These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9503#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1177 fasta sequence [AACAACTCCTTTCCATAACATTCCTTTAAAGAGGAGAAATCAACCTCTCCTATAACCTTGAAATATTTAACCCCAAGACTAGCCAACTGGCCATCCAAATCAAAGTAGTTAATCTATGGATGAAGGAAAGAATGAGAAACACAACAACATAATATCTGTTGCTTCCTCCCCTGCTCCAATCCTGCACCTGTAGACACATATCATATCCCCCCTACCAACAAATGCAAACATCTGCATGACATATATGTTCTCCCTATATATATACTAGATGTAGAATTAATTAAGTTATGATCGGTAAGGCACATGCATCATGCATGCATGCCTTTTGATCAGTTGTGTACTATATACTTGGAGTATGATCAGACTTGGAGTTGTGACCAACTGATGAGAGCCCTAGCAAAGCTACAAGGCCGTGGTCTTGTAGTGGTGGTGGTGGTGGTGGTACAGATCCTGCAACTTCTTCCACGACTCCTCCCTCTGCATCTTGAGCTGCTTGTAGAAGTTGCCGATGAACGCCTCCGCCTTGGTGAACAGCTCTTGCTTGCTCATCATCTGCTCGCCGCCGCCCCCGCCGCCGCCCTTCGTCCAGCACCCTTCCTCCTCCTCGTGGACGACGACGTCCTCGCCGTCCCCGCCCCC-GATGAAGAAGAGGCTCGCCCTCGACGGGCACCTCCTCATCTTCTTGGACTTCTTGGCCGCCGCTGCCGCCGGCAT-GGCACCGCCGGCGATGACGACGACGTCCCTGCTGCCGGCTGCAGCCTCTAACGCCGCCGCCTTCGGTGTCAAGGATGGTGAAGCGGCCACAATTACAGCGCTGCTACTGCTACTACCGTTGACATGGTGATGACGACCGTTGGTCGCCGCCGCAGCGACGTCGACTTCACCTGGTCTATTGCTGTGGCTCAGCCTCAGAGCTGCGGCGGCGGCGGCCGGCTTGGGCAGCAGCTTGTCGTCGCGCGGGCCGCTGGAGATGGCGGCGAGGAAGCCGGCCTCGACGCCGAGGGCGACGACGAGGGCGTTGAAGAGGAGGTAGAGGTAGGGCTGCCTGAGGGAGGAAGGCACCAAGGGGAGGAGGAGGTAGAGGAGGAGGAGGGACGCCATCTTGGCCACCTGGGCCAGCGTTGGAAACCTCTTCTTCTCCATGGCCATCACCATTTGTAGCTAGCTAAGAAGACTA] [+] EMBL CB652199 [AACAACTCCTTTCCATAACATTCCTTTAAAGAGGAGAAATCAACCTCTCCTATAACCTTGAAATATTTAACCCCAAGACTAGCCAACTGGCCATCCAAATCAAAGTAGTTAATCTATGGATGAAGGAAAGAATGAGAAACACAACAACATAATATCTGTTGCTTCCTCCCCTGCTCCAATCCTGCACCTGTAGACACATATCATATCCCCCCTACCAACAAATGCAAACATCTGCATGACATATATGTTCTCCCTATATATATACTAGATGTAGAATTAATTAAGTTATGATCGGTAAGGCACATGCATCATGCATGCATGCCTTTTGATCAGTTGTGTACTATATACTTGGAGTATGATCAGACTTGGAGTTGTGACCAACTGATGAGAGCCCTAGCAAAGCTACAAGGCCGTGGTCTTGTAGTGGTGGTGGTGGTGGTGGTACAGATCCTGCAACTTCTTCCACGACTCCTCCCTCTGCATCTTGAGCTGCTTGTAGAAGTTGCCGATGAACGCCTCCGCCTTGGTGAACAGCTCTTGCTTGCTCATCATCTGCTCGCCGCCGCCCCCGCCGCCGCCCTTCGTCCAGCACCCTTCCTCCTCCTCGTGGACGACGACGTCCTCGCCGTCCCCGCCCCC GATGAAGAAGAGGCTCGCCCTCGACGGGCACCTCCTCATCTTCTTGGACTTCTTGGCCGCCGCTGCCGCCGGCAT GGCACCGCCGGCGATGACGACGACG ] [-] EMBL AU164239 [ CCCCCTACCAACAAATGCAAACATCTGCATGACATATATGTTCTCCCTATATATATACTAGATGTAGAATTAATTAAGTTATGATCGGTAAGGCACATGCATCATGCATGCATGCCTTTTGATCAGTTGTGTACTATATACTTGGAGTATGATCAGACTTGGAGTTGTGACCAACTGATGAGAGCCCTAGCAAAGCTACAAGGCCGTGGTCTTGTAGTGGTGGTGGTGGTGGTGGTACAGATCCTGCAACTTCTTCCACGACTCCTCCCTCTGCATCTTGAGCTGCTTGTAGAAGTTGCCGATGAACGCCTCCGCCTTGGT ] [-] EMBL AU078053 [ ttttTGACATATATGTTCTCCCTATATATATACTAGATGTAGAATTAATTAAGTTATGATCGGTAAGGCACATGCATCATGCATGCATGCCTTTTGATCAGTTGTGTACTATATACTTGGAGTATGATCAGACTTGGAGTTGTGACCAACTGATGAGAGCCCTAGCAAAGCTACAAGGCCGTGGTCTTGTAGTGGTGGTGGTGGTGGTGGTACAGATCCTGCAACTTCTTCCACGACTCCTCCCTCTGCATCTTGAGCTGCTTGTAGAAGTTGCCGATGAACGCCTCCGCCTTGGTGAACAGCTCTTGCTTGCTCATCATCTGCTCGCCGCCGCCCCCGCCGCCGCCCTTCGTCCAGCACCCTTCCTCCTCCTCGTGGACGACGACGTCCTCGCCGTCCCCGCCCCCGGATGAAGAAGAGGCTCGCCCTCGACGGGCACCTCCTCATCTTCTTGGANTTCTTGGCCGCCGCTGCCGCCGGCATGGGCACCGCCGG ] [-] EMBL CB652198 [ CTGCTTGTAGAAGTTGCCGATGAACGCCTCCGCCTTGGTGAACAGCTCTTGCTTGCTCATCATGTGCTCGCCGCCGCCCCCGCCGCCGCCCTTCGTCCAGCACCCTTCCTCCTCCTCGTGGACGACGACGTCCTCGCCGTCCCCGCCCCC GATGAAGAAGAGGCTCGCCCTCGACGGGCACCTCCTCATCTTCTTGGACTTCTTGGCCGCCGCTGCCGCCGGCAT GGCACCGCCGGCGATGACGACGACGTCCCTGCTGCCGGCTGCAGCCTCTAACGCCGCCGCCTTCGGTGTCAAGGATGGTGAAGCGGCCACAATTACAGCGCTGCTACTGCTACTACCGTTGACATGGTGATGACGACCGTTGGTCGCCGCCGCAGCGACGTCGACTTCACCTGGTCTATTGCTGTGGCTCAGCCTCAGAGCTGCGGCGGCGGCGGCCGGCTTGGGCAGCAGCTTGTCGTCGCGCGGGCCGCTGGAGATGGCGGCGAGGAAGCCGGCCTCGACGCCGAGGGCGACGACGAGGGCGTTGAAGAGGAGGTAGAGGTAGGGCTGCCTGAGGGAGGAAGGCACCAAGGGGAGGAGGAGGTAGAGGAGGAGGAGGGACGCCATCTTGGCCACCTGGGCCAGCGTTGGAAACCTCTTCTTCTCCATGGCCATCACCATTTGTAGCTAGCTAAGAAGACTA] consensusID : consensus_9503#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence [TTCGCCGCCGCCCCCCGCCGCCGCCCNTTCGTCCAAGAACCTTTCTTCCTTCCTCCTTGGAACGACGACCTTCCTCGCCCTTCCCCGCCCCCCCGATGAAAGAAGAAGCTTCGCCTTCGAACGGGCAACTTCCTTCATCTTTCTTGGAACTTTCTTGGCCCGCCCGTTNCCCGCCGNCATGGCACCGCCGGCCGATGACGACGACCTTCCCTTGCTGCCCGGNTGCAGCCTCTAACGCCGCCCGCCTTCGGTGTCAAGGGATGTTGAAAGCGGCCCACAATTAACAGCGCTGCTACTGCTACTACCGTTGACATGGTGATGANACCGTTGGTCGCCGCCGCAGCGACGTCGACTTCACCTGGTCTATTGCTGTGGCTCAGCCTCAGAGCTGCGGCGGCGGCGGCCGGCTTGGGCAGCAGCTTGTCGTCGCGCGGGCCGCTGGAGATGGCGGCGAGGAAGCCGGCCTCGACGCCGAGGGCGACGACGAGGGCGTTGAAGAGGAGGTAGAGGTAGGGCTGCCTGAGGGAGGAAGGCACCAAGGGGAGGAGGAGGNAGAGGAGGAGGAGGGACGCCATCTTGGCCACCTGGGCCAGCGTTGGAAACCTCTTCTTCTCCATGGCCATCACCATTTGTAGCTAGCTAAGGCTACTAGAGTCTAGG] [-] EMBL AU078052 [TTCGCCGCCGCCCCCCGCCGCCGCCCNTTCGTCCAAGAACCTTTCTTCCTTCCTCCTTGGAACGACGACCTTCCTCGCCCTTCCCCGCCCCCCCGATGAAAGAAGAAGCTTCGCCTTCGAACGGGCAACTTCCTTCATCTTTCTTGGAACTTTCTTGGCCCGCCCGTTNCCCGCCGNCATGGCACCGCCGGCCGATGACGACGACCTTCCCTTGCTGCCCGGNTGCAGCCTCTAACGCCGCCCGCCTTCGGTGTCAAGGGATGTTGAAAGCGGCCCACAATTAACAGCGCTGCTACTGCTACTACCGTTGACATGGTGATGANACCGTTGGTCGCCGCCGCAGCGACGTCGACTTCACCTGGTCTATTGCTGTGGCTCAGCCTCAGAGCTGCGGCGGCGGCGGCCGGCTTGGGCAGCAGCTTGTCGTCGCGCGGGCCGCTGGAGATGGCGGCGAGGAAGCCGGCCTCGACGCCGAGGGCGACGACGAGGGCGTTGAAGAGGAGGTAGAGGTAGGGCTGCCTGAGGGAGGAAGGCACCAAGGGGAGGAGGAGGNAGAGGAGGAGGAGGGACGCCATCTTGGCCACCTGGGCCAGCGTTGGAAACCTCTTCTTCTCCATGGCCATCACCATTTGTAGCTAGCTAAGGCTACTAGAGTCTAGG] consensusID : consensus_9503#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 396 fasta sequence [GGGAAGACCAGAAGAACTCCTTTCCATAACATTTCTTACTTTAGGAGAAATCAAACTCTCCTATAACCTTGAAATATTTAACCCCAAGACTAGCCAACGGGCATCAAATCAAAGTAGTTAATCTATGGATGAAGGAAAGAATGAGAAACACAACAAGCATAATATCTGTGGTTCCTCCCCGTGGTCCAATCCGTGACCGTGTAGACACATATCATATCCCCCCTACCAACAAAGTGGCAACATCTGGATGACATATATGTTCTCCCTATATATTATNACTAGCATGTAGACATTAATTAAGTTCATGATCGGNAAGGCGACATGCGATCATGGGATGGATGGCTTTGTGATCCAGTTGTTGTACTATATACTTGGAGTATGATCAGAATTGGAGTT] [-] EMBL BM038959 [GGGAAGACCAGAAGAACTCCTTTCCATAACATTTCTTACTTTAGGAGAAATCAAACTCTCCTATAACCTTGAAATATTTAACCCCAAGACTAGCCAACGGGCATCAAATCAAAGTAGTTAATCTATGGATGAAGGAAAGAATGAGAAACACAACAAGCATAATATCTGTGGTTCCTCCCCGTGGTCCAATCCGTGACCGTGTAGACACATATCATATCCCCCCTACCAACAAAGTGGCAACATCTGGATGACATATATGTTCTCCCTATATATTATNACTAGCATGTAGACATTAATTAAGTTCATGATCGGNAAGGCGACATGCGATCATGGGATGGATGGCTTTGTGATCCAGTTGTTGTACTATATACTTGGAGTATGATCAGAATTGGAGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9503#0 AACAACTCCTTTCCATAACATTCCTTTAAAGAGGAGAAATCAACCTCTCCTATAACCTTG 60 consensus_9503#1 ------------------------------------------------------------ consensus_9503#2 ------------------------------------------------------------ consensus_9503#0 AAATATTTAACCCCAAGACTAGCCAACTGGCCATCCAAATCAAAGTAGTTAATCTATGGA 120 consensus_9503#1 ------------------------------------------------------------ consensus_9503#2 ------------------------------------------------------------ consensus_9503#0 TGAAGGAAAGAATGAGAAACACAACAACATAATATCTGTTGCTTCCTCCCCTGCTCCAAT 180 consensus_9503#1 ------------------------------------------------------------ consensus_9503#2 ------------------------------------------------------------ consensus_9503#0 