCCTCCCTCTTCCAGTTCCACAAGCGTGGCTCCCTCGACCTCATCTCCCTCCCCGCCGACTTCTCCGCCTTCTCCTCCGTCCACATGTACGACATCGTCGTCAAGAACCGCGACTCC TTNCCGCGTCGTCGACGCCTAAATTGACCTATGTATAGGCTCGCATGCATGCAAGGTAGACGACCATCCACCTTGCATGCATGCAGGCTATCATTCTCTCTTCGTCTCCGTCTTCGTCTTTCATCTTTGTTGTGGTGTGTGTGAATTTATTATACTTCTTATGATTGTGTGTGTGACTGTGTGAGAGTTCATGGAGAGTGATGAGTAGTGGTATACATATGTGTCGTCGCTGATCGATTTGGTTTATTACCTTGTGGGTGGGTATTAATTATCAGCAGTGTGTTATATCAATTGCTTACTTGTATGTGTATCATGTACATGAGTGAGTGTGGCTGATGCATATATATAGAGGTaaaaaa              ]
[+] EMBL AU070762             [                                                                                                                                                                                                                                                                                                                                                                                                        CGACTCC TT CCGCGTCGTCGAC CCTAAATTGACCTATGTATAGGCTCGCATGCATGCAAGGTAGACGACCATCCACCTTGCATGCATGCAGGCTATCATTCTCTCTTCGTCTCCGTCTTCGTCTTTCATCTTTGTTGTGGTGTGTGTGAATTTATTATACTTCTTATGACTGTGTGTGTGACTGTGTGAGAGTTCATGGAGAGTGATGAGTAGTGGTATACATATGTGTCGTCGCTGATCGATTTGGTTTATTACCTTGTGGGTGGGTATTAATTATCAGCAGTGTGTTATATCAATTGCTTACTTGTATGTGTATCATGTACATGAGTGAGTGTGGCTGATGCATATATATAGAGGTCTTTAATAAaaaaaaaa   ]




>consensus_9484#0
CCCATAGCTATCTCTAGCTAGCTTGCACATTCTTCATTCTTCTTGCAATCAGAGCTAGAG
AAAAAGAGTTTGAGAGAGATCTAAGAGATGTCAGGGGTTTGGGTGTTCAAGAACGGGGTG
GTGAGATTGGTGGAGAAGCAGCAGGCGACGGCGGGGACGGCGGTGGCGGGAGGGAGGAGG
AAGGCGCTGGTGCACACGCCGAGCGGGCAGGTGGTGTCGTCGTACGCGGCGCTGGAGGCG
CGGCTGACGGCGCTCGGGTGGGAGCGCTACTACGAGGACCCCTCCCTCTTCCAGTTCCAC
AAGCGTGGCTCCCTCGACCTCATCTCCCTCCCCGCCGACTTCTCCGCCTTCTCCTCCGTC
CACATGTACGACATCGTCGTCAAGAACCGCGACTCCTTCCGCGTCGTCGACGCCTAAATT
GACCTATGTATAGGCTCGCATGCATGCAAGGTAGACGACCATCCACCTTGCATGCATGCA
GGCTATCATTCTCTCTTCGTCTCCGTCTTCGTCTTTCATCTTTGTTGTGGTGTGTGTGAA
TTTATTATACTTCTTATGACTGTGTGTGTGACTGTGTGAGAGTTCATGGAGAGTGATGAG
TAGTGGTATACATATGTGTCGTCGCTGATCGATTTGGTTTATTACCTTGTGGGTGGGTAT
TAATTATCAGCAGTGTGTTATATCAATTGCTTACTTGTATGTGTATCATGTACATGAGTG
AGTGTGGCTGATGCATATATATAGAGGTCTTTAATAATTATGTACTAT

consensusID : consensus_9484#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 423
fasta sequence

                              [GATCGAGGAATTCAGTTAAGCAAAAATATTTATACATGTCGGGCGTGTGGGTGTTCCGGAACGGGGTGGTGAAGCTGGTGGAGAACCCGCCGGCGTCGGCGAACAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGGCGGCGGCGGCATCCGGCGCAAGGCGCTGCTGCACATGCCGACGGGTGAGGTGGTCACCTCCTACGCCTCCCTGGAGCGCAAGCTCGCCGCGCTCGGCTGGGAGCGCTACTACTCCGGCGGCGGCGGCGCCGCCGCCGCCGCCGCCATGATGCTCCAGTTCCACAAGCGCTCGTCGGTGGACCTGATCTCGCTGCCCAAGGACTTCTCCCAGTTCGGCTCCGTCCACATGTACGACATCGTCGTCAAGAACCGCGACGCCTTCCGAGTCATCGACGTCTAATCAC]

[+] EMBL AY304538             [GATCGAGGAATTCAGTTAAGCAAAAATATTTATACATGTCGGGCGTGTGGGTGTTCCGGAACGGGGTGGTGAAGCTGGTGGAGAACCCGCCGGCGTCGGCGAACAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGGCGGCGGCGGCATCCGGCGCAAGGCGCTGCTGCACATGCCGACGGGTGAGGTGGTCACCTCCTACGCCTCCCTGGAGCGCAAGCTCGCCGCGCTCGGCTGGGAGCGCTACTACTCCGGCGGCGGCGGCGCCGCCGCCGCCGCCGCCATGATGCTCCAGTTCCACAAGCGCTCGTCGGTGGACCTGATCTCGCTGCCCAAGGACTTCTCCCAGTTCGGCTCCGTCCACATGTACGACATCGTCGTCAAGAACCGCGACGCCTTCCGAGTCATCGACGTCTAATCAC]




