These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9494#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 854 fasta sequence [GGACTGCTCAAGTTGCTACAGTGGACCATATTAAACAGAAATGTACAAAATTGAGGCCAGCTGCTGATGAGGAGCTTCCTTCAGCATACATTGAAGATTTCAGGAGTGCCCTGGATGTTGAATTATCCAAATATGTTGGTGAAGCTTATCCAAAAGGGGTGTGTGCTGTTTATTGTACCAGCGGAAAAGATATAGAGGGACCAGGAGTTGATTTTCGTTTTGCAGCAGTTATTTCTGCTGCTAAACGCAGCCCACAAAACTTTTGCAACGGCAATTGGCGCTCAATTTGGACTCTGGAATTCATAGATGGA-TTACAGCTTGTCGAAATTAAA-GGGAAAATACAGGTAGGTGCTCATTATTTTG-AAGAGGGAAATG-TGCAGCTGGATACTAAC-ATCGA-TTGCAAGGATTCCACCATATTGCAGTCT-CCTGAGGAATGTGC-AGTATCAATAACTAACATCATTCGGCATCATGAGTCAGAATATTTGTCATCACTTGAGGAATCATACA-TGAATTTGTCTGATGCAACCTTCAAGGATCTTCGAAGGAAACTTCCCGTTACTCGTACTCTTTTCCCATGGCACAACACATTAGCCCTCAGCCTTACAAGAGACCTCACCAAAGAACTGGCTATAGGAAAATGAAGCTTGTGGAGGTCAGTTCATTAGATTAGCTTTGATATGGA-TTTTTTTTTATCTCCATGCTATGTGTTGTTCTGTAGATCCTGCAATTCATATCCTGTAGCCAGCAATTCTCTTGTTTTGATTTCTGGGCTTCCACATATCAGTGTAAATCAAGAACATGCACTTCTTGTGAGGAAGTTACATTTCAAGAATATATGATATC-TGAATGTTGAC] [+] EMBL AK108552 [GGACTGCTCAAGTTGCTACAGTGGACCATATTAAACAGAAATGTACAAAATTGAGGCCAGCTGCTGATGAGGAGCTTCCTTCAGCATACATTGAAGATTTCAGGAGTGCCCTGGATGTTGAATTATCCAAATATGTTGGTGAAGCTTATCCAAAAGGGGTGTGTGCTGTTTATTGTACCAGCGGAAAAGATATAGAGGGACCAGGAGTTGATTTTCGTTTTGCAGCAGTTATTTCTGCTGCTAAACGCAGCCCACAAAACTTTTGCAACGGCAATTGGCGCTCAATTTGGACTCTGGAATTCATAGATGGA TTACAGCTTGTCGAAATTAAA GGGAAAATACAGGTAGGTGCTCATTATTCTG AAGAGGGAAATG TGCAGCTGGATACTAAC ATCGA TTGCAAGGATTCCACCATATTGCAGTCT CCTGAGGAATGTGC AGTATCAATAACTAACATCATTCGGCATCATGAGTCAGAATATTTGTCATCACTTGAGGAATCATACA TGAATTTGTCTGATGCAACCTTCAAGGATCTTCGAAGGAAACTTCCCGTTACTCGTACTCTTTTCCCATGGCACAACACATTAGCCCTCAGCCTTACAAGAGACCTCACCAAAGAACTGGCTATAGGAAAATGAAGCTTGTGGAGGTCAGTTCATTAGATTAGCTTTGATATGGA TTTTTTTTTATCTCCATGCTATGTGTTGTTCTGTAGATCCTGCAATTCATATCCTGTAGCCAGCAATTCTCTTGTTTTGATTTCTGGGCTTCCACATATCAGTGTAAATCAAGAACATGCACTTCTTGTGAGGAAGTTACATTTCAAGAATATATGATATC TGAATGTTGAC] [+] EMBL CA765564 [ GTTTATTGTACCAGCGGAAAAGATATAGAGGGACCAGGAGCTGATTTTCGTTTTGCAGCAGTTATTTCTGCTGCTAAACGCAGCCCACAAAACTTTTGCAACGGCAATTGGCGCTCAATTTGGACTCTGGAATTCATAGATGGA