CCTGCACCTGTAGACACATATCATATCCCCCCTACCAACAAATGCAAACATCTGCATGAC 240 consensus_9503#1 ------------------------------------------------------------ consensus_9503#2 ------------------------------------------------------------ consensus_9503#0 ATATATGTTCTCCCTATATATATACTAGATGTAGAATTAATTAAGTTATGATCGGTAAGG 300 consensus_9503#1 ------------------------------------------------------------ consensus_9503#2 ------------------------------------------------------------ consensus_9503#0 CACATGCATCATGCATGCATGCCTTTTGATCAGTTGTGTACTATATACTTGGAGTATGAT 360 consensus_9503#1 ------------------------------------------------------------ consensus_9503#2 ------------------------------------------------------------ consensus_9503#0 CAGACTTGGAGTTGTGACCAACTGATGAGAGCCCTAGCAAAGCTACAAGGCCGTGGTCTT 420 consensus_9503#1 ------------------------------------------------------------ consensus_9503#2 ------------------------------------------------------------ consensus_9503#0 GTAGTGGTGGTGGTGGTGGTGGTACAGATCCTGCAACTTCTTCCACGACTCCTCCCTCTG 480 consensus_9503#1 ------------------------------------------------------------ consensus_9503#2 ------------------------------------------------------------ consensus_9503#0 CATCTTGAGCTGCTTGTAGAAGTTGCCGATGAACGCCTCCGCCTTGGTGAACAGCTCTTG 540 consensus_9503#1 ------------------------------------------------------------ consensus_9503#2 ------------------------------------------------------------ consensus_9503#0 CTTGCTCATCATCTGCTCGCCGCCGCCCCC-GCCGCCGCCCTT-CGTCCAGCACCCTTCC 598 consensus_9503#1 ---------------TTCGCCGCCGCCCCCCGCCGCCGCCCNTTCGTCCAAGAACCTTTC 45 consensus_9503#2 ------------------------------------------------------------ consensus_9503#0 TCC--TCCTCGT--GGACGACGACGT-CCTCGCCGTCCCCG---CCCCCGATGAA-GAAG 649 consensus_9503#1 TTCCTTCCTCCTTGGAACGACGACCTTCCTCGCCCTTCCCCGCCCCCCCGATGAAAGAAG 105 consensus_9503#2 -------------------------------------------------GGGAAGACCAG 11 * * ** consensus_9503#0 AGGCT-CGCCCTCGA-CGGGCACCTCC--TCATCTT-CTTGGA--CTTCTTGGCCG--CC 700 consensus_9503#1 AAGCTTCGCCTTCGAACGGGCAACTTCCTTCATCTTTCTTGGAACTTTCTTGGCCCGCCC 165 consensus_9503#2 AAGAACTCCTTTCCA-----TAACATTTCTTACTTTAGGAGAA----ATCAAACTCTCCT 62 * * * ** * * * * * ** * * * * consensus_9503#0 GCTGCC-GCCGGCATGGCACCGCCGGC-GATGACGACGACGTCCC--TGCTGCC-GGCTG 