These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9499#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1754 fasta sequence [AGCCGGCGTCGTTGTTCAGCTTCGTGAGCGCGATGATAAAGCTGGCGATGAAGATCGCCACGGTGGCGAAGAAGGCTCGCCAGAACCAGACCAAGTGCCTGGAGCTCTCCGACCGCGCGCGGCGAGTCGCCGGCATCCTGAGCAACTACAACTACAAGCCCGCGGCTACCGGCGAGGCGGCGGCGGCGGCGACGTGGGACATGCTGGGCAGCCTCAACGAGGCCCTCGACGAGGCGCACAAGCTCGTCGAGTCCTGCTGCGGAGACGGCCAGATGTACAGGCTCGTGGGCAGCCGCGCGGTGGACGCCAAGCTGGACAGCGTCAATAACAAGATCAGCAACTGCCTCATGGACCTCCTCGCCGCCCAAGGCGCAGGCACGGCGAAGAAGA-TNGATGAGCTGCACCTTGTGG-TCGTGGATCG-CAATCACC-ACCGTGCAAGC-AATTCGAACGCCGGC--GTCCGCG-AGGATAA-GATGACCAGTCATCAGCACGCCGCTCCTGGTTATAGCCGCCCAAACAATTCAGCACGAATGAAGCAGAACACCGCCGGCATCATGTTCGGCAACCACACCGCTTCCGATCATGGCCGCCGCTTAAACAGTTCAGTAAGATCACTGAGAGTGATGAACCCGGCTCTCAGTCATCACCAGCTGGCAAACAATTCAGCGTGGTGGAAGCAGAGTGAGATCAACACCGGCAGCTCAAATTATTCGGTAAGATCGCTAGGAGAGAGCAGCTCTGCCAAGTCGTCCTCGGGAAGATCGTGGACAGAGATCAACTCTGCCAACTCTTCGATAGTAAGATCGCGGACAAAGATCAACTCTGCTCACTCTTCGATAGTAAGATCCCGGACAGAGATCAACTCTGCTCACTCTTCCATAGTAAGATCGCGGACAAAGATCAACTCTGCTCACTCTTCGATAGTAAGATCCCAGACAGAGATCAACTCTAACAGGTCCTCGATAAATTCGGTGAGAGAGATCAGCTCTGCCAAATCCATCCACAAAGAGAAGATCGACCCTCTCCTTGCTCACAGTCATCACCAGGCAAACAATTCAGTTAGGGTGAGCTACACCTGCAAGAACGGCAACAAGAGCGTGCAGCAGAACGGGGTAAACAGCAGCAATTCGATGAGAAGCGAGAAGGCTTCCACCGCGGCTACGGCTAGGCCGCCATTACAGGGCTCCTACTCCGACGCCGGCGTCGCGGGCTACCCGAACGGGCAAGGCTACGCTCTCTACCAATATTCCATTGAGGATGATCCAACCTCCTGCGCCGTAATGTGATGTGCAGAGCAGAGGAAGCCATGAATCTAAGCTCCGGCAGAGGACGCAGCCTGTGCTTGATCCATGACCCTGCATCTGCATGATTCCTCGAACCGATCGATGAGGCTTTATTTTTCTCTCGCGTATTTCGGGTGCCCGGAAATCCATGGATTATGTGATGGTTCTTACATTACGCATGTGCATTAATCGCGACATCACGCATCCATTTGGGTAGTAGCATCTCGGGATTGTAATGTTGCGTGTTTGGATGTCCGTGTAATTTTTTCGCCGGACGCATGTCTGGTGTTGTTAATGACTGTAGGCTCCTATAGTAGCAAATGACAACAAGTTTTTTTTACTAAAGTATGTACTATATGCCTATACGATTAATATCATTAAACTTTAATGCTACAGGACAGTATCCCGTTCGGATGATACTCGAAAATATAGGCGATACCTCATATGTATCATCCCATCCGTACTGTCGTGTAA] [+] EMBL AU076252 [AGCCGGCGTCGTTGTTCAGCTTCGTGAGCGCGATGATAAAGCTGGCGATGAAGATCGCCACGGTGGCGAAGAAGGCTCGCCAGAACCAGACCAAGTGCCTGGAGCTCTCCGACCGCGCGCGGCGAGTCGCCGGCATCCTGAGCAACTACAACTACAAGCCCGCGGCTACCGGCGAGGCGGCGGCGGCGGCGACGTGGGACATGCTGGGCAGCCTCAACGAGGCCCTCGACGAGGCGCACAAGCTCGTCGAGTCCTGCTGCGGAGACGGCCAGATGTACAGGCTCGTGGGCAGCCGCGCGGTGGACGCCAAGCTGGACAGCGTCAATAACAAGATCAGCAACTGCCTCATGGACCTCCTCGCCGCCCAAGGCGCAGGCACGGCGAAGAAGATTNGATGAGCTGCACCTTGTGGTTCGTGGATCGNCAATCACCAACCGTGCAAGCAAATTCGAACGCCGGCCGGTCCGCGAAGGATAANGATGAC ] [+] EMBL C26498 [AGCCGGCGTCGTTGTTCAGCTTCGTGAGCGCGATGATAAAGCTGGCGATGAAGATCG CACGGTGGCGAAGAAGGNTCGCCAGAACCAGACCAAGTGCCTGGAGCTCTCCGACCGCGCGCGGCGAGTNGCCGGCATCCTGAGCAACTACAACTACAAGCNCGCGGCTACCGGNNAGGCGGCGGCGGCGGCGACGTGGGACATGCTGGGCAGCCTCAACGAGGCCNTNGACGAGGCGCACAAGCTCGTCGAGTCCTACTNCGGAGACGGCCAGAT ] [+] EMBL AK107024 [ GCGTCGTTGTTCAGCTTCGTGAGCGCGATGATAAAGCTGGCGATGAAGATCGCCACGGTGGCGAAGAAGGCTCGCCAGAACCAGACCAAGTGCCTGGAGCTCTCCGACCGCGCGCGGCGAGTCGCC GCATCCTGAGCAACTACAACTACAAGCCCGCGGCTACCGGCGAGGCGGCGGCGGCGGCGACGTGGGACATGCTGGGCAGCCTCAACGAGGCCCTCGACGAGGCGCACAAGCTCGTCGAGTCCTGCTGCGGAGACGGCCAGATGTACAGGCTCGTGGGCAGCCGCGCGGTGGACGCCAAGCTGGACAGCGTCAATAACAAGATCAGCAACTGCCTCATGAACCTCCTCGCCGCCCAAGGCGCAGGCACGGCGAAGAAGA TCGATGAGCTGCACCTTGTGG TCGTGGATCG CAATCACC ACCGTGCAAGC AATTCGAACGCCGGC GTCCGCG AGGATAA GATGACCAGTCATCAGCACGCCGCTCCTGGTTATAGCCGCCCAAACAATTCAGCACGAATGAAGCAGAACACCGCCGGCATCATGTTCGGCAACCACACCGCTTCCGATCATGGCCGCCGCTTAAACAGTTCAGTAAGATCACTGAGAGTGATGAACCCGGCTCTCAGTCATCACCAGCTGGCAAACAATTCAGCGTGGTGGAAGCAGAGTGAGATCAACACCGGCAGCTCAAATTATTCGGTAAGATCGCTAGGAGAGAGCAGCTCTGCCAAGTCGTCCTCGGGAAGATCGTGGACAGAGATCAACTCTGCCAACTCTTCGATAGTAAGATCGCGGACAAAGATCAACTCTGCTCACTCTTCGATAGTAAGATCCCGGACAGAGATCAACTCTGCTCACTCTTCCATAGTAAGATCGCGGACAAAGATCAACTCTGCTCACTCTTCGATAGTAAGATCCCAGACAGAGATCAACTCTAACAGGTCCTCGATAAATTCGGTGAGAGAGATCAGCTCTGCCAAATCCATCCACAAAGAGAAGATCGACCCTCTCCTTGCTCACAGTCATCACCAGGCAAACAATTCAGTTAGGGTGAGCTACACCTGCAAGAACGGCAACAAGAGCGTGCAGCAGAACGGGGTAAACAGCAGCAATTCGATGAGAAGCGAGAAGGCTTCCACCGCGGCTACGGCTAGGCCGCCATTACAGGGCTCCTACTCCGACGCCGGCGTCGCGGGCTACCCGAACGGGCAAGGCTACGCTCTCTACCAATATTCCATTGAGGATGATCCAACCTCCTGCGCCGTAATGTGATGTGCAGAGCAGAGGAAGCCATGAATCTAAGCTCCGGCAGAGGACGCAGCCTGTGCTTGATCCATGACCCTGCATCTGCATGATTCCTCGAACCGATCGATGAGGCTTTATTTTTCTCTCGCGTATTTCGGGTGCCCGGAAATCCATGGATTATGTGATGGTTCTTACATTACGCATGTGCATTAATCGCGACATCACGCATCCATTTGGGTAGTAGCATCTCGGGATTGTAATGTTGCGTGTTTGGATGTCCGTGTAATTTTTTCGCCGGACGCATGTCTGGTGTTGTTAATGACTGTAGGCTCCTATAGTAGCAAATGACAACAAGTTTTTTTTACTAAAGTATGTACTATATGCCTATACGATTAATATCATTAAACTTTAATGCTACAGGACAGTATCCCGTTCGGATGATACTCGAAAATATAGGCGATACCTCATATGTATCATCCCATCCGTACTGTCGTGTAA] [+] EMBL CB001005 [ GCCGCCGCTTAAACAGTTCAGTAAGATCACTGAGAGTGATGAACCCGGCTCTCAGTCATCACCAGCTGGCAAACAATTCAGCGTGGTGGAAGCAGAGTGAGATCAACACCGGCAGCTCAAATTATTCGGTAAGATCGCTAGGAGAGAGCAGCTCTGCCAAGTCGTCCTCGGGAAGATCGTGGACAGAGATCAACTCTGCCAACTCTTCGATAGTAAGATCGCGGACAAAGATCAACTCTGCTCACTCTTCGATAGTAAGATCCCGGACAGAGATCAACTCTGCTCACTCTTCCATAGTAAGATCGCGGACAAAGATCAACTCTGCTCACTCTTCGATAGTAAGATCCCAGACAGAGATCAACTCTAACAGGTCCTCGATAAATTCGGTGAGAGAGATCAGCTCTGCCAAATCCATCCACAAAGAGAAGATCGACCCTCTCCTTGCTCACAGTCATCACCAGGCAAACAATTCAGTTAGGGTGAGCTACACCTGCAAGAACGGCAATAAGAGCGTGCAGCAGAACGGGGTAAACAGCAGCAATTCGATGAGAAGCGAGAAGGCTTCCACCGCGGCTACGGCTAGGGCGCCATTGCAGGGCTCCTACTCCGACGCCGG ] [+] EMBL AU166450 [ ACTCCGACGCCGGCGTCGCGGGCTACCCGAACGGGCAAGGCTACGCTCTCTACCAATATTCCATTGAGGATGATCCAACCTCCTGCGCCGTAATGTGATGTGCAGAGCAGAGGAAGCCATGAATNTAAGCTCCGGCAGAGGACGCAGCCTGTGCTTGATCCATGACCCTGCATCTGCATGATTCCTCGAACCGATCGATGAGGCTTTATTTTTCTCTCGCGTATTTCGGGTGCCCGGAAATCCATGGATTATGTGATGGTTCTTACATTACGCATGTGCATTAATCGCGACATCACGCATCCATTTGGGTAGTAGCATCTCGGGATTGTAATGTTGCGTGTTTGGATGTCCGTGTAATTTTTTCGCCGGACGCATGTCTGGTGTTGTTAATGACTGTAGGCTCCTATAGTAGCAAATGACAACAAGTTTTTTTTACTAAAaaaaa ] consensusID : consensus_9499#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 304 fasta sequence [ATGGACTGAAGGAGTAGAAAATTCCTCGAACCGATCGATGAGGCTTTATTTTTCTCTCGCGTATTTCGGGTGCCCGGAAATCCATGGATTATGTGATGGTTCTTACATTACGCATGTGCATTAATCGCGACATCACGCATCCATTTGGGTAGTAGCATCTCGGGATTGTAATGTTGCGTGTTTGGATGTCCGTGTAATTTTTTCGCCGGACGCATGTCTGGTGTTGTTAATGACTGTAGGCTCCTATAGTAGCAAATGACAACAAGTTTTTTTTACTAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF308093 [ATGGACTGAAGGAGTAGAAAATTCCTCGAACCGATCGATGAGGCTTTATTTTTCTCTCGCGTATTTCGGGTGCCCGGAAATCCATGGATTATGTGATGGTTCTTACATTACGCATGTGCATTAATCGCGACATCACGCATCCATTTGGGTAGTAGCATCTCGGGATTGTAATGTTGCGTGTTTGGATGTCCGTGTAATTTTTTCGCCGGACGCATGTCTGGTGTTGTTAATGACTGTAGGCTCCTATAGTAGCAAATGACAACAAGTTTTTTTTACTAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9499#0 AGCCGGCGTCGTTGTTCAGCTTCGTGAGCGCGATGATAAAGCTGGCGATGAAGATCGCCA 60 consensus_9499#1 ------------------------------------------------------------ consensus_9499#0 CGGTGGCGAAGAAGGCTCGCCAGAACCAGACCAAGTGCCTGGAGCTCTCCGACCGCGCGC 120 consensus_9499#1 ------------------------------------------------------------ consensus_9499#0 GGCGAGTCGCCGGCATCCTGAGCAACTACAACTACAAGCCCGCGGCTACCGGCGAGGCGG 180 consensus_9499#1 ------------------------------------------------------------ consensus_9499#0 