cluster # 9486

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 9486 cluster # 9486 Sequences # 6 consensus # 1
see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9486#0 length = 1565 sequences # 6
consensusID : consensus_9486#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1565
fasta sequence
                              [TAAATTTCTCTCTCTCTCTCTCCTAACAAAAATGTTTGGTGCCAAAAAAAATTAAATCAAATTCAAGTTGCGTATAAAGACCACATGGTCGATGTCTTAACGAGACGCCTTGTAATATCGTCACACTCTCGAGCTTAGCTTCCTCCTACCTTCCTCCATCCTCTTCGTCTTCCTCCTCCTCTCGATCGATCGCCTCGCGAAGTCGCGAGCTAGCCAAGAATCTCATCTCCACTACATAAGCGAGAAGCTGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAGAGGTTAGCTAGCTAGAGATGGAGGTGATGGTGCCAGTGATGGCGCCGAGCGCGCCGTGCAGCCCAAGAACGGCGGCGGAGCACCACCACCTGCCGAGCTACTGCTACTTCTTCTCGAGCGCGCCGACGAGCCCGACGAGGGCGAGCTACTCCGGCGAGGCGGCGGCGGCGGCGGTGGGGGTGGGTGAGGGGGATGGGGCGTTCGATTTCGCGTTCGGGTTCAGTGGCCAGCTGCGGGAGTCGACGCCGATCCTCGCAGCCGCCGACGAGCTCTTCGAGGGCGGCAGGATCCGGCCGCTGAACACGCCGCACCCGAGCATTCTGCAGCTGGTGGATGATAGCGCGTACGCCTCGCCTCGGTCGCCGGGGAGGAGGCGGAGGATCGCCGCCGCGGAGGCGGCGGAG-GTGTCGTCGTCGTCGTCGTCGCAGAGAGGGAGGTCGGGCCGTGCTGCGCCTGCGTCGTCGTCGTCGAGCGCCTCGTCTCGTAGCCGGCGAGCCACGCGGTCTCTCTCACCGTTCAGGGGAGGAGGAGGCGGCGGCGCCGACGACGAGTACCCGTCCTCGCCGCCGTCGCCG-A-GGACC-TCCATGATGCGC-GGCTGCGGCAGC-GGCAG-CCGG-AAGTGGA-GGCTCAA-GGACTTGTTCC-TCTT-CCGGAGCGCGTCGGAGGGGCGCGCCACCGGTGCCGGCAGCAAGGACCCGCTCCTCAAGTACACCATGCTCTCCTCC-TCCGCCTCGTCGGCGGCCGCGGCGCTGCACCACAACCCGCAGAAGCTTCGCGGCGGCGGCGACGGCAGCGCGTCCATGCGCAAGGGCCGCGGGTCGACGGCGTCGGCCAGCGACATGCCGTACACGGTCGGCCGCGCCGCCGCCGAGGACATGCGGCGGCGCACCACGACGCCGCTGCCGTTCCACCGGAACAGCCTCTTCGGCTACCTCCGCTCCAACCCGGCCATCCACAGCATCAGCCGCAAGCTCAGCGGCTCCGGCTCCAATCGCGGCAAGACCGCCGCTTGAGCGACACGCGCCATGGCCGCCGCCGGCGAGTCGCGCGCCATACATGCACGATGCTCTCGAACCCAACCTTGCAGAGAGATGGTCAGAAAATTTGCCAAAATTCGTCCCCTTTTTTGTTTGAATTTTCAATGTATTCTTTCGTTTCCTGTGAAACCACAAGGTTTTTCATATACTAGTGTAGATATGTACGTAGTACATGGGATTCGCAAGAAATTTGGAAGTCCAAAGTATAATACGGCTCTCTTCAGTTCATCCTAC]