755 consensus_9503#1 GTTNCCCGCCGNCATGGCACCGCCGGCCGATGACGACGACCTTCCCTTGCTGCCCGGNTG 225 consensus_9503#2 ATAACCTTGAAATATTTAACCCCAAGACTA-GCCAACGGGCATCA----------AATCA 111 ** ** *** * * * * * *** * consensus_9503#0 CAGCCTCTAACGCCGCC-GCCTTCGGTGTCAAGG-ATGGTGAA-GCGGCC-ACAATTA-C 810 consensus_9503#1 CAGCCTCTAACGCCGCCCGCCTTCGGTGTCAAGGGATGTTGAAAGCGGCCCACAATTAAC 285 consensus_9503#2 AAGTAGTTAAT-CTATGGATGAAGGAAAGAATGAGAAACACAACAAGCATAATATCTGTG 170 ** *** * * * * * ** * * * * consensus_9503#0 AGCGCTGCTACTGCTACTACCGTTGAC-ATGGTGATGACGACCGTTGGTCGCCGCCGCAG 869 consensus_9503#1 AGCGCTGCTACTGCTACTACCGTTGAC-ATGGTGATGAN-ACCGTTGGTCGCCGCCGCAG 343 consensus_9503#2 GTTCCTCCCCGTGGTCCAATCCGTGACCGTGTAGACACATATCAT--ATCCCCCCTACCA 228 ** * ** * * * * **** ** ** * * * ** ** * * consensus_9503#0 CGACGTCGACTTCACCTGGTCTATTGCTGTGGCTCAGCCTCAGAGCTGCGGCGGCGGCGG 929 consensus_9503#1 CGACGTCGACTTCACCTGGTCTATTGCTGTGGCTCAGCCTCAGAGCTGCGGCGGCGGCGG 403 consensus_9503#2 ACAAAGTGGCAACATCTGGATGACATATATG-TTCTCCCTATATATTATNACTAGCATGT 287 * * * ** **** * * ** ** *** * * * consensus_9503#0 CCGGCTTGGGCAGCAGCTTGTCGTCGCGCGGGCCGCTGGAGATGGCGGCGAGGAAGCCGG 989 consensus_9503#1 CCGGCTTGGGCAGCAGCTTGTCGTCGCGCGGGCCGCTGGAGATGGCGGCGAGGAAGCCGG 463 consensus_9503#2 AGACATTAATTA--AGTTCATGATCGGNAAGGCGACATGCGATCATGGGATGGA---TGG 342 ** * ** * * *** *** * * *** ** *** ** consensus_9503#0 CCTCGACGCCGAGGGCGACGACGAGGGCGTTGAAGAGGAGGTAGAGGTAGGGCTGCCTGA 1049 consensus_9503#1 CCTCGACGCCGAGGGCGACGACGAGGGCGTTGAAGAGGAGGTAGAGGTAGGGCTGCCTGA 523 consensus_9503#2 CTTTGTGATCCAGTTGTTGTACTATATACTTGGAGTATGATCAGAATTGGAGTT------ 396 * * * * ** ** * *** ** *** * * * * consensus_9503#0 GGGAGGAAGGCACCAAGGGGAGGAGGAGGTAGAGGAGGAGGAGGGACGCCATCTTGGCCA 1109 consensus_9503#1 GGGAGGAAGGCACCAAGGGGAGGAGGAGGNAGAGGAGGAGGAGGGACGCCATCTTGGCCA 583 consensus_9503#2 ------------------------------------------------------------ consensus_9503#0 CCTGGGCCAGCGTTGGAAACCTCTTCTTCTCCATGGCCATCACCATTTGTAGCTAGCTAA 1169 consensus_9503#1 CCTGGGCCAGCGTTGGAAACCTCTTCTTCTCCATGGCCATCACCATTTGTAGCTAGCTAA 643 consensus_9503#2 ------------------------------------------------------------ consensus_9503#0 GAAGACTA--------- 1177 consensus_9503#1 GGCTACTAGAGTCTAGG 660 consensus_9503#2 ----------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||