CGGCGGCGGCGACGTGGGACATGCTGGGCAGCCTCAACGAGGCCCTCGACGAGGCGCACA 240 consensus_9499#1 ------------------------------------------------------------ consensus_9499#0 AGCTCGTCGAGTCCTGCTGCGGAGACGGCCAGATGTACAGGCTCGTGGGCAGCCGCGCGG 300 consensus_9499#1 ------------------------------------------------------------ consensus_9499#0 TGGACGCCAAGCTGGACAGCGTCAATAACAAGATCAGCAACTGCCTCATGGACCTCCTCG 360 consensus_9499#1 ------------------------------------------------------------ consensus_9499#0 CCGCCCAAGGCGCAGGCACGGCGAAGAAGATNGATGAGCTGCACCTTGTGGTCGTGGATC 420 consensus_9499#1 ------------------------------------------------------------ consensus_9499#0 GCAATCACCACCGTGCAAGCAATTCGAACGCCGGCGTCCGCGAGGATAAGATGACCAGTC 480 consensus_9499#1 ------------------------------------------------------------ consensus_9499#0 ATCAGCACGCCGCTCCTGGTTATAGCCGCCCAAACAATTCAGCACGAATGAAGCAGAACA 540 consensus_9499#1 ------------------------------------------------------------ consensus_9499#0 CCGCCGGCATCATGTTCGGCAACCACACCGCTTCCGATCATGGCCGCCGCTTAAACAGTT 600 consensus_9499#1 ------------------------------------------------------------ consensus_9499#0 CAGTAAGATCACTGAGAGTGATGAACCCGGCTCTCAGTCATCACCAGCTGGCAAACAATT 660 consensus_9499#1 ------------------------------------------------------------ consensus_9499#0 CAGCGTGGTGGAAGCAGAGTGAGATCAACACCGGCAGCTCAAATTATTCGGTAAGATCGC 720 consensus_9499#1 ------------------------------------------------------------ consensus_9499#0 TAGGAGAGAGCAGCTCTGCCAAGTCGTCCTCGGGAAGATCGTGGACAGAGATCAACTCTG 780 consensus_9499#1 ------------------------------------------------------------ consensus_9499#0 CCAACTCTTCGATAGTAAGATCGCGGACAAAGATCAACTCTGCTCACTCTTCGATAGTAA 840 consensus_9499#1 ------------------------------------------------------------ consensus_9499#0 GATCCCGGACAGAGATCAACTCTGCTCACTCTTCCATAGTAAGATCGCGGACAAAGATCA 900 consensus_9499#1 ------------------------------------------------------------ consensus_9499#0 ACTCTGCTCACTCTTCGATAGTAAGATCCCAGACAGAGATCAACTCTAACAGGTCCTCGA 960 consensus_9499#1 ------------------------------------------------------------ consensus_9499#0 TAAATTCGGTGAGAGAGATCAGCTCTGCCAAATCCATCCACAAAGAGAAGATCGACCCTC 1020 consensus_9499#1 ------------------------------------------------------------ consensus_9499#0 TCCTTGCTCACAGTCATCACCAGGCAAACAATTCAGTTAGGGTGAGCTACACCTGCAAGA 1080 