TTACAGCTTGTCGAAATTAAA GGGAAAATACAGGTAGGTGCTCATTATTTTG AAGAGGGAAATG TGCAGCTGGATACTAAC ATCGA TTGCAAGGATTCCACCATATTGCAGTCT CCTGAGGAATGTGC AGTATCAATAACTAACATCATTCGGCATCATGAGTCAGAATATTTGTCATCACTTGAGGAATCATACA TGAATTTGTCTGATGCAACCTTCAAGGATCTTCGAAGGAAACTTCCCGTTACTCGTACTCTTTTCCCATGGCACAACACATTAGCCCTCAGCCTTACAAGAGACCTCACCAAAGAACTGGCTATAGGAAAATGAAGCTTGTGGAGGTCAGTTCATTAGATTAGCTTTGATATGGATTTTTTTTTTATCTCCA ] [+] EMBL BM037960 [ gaGGANTTNCAGCTTGTCGAAATTAAAGGGGAAAATACAGTTTAGTGCTCATTANTTTGAAAGAGGGAAATGNTCCAGCTGGATACTTACNTTCGATTTCCAAGGATTCCACCATATGCCAGTCTCCCTGAGGAATGTCCTAGTATCAATAACTAACATCATTCGGCATCATGAGTCAGAATATTTGTCATCACTTGAGGAATCATACACTGAATTTGTCTGATGCAACCTTCAAGGATCTTCGAAGGAAACTTCCCGTTACTCGTACTCTTTTCCCATGGCACAACACATTAGCCCTCAGCCTTACAAGAGACCTCACCAAAGAACTGGCTATAGGAAAATGAAGCTTGTGGAGGTCAGTTCATTAGATTAGCTTTGATATGGA TTTTTTTTTATCTCCATGCTATGTGTTGTTCTGTAGATCCTGCAATTCATATCCTGTAGCCAGCAATTCTCTTGTTTTGATTTCTGGGCTTCCACATATCAGTGTAAATCAAGAACATGCACTTCTTGTGAGGAAGTTACATTTCAAGAATATATGATATCNTGAAaaaaaaa] consensusID : consensus_9494#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 768 fasta sequence [TGCAATATTTTGAGAATTATGTGAAATGATGATTTAACGTGCTTGGATTTTTGTAAGCTCTAAAATTTTAAGTGAGGATAAACTATATAAGCATATAGGATATTATAAAAAGTGAAGGAGAGGTATATTGAAATATTATGTGGATTATGTGGGATGATAATTTAATTAACATGCTTGCATTTTAAAGTTCTAAAACTTAATAAATTAGCATGCTTGCATGAGATTTAAGATGTATTAAATGTTAGTGGATGATGTGGCATCTTTGCATGTTGAGCTTTAAGATGTAGTGGGCTTTAACTTTATAGAAATATAGGATTAATTCCTATAGAATGTCATGATGCAGGATGTCATTAATAATCCTCCAAGCTGTTCCCTTTTAACTTTTTTCCCTGTTACTTGAAACTTGACTAAGGATTCTCTTCGTATTAATGTGGATTGTGTCACTGACCATATGGTCGTATCTTTCTTTCAGCGCTTCGCTGGGACTTGGAATGTTTGTTGTTTTTCAGTGCTTTCATGGCCATGGAACTCAGAATGTCTCCAACGTGCAAATTCTTGGTTGTGATCTAGAAGATGGTTATTTGTTTGAAACAATGGAAGCACTTGATGTTCCCTTAGCATATACACTTGTGAGCTTGTGTTGATAGAATTGTAAAGCTTACATATGTTTTAGTTCTACTATTATTTTGAANAGGGAAATGTGCAGCTGGATGCTAACATCGGTTGCAAGGACTGAAGTGTACGTACCAATGAAAAAAAAAAAAAAAA] [+] EMBL AU075621 [TGCAATATTTTGAGAATTATGTGAAATGATGATTTAACGTGCTTGGATTTTTGTAAGCTCTAAAATTTTAAGTGAGGATAAACTATATAAGCATATAGGATATTATAAAAAGTGAAGGAGAGGTATATTGAAATATTATGTGGATTATGTGGGATGATAATTTAATTAACATGCTTGCATTTTAAAGTTCTAAAACTTAATAAATTAGCATGCTTGCATGAGATTTAAGATGTATTAAATGTTAGTGGATGATGTGGCATCTTTGCATGTTGAGCTTTAAGATGTAGTGGGCTTTAACTTTATAGAAATATAGGATTAATTCCTATAGAATGTCATGATGCAGGATGTCATTAATAATCCTCCAAGCTGTTCCCTTTTAACTTTTTTCCCTGTTACTTGAAACTTGACTAAGGATTCTCTTCGTATTAATGTGGATTGTGTCACTGACCATATGGTCGTATCTTTCTTTCAGCGCTTCGCTGGGACTTGGAA ] [+] EMBL AU075622 [ GTATTAAATGTTAGTGGATGATGTGGCATCTTTGCATGTTGAGCTTTAAGATGTAGTGGGCTTTAACTTTATAGAAATATAGGATTAATTCCTATAGAATGTCATGATGCAGGATGTCATTAATAATCCTCCAAGCTGTTCCCTTTTAACTTTTTTCCCTGTTACTTGAAACTTGACTAAGGATTCTCTTCGTATTAATGTGGATTGTGTCACTGACCATATGGTTGTATCTTTCTTTCAGCGCTTCGCTGGGACTTGGAATGTTTGTTGTTTTTCAGTGCTTTCATGGCCATGGAACTCAGAATGTCTCCAACGTGCAAATTCTTGGTTGTGATCTAGAAGATGGTTATTTGTTTGAAACAATGGAAGCACTTGATGTTCCCTTAGCATATACACTTGTGAGCTTGTGTTGATAGAATTGTAAAGCTTACATATGTTTTAGTTCTACTATTATTTTGAANAGGGAAATGTGCAGCTGGATGCTAACATCGGTTGCAAGGACTGAAGTGTACGTACCAATGAAAAAAAAAAAAAAAA] consensusID : consensus_9494#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTGGAAGCAATTACGGATATCTCACCATAAGTTTCTTAGTTGAATTGTCTCACCATATTTCTTGGGGAGCTCATATGATGATAACATTGGCATATATACTCTAAGGGTAATAGACTTGCCACTGAAAATCATAGGAATCTCTCTCATTGGTACGTACACTTCAGTCCTTGCAACCGATGTTAGCATCCAGCTGCACATTTCCCTCTTCAAAATAATAGTAGAACTAAAACATATGTAAGCTTTACAATTCTATCAACACAAGCTCACAAGGGTATATGCTAAGGGAACATCGAGGGCTTCCATTGTTTCAAACAAATAACTATGTTCTAGATCACAACCAAAAATTTGCACGTTGGAAACATTCTGAGTTCCATGGCCATGAAAGCACTGAAAAACAACAAACGTTCCAAGTCCCAGCGAAGCGCGCGGAATCGCTGGTGCAAACAATATCCATCTGGCTAGCGGAGCAAACGATTTGTTGTCGTCGCCGTCGTCGTTGCCTCCTCCTCCGCCACGCCTCCTAATTAAATCCCGGGACTGGTTGGCCGGTGTCTCCCCCCCTTG] [+] EMBL CA762175 [TTTTTTTTTTTTTTTTTTTTTTTTGGAAGCAATTACGGATATCTCACCATAAGTTTCTTAGTTGAATTGTCTCACCATATTTCTTGGGGAGCTCATATGATGATAACATTGGCATATATACTCTAAGGGTAATAGACTTGCCACTGAAAATCATAGGAATCTCTCTCATTGGTACGTACACTTCAGTCCTTGCAACCGATGTTAGCATCCAGCTGCACATTTCCCTCTTCAAAATAATAGTAGAACTAAAACATATGTAAGCTTTACAATTCTATCAACACAAGCTCACAAGGGTATATGCTAAGGGAACATCGAGGGCTTCCATTGTTTCAAACAAATAACTATGTTCTAGATCACAACCAAAAATTTGCACGTTGGAAACATTCTGAGTTCCATGGCCATGAAAGCACTGAAAAACAACAAACGTTCCAAGTCCCAGCGAAGCGCGCGGAATCGCTGGTGCAAACAATATCCATCTGGCTAGCGGAGCAAACGATTTGTTGTCGTCGCCGTCGTCGTTGCCTCCTCCTCCGCCACGCCTCCTAATTAAATCCCGGGACTGGTTGGCCGGTGTCTCCCCCCCTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9494#0 