>consensus_9484#1
GATCGAGGAATTCAGTTAAGCAAAAATATTTATACATGTCGGGCGTGTGGGTGTTCCGGA
ACGGGGTGGTGAAGCTGGTGGAGAACCCGCCGGCGTCGGCGAACAGCGGCGGCGGCGGCG
GCGGCGGCGGCGGCGGTGGCGGCGGCGGCATCCGGCGCAAGGCGCTGCTGCACATGCCGA
CGGGTGAGGTGGTCACCTCCTACGCCTCCCTGGAGCGCAAGCTCGCCGCGCTCGGCTGGG
AGCGCTACTACTCCGGCGGCGGCGGCGCCGCCGCCGCCGCCGCCATGATGCTCCAGTTCC
ACAAGCGCTCGTCGGTGGACCTGATCTCGCTGCCCAAGGACTTCTCCCAGTTCGGCTCCG
TCCACATGTACGACATCGTCGTCAAGAACCGCGACGCCTTCCGAGTCATCGACGTCTAAT
CAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9484#0      CCCATAGCTATCTCTAGCTAGCTTGCACATTCTTCATTCTTCTTGCAATCAGAGCTAGAG 60
consensus_9484#1      -----------------------------------------------------GATCGAG 7
                                                                           * * ***

consensus_9484#0      AAAAAGAGTTTGAGAGAGAT-CTAAGAGATGTCAGGGGTTTGGGTGTTCAAGAACGGGGT 119
consensus_9484#1      GAATTCAGTTAAGCAAAAATATTTATACATGTCGGGCGTGTGGGTGTTCCGGAACGGGGT 67
                       **   ****    * * **  * * * ***** ** ** *********  *********

consensus_9484#0      GGTGAGATTGGTGGAGAA-----------------GCAGCAG--------GCGACGGCGG 154
consensus_9484#1      GGTGAAGCTGGTGGAGAACCCGCCGGCGTCGGCGAACAGCGGCGGCGGCGGCGGCGGCGG 127
                      *****   **********                  **** *        *** ******

consensus_9484#0      GGACGGCGGTGGCGGGAGGGA-----GGAGGAAGGCGCTGGTGCACACGCCGAGCGGGCA 209
consensus_9484#1      CGGCGGCGGTGGCGGCGGCGGCATCCGGCGCAAGGCGCTGCTGCACATGCCGACGGGTGA 187
                       * ************  * *      ** * ********* ****** *****  **  *

consensus_9484#0      GGTGGTGTCGTCGTACGCGGCGCTGGAGGCGCGGCTGACGGCGCTCGGGTGGGAGCGCTA 269
consensus_9484#1      GGTGGTCACCTCCTACGCCTCCCTGGAGCGCAAGCTCGCCGCGCTCGGCTGGGAGCGCTA 247
                      ******  * ** *****  * ******     ***  * ******** ***********

consensus_9484#0      CTAC---------GAGGACCCCTCCCTC---------------TTCCAGTTCCACAAGCG 305
consensus_9484#1      CTACTCCGGCGGCGGCGGCGCCGCCGCCGCCGCCGCCATGATGCTCCAGTTCCACAAGCG 307
                      ****         *  * * ** **  *                ****************

consensus_9484#0      TGGCTCCCTCGACCTCATCTCCCTCCCCGCCGACTTCTCCGCCTTCTCCTCCGTCCACAT 365
consensus_9484#1      CTCGTCGGTGGACCTGATCTCGCTGCCCAAGGACTTCTCCCAGTTCGGCTCCGTCCACAT 367
                          **  * ***** ***** ** ***   *********   ***  ************

consensus_9484#0      GTACGACATCGTCGTCAAGAACCGCGACTCCTTCCGCGTCGTCGACGCCTAAATTGACCT 425
consensus_9484#1      GTACGACATCGTCGTCAAGAACCGCGACGCCTTCCGAGTCATCGACGTCTAA--TCAC-- 423
                      **************************** ******* *** ****** ****  * **  

consensus_9484#0      ATGTATAGGCTCGCATGCATGCAAGGTAGACGACCATCCACCTTGCATGCATGCAGGCTA 485
consensus_9484#1      ------------------------------------------------------------
                                                                                  

consensus_9484#0      TCATTCTCTCTTCGTCTCCGTCTTCGTCTTTCATCTTTGTTGTGGTGTGTGTGAATTTAT 545
consensus_9484#1      ------------------------------------------------------------
                                                                                  

consensus_9484#0      TATACTTCTTATGACTGTGTGTGTGACTGTGTGAGAGTTCATGGAGAGTGATGAGTAGTG 605
consensus_9484#1      ------------------------------------------------------------
                                                                                  

consensus_9484#0      GTATACATATGTGTCGTCGCTGATCGATTTGGTTTATTACCTTGTGGGTGGGTATTAATT 665
consensus_9484#1      ------------------------------------------------------------
                                                                                  

consensus_9484#0      ATCAGCAGTGTGTTATATCAATTGCTTACTTGTATGTGTATCATGTACATGAGTGAGTGT 725
consensus_9484#1      ------------------------------------------------------------
                                                                                  

consensus_9484#0      GGCTGATGCATATATATAGAGGTCTTTAATAATTATGTACTAT 768
consensus_9484#1      -------------------------------------------