consensus_9499#1 ------------------------------------------------------------ consensus_9499#0 ACGGCAACAAGAGCGTGCAGCAGAACGGGGTAAACAGCAGCAATTCGATGAGAAGCGAGA 1140 consensus_9499#1 ------------------------------------------------------------ consensus_9499#0 AGGCTTCCACCGCGGCTACGGCTAGGCCGCCATTACAGGGCTCCTACTCCGACGCCGGCG 1200 consensus_9499#1 ------------------------------------------------------------ consensus_9499#0 TCGCGGGCTACCCGAACGGGCAAGGCTACGCTCTCTACCAATATTCCATTGAGGATGATC 1260 consensus_9499#1 ------------------------------------------------------------ consensus_9499#0 CAACCTCCTGCGCCGTAATGTGATGTGCAGAGCAGAGGAAGCCATGAATCTAAGCTCCGG 1320 consensus_9499#1 ------------------------------------------------------------ consensus_9499#0 CAGAGGACGCAGCCTGTGCTTGATCCATG-ACCCTGCATCTGCATGATTCCTCGAACCGA 1379 consensus_9499#1 --------------------------ATGGACTGAAGGAGTAGAAAATTCCTCGAACCGA 34 *** ** * * ************** consensus_9499#0 TCGATGAGGCTTTATTTTTCTCTCGCGTATTTCGGGTGCCCGGAAATCCATGGATTATGT 1439 consensus_9499#1 TCGATGAGGCTTTATTTTTCTCTCGCGTATTTCGGGTGCCCGGAAATCCATGGATTATGT 94 ************************************************************ consensus_9499#0 GATGGTTCTTACATTACGCATGTGCATTAATCGCGACATCACGCATCCATTTGGGTAGTA 1499 consensus_9499#1 GATGGTTCTTACATTACGCATGTGCATTAATCGCGACATCACGCATCCATTTGGGTAGTA 154 ************************************************************ consensus_9499#0 GCATCTCGGGATTGTAATGTTGCGTGTTTGGATGTCCGTGTAATTTTTTCGCCGGACGCA 1559 consensus_9499#1 GCATCTCGGGATTGTAATGTTGCGTGTTTGGATGTCCGTGTAATTTTTTCGCCGGACGCA 214 ************************************************************ consensus_9499#0 TGTCTGGTGTTGTTAATGACTGTAGGCTCCTATAGTAGCAAATGACAACAAGTTTTTTTT 1619 consensus_9499#1 TGTCTGGTGTTGTTAATGACTGTAGGCTCCTATAGTAGCAAATGACAACAAGTTTTTTTT 274 ************************************************************ consensus_9499#0 ACTAAAGTATGTACTATATGCCTATACGATTAATATCATTAAACTTTAATGCTACAGGAC 1679 consensus_9499#1 ACTAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------------------ 304 ****** * * * * * * * consensus_9499#0 AGTATCCCGTTCGGATGATACTCGAAAATATAGGCGATACCTCATATGTATCATCCCATC 1739 consensus_9499#1 ------------------------------------------------------------ consensus_9499#0 CGTACTGTCGTGTAA 1754 consensus_9499#1 --------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||