GGACTGCTCAAGTTGCTACAGTGGACCATATTAAACAGAAATGTACAAAATTGAGGCCAG 60 consensus_9494#1 -----------------------------------TGCAATATTTTGAGAATTATGTGAA 25 consensus_9494#2 ------------------------------------------------------------ consensus_9494#0 CTGCTGATGAGGAGCTTCCTTCAGCATACATTGAAGATTTCAGGAGTGCCCTGGATGTTG 120 consensus_9494#1 ATGATGATTT--AACGTGCTTGGATTT---TTGTAAGCTCTAAAATTTTAAGTGAGGATA 80 consensus_9494#2 -----------------------------------------------------TTTTTTT 7 * consensus_9494#0 AATTATCCAAATATGTTGGTGAAGCTTATCCAAAAGGGGT-GTGTGCTGTTTA-TTGTAC 178 consensus_9494#1 AACTATATAAGCATATAGGATA---TTAT--AAAAAGTGA-AGGAGAGGTATA-TTGAAA 133 consensus_9494#2 TTTTTTTTTTTTTTTTTGGAAGCAATTACGGATATCTCACCATAAGTTTCTTAGTTGAAT 67 * * * * ** *** * * * ** *** * consensus_9494#0 CAGCGGAAAAGATATAGAGGGACCAGGAGTTGATTTTCGT-TTTGCAGCAGTTATTTCTG 237 consensus_9494#1 TATTATGTGGATTAT-GTGGGATGATAATTTAATTAACATGCTTGCATTTTAAAGTTCTA 192 consensus_9494#2 TGTCTCACCATATTTCTTGGGGAGCTCATATGATGATAACATTGGCATATATA--CTCTA 125 * * *** * * ** * *** *** consensus_9494#0 CTGCTAAACGCAGCCCACAAAACTTTTGCAACGGCAATTGGCGCTCAATTTGGACTCTGG 297 consensus_9494#1 AAACTTAATAAATT----AGCATGCTTGCA-TGAGATTTAAGATGTA--TTAAATGTTAG 245 consensus_9494#2 AGGGT-------------AATAGACTTGCCACTGAAAATCATAGGAATCTCTCTCATTGG 172 * * * **** * * * * * * consensus_9494#0 AATTCATAGATGGATTACAGCTTGTCGAAATTAAAGGGAAAATACAGGTAGGTGCTCATT 357 consensus_9494#1 TGGATGATGTGGCATCTTTGCATGTTGAGCTTTAAG-----ATGTAG-TGGGCTTTAACT 299 consensus_9494#2 TACGTACACTTCAGTCCTTGCA-ACCGATGTTAGC------ATCCAGCTGCACATTTCCC 225 * ** ** ** ** ** * * consensus_9494#0 ATTTTGAAGAGGGAAATGTGCAGCTGGATACTAACATCGATTGCAAGGATTCCACCATAT 417 consensus_9494#1 TTATAGAAATATAGGATTAATTCCTATAGAATGTCATGA--TGCA-GGATGTCATTA--- 353 consensus_9494#2 TCTTCAAAATAATAGTAGAACTAAAACATA-TGTAAGCT-TTACA---ATTCTATCAA-- 278 * ** * * * * * ** ** * * consensus_9494#0 TGCAGTCTCCTGAGGA-ATGTGCAGTATCAATAACTAACATCATT--CGGCATCATGAGT 474 consensus_9494#1 -ATAATCCTCCAAG---CTGTTCCCTTTTAACTTTTTTCCCTGTTACTTGAAACTTGACT 409 consensus_9494#2 CACAAGCTCACAAGGGTATATGCTAAGGGAACATCGAGGGCTTCCA--------TTGTTT 330 * * ** * * * ** ** * consensus_9494#0 CAGAATATTTGTCATCACTTGAGGAATCATACATGAATTTGTCTGATGCAACCTTCAAGG 534 consensus_9494#1 AAGGATTCTCTTCGTATTAATGTGGATTGTGTCACTGACCATATGGTCGTATCTT----- 464 consensus_9494#2 CAAACAAATAACTATGTTCTAGATCACAAC-CAAAAATTTGCACGTTGGAAACAT----- 384 * * * * * * * * * consensus_9494#0 ATCTTCGAAGGAAACTTCCCGTTACTCGTACTCTTTTCCCATGGCACAACACATTAGCCC 594 consensus_9494#1 -TCTTTCAGCG--CTTCGCTGGGACTTGGAATGTTTGTT-GTTTTTCAGTGCTTTCATGG 520 consensus_9494#2 ---TCTGAG------TTCCATGGCCATGAAAGCACTGAAAAACAACAAACGTTCCAAGTC 435 * * * * * * * * * consensus_9494#0 TCAGCCTTACAAGAGACCTCACCAAAGAACTGGCTATAGGAAAATGAAGCTTGTGGAGGT 654 consensus_9494#1 CCA-TGGAACTCAGAATGTCTCCAACGTGCAAATTCTTGGTTGT--GATCTAGAAGATGG 577 consensus_9494#2 CCAGCGAAGCGCGCGGAATCGCTG--GTGCAAACAATATCCATCTGGCTAGCGGAGCAAA 493 ** * ** * * * * * * consensus_9494#0 CAGTTCATTAGATTAGCTTTGATATGGATTTTTTTTTATCTCCATGCTATGTGTTGTTCT 714 consensus_9494#1 TTATTTGTTTGA--AACAATG----GAAGCACTTGATGTTCCCTTAGCATATACACTTGT 631 consensus_9494#2 CGATTTGTTGTCGTCGCCGTC------GTCGTTGCCTCCTCCTCCGCCACGCCTCCTAAT 547 ** ** * * * * * * * * consensus_9494#0 GTAGATCCTGCAATTCATATCCTGTAGCCAGCAATTCTCTTGTTTTGATTTCTGGGCTTC 774 consensus_9494#1 G-AGCTTGTGTTGATAGAATTGTAAAGCTTACATATGTTTTAGTTCTACTATTAT-TTTG 689 consensus_9494#2 T-AAATCCCGGGACTGGTTGGCCGGTGTCTCCCCCCCTTG-------------------- 586 * * * * * * * consensus_9494#0 CACATATCAGTGTAAATCAAGA-ACATGCACTTCTTGTGAGGAAGTTACATTTCAAGAAT 833 consensus_9494#1 AANAGGGAAATGTGCAGCTGGATGCTAACATCGGTTGCAAGGA--CTGAAGTGTACGTAC 747 consensus_9494#2 ------------------------------------------------------------ consensus_9494#0 ATATGATATCTGAATGTTGAC 854 consensus_9494#1 CAATGAAAAAAAAAAAAAAAA 768 consensus_9494#2 --------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||