[+] EMBL AK072031             [TAAATTTCTCTCTCTCTCTCTCCTAACAAAAATGTTTGGTGCCAAAAAAAATTAAATCAAATTCAAGTTGCGTATAAAGACCACATGGTCGATGTCTTAACGAGACGCCTTGTAATATCGTCACACTCTCGAGCTTAGCTTCCTCCTACCTTCCTCCATCCTCTTCGTCTTCCTCCTCCTCTCGATCGATCGCCTCGCGAAGTCGCGAGCTAGCCAAGAATCTCATCTCCACTACATAAGCGAGAAGCTGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAGAGGTTAGCTAGCTAGAGATGGAGGTGATGGTGCCAGTGATGGCGCCGAGCGCGCCGTGCAGCCCAAGAACGGCGGCGGAGCACCACCACCTGCCGAGCTACTGCTACTTCTTCTCGAGCGCGCCGACGAGCCCGACGAGGGCGAGCTACTCCGGCGAGGCGGCGGCGGCGGCGGTGGGGGTGGGTGAGGGGGATGGGGCGTTCGATTTCGCGTTCGGGTTCAGTGGCCAGCTGCGGGAGTCGACGCCGATCCTCGCAGCCGCCGACGAGCTCTTCGAGGGCGGCAGGATCCGGCCGCTGAACACGCCGCACCCGAGCATTCTGCAGCTGGTGGATGATAGCGCGTACGCCTCGCCTCGGTCGCCGGGGAGGAGGCGGAGGATCGCCGCCGCGGAGGCGGCGGAG GTGTCGTCGTCGTCGTCGTCGCAGAGAGGGAGGTCGGGCCGTGCTGCGCCTGCGTCGTCGTCGTCGAGCGCCTCGTCTCGTAGCCGGCGAGCCACGCGGTCTCTCTCACCGTTCAGGGGAGGAGGAGGCGGCGGCGCCGACGACGAGTACCCGTCCTCGCCGCCGTCGCCG A GGACC TCCATGATGCGC GGCTGCGGCAGC GGCAG CCGG AAGTGGA GGCTCAA GGACTTGTTCC TCTT CCGGAGCGCGTCGGAGGGGCGCGCCACCGGTGCCGGCAGCAAGGACCCGCTCCTCAAGTACACCATGCTCTCCTCC TCCGCCTCGTCGGCGGCCGCGGCGCTGCACCACAACCCGCAGAAGCTTCGCGGCGGCGGCGACGGCAGCGCGTCCATGCGCAAGGGCCGCGGGTCGACGGCGTCGGCCAGCGACATGCCGTACACGGTCGGCCGCGCCGCCGCCGAGGACATGCGGCGGCGCACCACGACGCCGCTGCCGTTCCACCGGAACAGCCTCTTCGGCTACCTCCGCTCCAACCCGGCCATCCACAGCATCAGCCGCAAGCTCAGCGGCTCCGGCTCCAATCGCGGCAAGACCGCCGCTTGAGCGACACGCGCCATGGCCGCCGCCGGCGAGTCGCGCGCCATACATGCACGATGCTCTCGAACCCAACCTTGCAGAGAGATGGTCAGAAAATTTGCCAAAATTCGTCCCCTTTTTTGTTTGAATTTTCAATGTATTCTTTCGTTTCCTGTGAAACCACAAGGTTTTTCATATACTAGTGTAGATATGTACGTAGTACATGGGATTCGCAAGAAATTTGGA                                       ]
[+] EMBL AK107576             [                                                                                                                     TCGTCACCCTCTCGAGCTTAGCTTCCTCCTACCTTCCTCCATCCTCTTCGTCTTCCTCCTCCTCTCGATCGATCGCCTCGCGAAGTCGCGAGCTAGCCAAGAATCTCATCTCCACTACATAAGCGAGAAGCTGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAGAGGTTAGCTAGCTAGAGATGGAGGTGATGGTGCCAGTGATGGCGCCGAGCGCGCCGTGCAGCCCAAGAACGGCGGCGGAGCACCACCACCTGCCGAGCTACTGCTACTTCTTCTCGAGCGCGCCGACGAGCCCGACGAGGGCGAGCTACTCCGGCGAGGCGGCGGCGGCGGCGGTGGGGGTGGGTGAGGGGGATGGGGCGTTCGATTTCGCGTTCGGGTTCAGTGGCCAGCTGCGGGAGTCGACGCCGATCCTCGCAGCCGCCGACGAGCTCTTCGAGGGCGGCAGGATCCGGCCGCTGAACACGCCGCACCCGAGCATTCTGCAGCTGGTGGATGATAGCGCGTACGCCTCGCCTCGGTCGCCGGGGAGGAGGCGGAGGATCGCCGCCGCGGAGGCGGCGGAG GTGTCGTCGTCGTCGTCGTCGCAGAGAGGGAGGTCGGGCCGTGCTGCGCCTGCGTCGTCGTCGTCGAGCGCCTCGTCTCGTAGCCGGCGAGCCACGCGGTCTCTCTCACCGTTCAGGGGAGGAGGAGGCGGCGGCGCCGACGACGAGTACCCGTCCTCGCCGCCGTCGCCG A GGACC TCCATGATGCGC GGCTGCGGCAGC GGCAG CCGG AAGTGGA GGCTCAA GGACTTGTTCC TCTT CCGGAGCGCGTCGGAGGGGCGCGCCACCGGTGCCGGCAGCAAGGACCCGCTCCTCAAGTACACCATGCTCTCCTCC TCCGCCTCGTCGGCGGCCGCGGCGCTGCACCACAACCCGCAGAAGCTTCGCGGCGGCGGCGACGGCAGCGCGTCCATGCGCAAGGGCCGCGGGTCGACGGCGTCGGCCAGCGACATGCCGTACACGGTCGGCCGCGCCGCCGCCGAGGACATGCGGCGGCGCACCACGACGCCGCTGCCGTTCCACCGGAACAGCCTCTTCGGCTACCTCCGCTCCAACCCGGCCATCCACAGCATCAGCCGCAAGCTCAGCGGCTCCGGCTCCAATCGCGGCAAGACCGCCGCTTGAGCGACACGCGCCATGGCCGCCGCCGGCGAGTCGCGCGCCATACATGCACGATGCTCTCGAACCCAACCTTGCAGAGAGATGGTCAGAAAATTTGCCAAAATTCGTCCCCTTTTTTGTTTGAATTTTCAATGTATTCTTTCGTTTCCTGTGAAACCACAAGGTTTTTCATATACTAGTGTAGATATGTACGTAGTACATGGGATTCGCAAGAAATTTGGAAGTCCAAAGTATAATACGGCTCTCTTCAGTTCATCCTAC]
[+] EMBL AU070916             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TGCGGGAGTCGACGCCGATCCTCGCAGCCGCCGACGAGCTCTTCGAGGGCGGCAGGATCCGGCCGCTGAACACGCCGCACCCGAGCATTCTGCAGCTGGTGGATGATAGCGCGTACGCCTCGCCTCGGTCGCCGGGGAGGAGGCGGAGGATCGCCGCCGCGGAGGC GNGAAGNGTGTCGTCGTCGTCGTCGTCGCAGAGAGGGAGGTCGGGCCGTGCTGCGCCTGCGTCGTCGTCGTCGAGCGCCTCGTCTCGTAGCCGGCGAGCCACGCGGTCTCTCTCACCGTTCAGGGGAGGAGGAGGCGGCGGCGCCGACGACGAGTACCCGTCCTCGCCGCCGTCGCCGAA GGACCTTCCATGATGCGCGGGNTGCGGCAGCGGGCAGCCCGGAAAGTGGANGGCTCAAGGGACTTGTTCCTTCTTCCCGGAn                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AU070911             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TGCGGGAGTCGACGCCGATCCTCGCAGCCGCCGACGAGCTCTTCGAGGGCGGCAGGATCCGGCCGCTGAACACGCCGCACCCGAGCATTCTGCAGCTGGTGGATGATAGCGCGTACGCCTCGCCTCGGTCGCCGGGGAGGAGGCGGAGGATCGCCGCCGCGGAGGC GNGNAGNGTGTCGTCGTCGTCGTCGTCGCAGAGAGGGAGGTCGGGCCGTGCTGCGCCTGCGTCGTCGTCGTCGAGCGCCTCGTCTCGTAGCCGGCGAGCCACGCGGTCTCTCTCACCGTTCAGGGGAGGAGGANGCGGCGGCGCCGACGACGAGTACCCGTCCTCGCCGCCGTCNCCG AGGGACC TCCATGATGCGC GGCTGn                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU082120             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GTCGTCGTCGTCGCAGAGAGGGNGGTCGGGCCGT NTGCGCCTGCGTCGTCGTCGTCGAGCGCCTCGTCTCGTAGCCGGCGAGCCACGCGGTCTCTCTCACCGTTCAGGGGAGGAGGAGGCGGCGGCGCCGACGACGAGTACCCGTCCTCGCCGCCGTCGCCG A GGACC TCCATGATGCGC GGCTGCGGCAGC GGCAG CCGG AAGTGGA GGCTCAA GGACTTGTTCC TCTT CCGGAGCGCGTCGGNGGGGCGCGCCACCGGTGCCGGCAGCAAGGACCCGCTCCTCAAGTACACCATGCTCTCCTCCNTNC CCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU082121             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GTCGTCGTCGTCGCAGAGAGGGAGGTCGGGCCGTG TGCGCCTGCGTCGTCGTCGTCGAGCGCCTCGTCTCGTAGCCGGCGAGCCACGCGGTCTCTCTCACCGTTCAGGGGAGGAGGAGGCGGCGGCGCCGACGACGAGTACCCGTCCTCGCCGCCGTCGCCG A GGACC TCCATGATGCGC GGCTGCGGCAGC GGCAG CCGG AAGTGGA GGCTCAA GGACTTGTTCC TCTT CCGGAGCGCGTCGGAGGGGCGCGCCACCGGTGCCGGCAGCAAGGACCCGCTCCTCAAGTACACCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]




>consensus_9486#0
TAAATTTCTCTCTCTCTCTCTCCTAACAAAAATGTTTGGTGCCAAAAAAAATTAAATCAA
ATTCAAGTTGCGTATAAAGACCACATGGTCGATGTCTTAACGAGACGCCTTGTAATATCG
TCACACTCTCGAGCTTAGCTTCCTCCTACCTTCCTCCATCCTCTTCGTCTTCCTCCTCCT
CTCGATCGATCGCCTCGCGAAGTCGCGAGCTAGCCAAGAATCTCATCTCCACTACATAAG
CGAGAAGCTGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAG
AGGTTAGCTAGCTAGAGATGGAGGTGATGGTGCCAGTGATGGCGCCGAGCGCGCCGTGCA
GCCCAAGAACGGCGGCGGAGCACCACCACCTGCCGAGCTACTGCTACTTCTTCTCGAGCG
CGCCGACGAGCCCGACGAGGGCGAGCTACTCCGGCGAGGCGGCGGCGGCGGCGGTGGGGG
TGGGTGAGGGGGATGGGGCGTTCGATTTCGCGTTCGGGTTCAGTGGCCAGCTGCGGGAGT
CGACGCCGATCCTCGCAGCCGCCGACGAGCTCTTCGAGGGCGGCAGGATCCGGCCGCTGA
ACACGCCGCACCCGAGCATTCTGCAGCTGGTGGATGATAGCGCGTACGCCTCGCCTCGGT
CGCCGGGGAGGAGGCGGAGGATCGCCGCCGCGGAGGCGGCGGAGGTGTCGTCGTCGTCGT
CGTCGCAGAGAGGGAGGTCGGGCCGTGCTGCGCCTGCGTCGTCGTCGTCGAGCGCCTCGT
CTCGTAGCCGGCGAGCCACGCGGTCTCTCTCACCGTTCAGGGGAGGAGGAGGCGGCGGCG
CCGACGACGAGTACCCGTCCTCGCCGCCGTCGCCGAGGACCTCCATGATGCGCGGCTGCG
GCAGCGGCAGCCGGAAGTGGAGGCTCAAGGACTTGTTCCTCTTCCGGAGCGCGTCGGAGG
GGCGCGCCACCGGTGCCGGCAGCAAGGACCCGCTCCTCAAGTACACCATGCTCTCCTCCT
CCGCCTCGTCGGCGGCCGCGGCGCTGCACCACAACCCGCAGAAGCTTCGCGGCGGCGGCG
ACGGCAGCGCGTCCATGCGCAAGGGCCGCGGGTCGACGGCGTCGGCCAGCGACATGCCGT
ACACGGTCGGCCGCGCCGCCGCCGAGGACATGCGGCGGCGCACCACGACGCCGCTGCCGT
TCCACCGGAACAGCCTCTTCGGCTACCTCCGCTCCAACCCGGCCATCCACAGCATCAGCC
GCAAGCTCAGCGGCTCCGGCTCCAATCGCGGCAAGACCGCCGCTTGAGCGACACGCGCCA
TGGCCGCCGCCGGCGAGTCGCGCGCCATACATGCACGATGCTCTCGAACCCAACCTTGCA
GAGAGATGGTCAGAAAATTTGCCAAAATTCGTCCCCTTTTTTGTTTGAATTTTCAATGTA
TTCTTTCGTTTCCTGTGAAACCACAAGGTTTTTCATATACTAGTGTAGATATGTACGTAG
TACATGGGATTCGCAAGAAATTTGGAAGTCCAAAGTATAATACGGCTCTCTTCAGTTCAT
CCTAC
clustalw multiple alignements is not computed in this case