These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9507#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 630 fasta sequence [CAAAACACATAAGAGAAATTCAATAATTACACACAAAAAAAATAAGGCATAAGAAGGCAGCTGCAGCTGCTAGCTGCTGTTGTTGTTGGTAGTAGTTTTTTGGGCACCAATTTTCCATGGAGACGAAGGTGAGGATGAGCTGCAGGTTGGGCACTATGGTGGCCCTGGTGCTGGTGGGCGTCGTGCTGGCGGCGATCCTGCAGGAGGCCACCGTCGACGCGGCATCGTCCAGCAGCGACTCGCCGGCGGCGAAATCGGGCACCGGCTACCTCGACTACGGCAACCTCAAGGCGAAGCTG-CCTCCACCGGGCGTCGCCGTTACCAAGAGGCCATGCATAGCAAAAGAGAAATGCCGCGGC-TGATCGATCGATCGATCGATCATCACCGACGTACCCAGACGGA-TGAAACGGATCGACGTACGTAC-TGCTTATGGTGTCAG-CGTGTTCTTGTTTTTTTTTTCTTTTCTTTTCTTTCTTTCCGATGGAATTGAAACGTGTGTGTTCTTGTTTTTCTTCTTCTCATGGCATCGCCTTGGCTTTCTATATATAATGAGGTTTTTAATGTCACTAATTAATTAACCACCTGGGATATATAGGCCACATTGGTGAAAATCCAAAAAAAAAAAAAAAA] [+] EMBL AK106951 [CAAAACACATAAGAGAAATTCAATAATTACACACAAAAAAAATAAGGCATAAGAAGGCAGCTGCAGCTGCTAGCTGCTGTTGTTGTTGGTAGTAGTTTTTTGGGCACCAATTTTCCATGGAGACGAAGGTGAGGATGAGCTGCAGGTTGGGCACTATGGTGGCCCTGGTGCTGGTGGGCGTCGTGCTGGCGGCGATCCTGCAGGAGGCCACCGTCGACGCGGCATCGTCCAGCAGCGACTCGCCGGCGGCGAAATCGGGCACCGGCTACCTCGACTACGGCAACCTCAAGGCGAAGCTG CCTCCACCGGGCGTCGCCGTTACCAAGAGGCCATGCATAGCAAAAGAGAAATGCCGCGGC TGATCGATCGATCGATCGATCATCACCGACGTACCCAGACGGA TGAAACGGATCGACGTACGTAC TGCTTATGGTGTCAG CGTGTTCTTGTTTTTTTTTTCTTTTCTTTTCTTTCTTTCCGATGGAATTGAAACGTGTGTGTTCTTGTTTTTCTTCTTCTCATGGCATCGCCTTGGCTTTCTATATATAATGAGGT ] [+] EMBL AU078656 [ AATAATTACACNCAAAAAAAATAAGGCATAAGAAGGCAGCTGCAGCTGCTAGCTGCTGTTGTTGTTGGTAGTAGTTTTTTGGGCACCAATTTTCCATGGAGACGAAGGTGAGGATGAGCTGCAGGTTGGGCACTATGGTGGCCCTGGTGCTGGTGGGCGTCGTGCTGGCGGCGATCCTGCAGGAGGCCACCGTCGACGCGGCATCGTCCAGCAGCGACTCGCCGGCGGCGAAATCGGGCACCGGCTACCTCGACTACGGCAACCTCAAGGCGAAGCTG CCTCCACCGGGCGTCGCCGTTACCAAGAGGCCATGCATAGCAAAAGAGAAATGCCGCGGC TGATCGATCGATCGATCGATCATCACCGACGTACCCAGACGGA TGAAACGGATCGACGTACGTAC TGCTTATGGTGTCAG CGTGTTCTTGTTTTTTTTTTCTTTTCTTTTCTTTCTTTCCGATGGAATTGAAACGTGTGTGTTCTTGTTTTTCTTCTTCTCATGGCATCGCCTTGGCTTTCTATATATAATGAGGTTTTTAATGTCACTAATTAATTAACCACCTGGGATATATAGGCCACATTGGTGAAAATCCAAAAAAAAAAAAAAAA] [+] EMBL C73345 [ AATAATTACACACAAAAAAAATAAGGCATAAGAAGGCAGCTGCAGCT CTAGCT CTGTTGTTGTTGGTAGTAGTTTTTTGGGCACCAATTTTCCATGGAGACGAAGGTGAGGATGAGCTGCAGGTTGGGCACTATGGTGGCCCTGGTGCTGGTGGGCGTCGTGCTGGCGGCGATCCTGCAGGAGGCCACCGTCGACGCGGCATCGTCCAGCAGCGACTCGCCGGCGGGAAAATCGGGCACCGGCTACCTCGACTACGGCAACCTCAAGGCGAAGTTGCCCTCCACCGGGCGTCGCCGTTACCAAGAGGCCATGCATA ] [+] EMBL AU078660 [ ACACAAAAAAAATAAGGCATAAGAAGGCAGCTGCAGCTGCTAGCTGCTGTTGTTGTTGGTAGTAGTTTTTTGGGCACCAATTTTCCATGGAGACGAAGGTGAGGATGAGCTGCAGGTTGGGCACTATGGTGGCCCTGGTGCTGGTGGGCGTCGTGCTGGCGGCGATCCTGCAGGAGGCCACCGTCGACGCGGCATCGTCCAGCAGCGACTCGCCGGCGGCGAAATCGGGCACCGGCTACCTCGACTACGGCAACCTCAAGGCGAAGCTG CCTCCACCGGGCGTCGCCGTTACCAAGA GCCATGCATAGCAAAAGAGAAATGCCGCGGC TGATCGATCGATCGATCGATCATCACCGACGTACCCAGACGGA TGAAACGGATCGACGTACGTAC TGNTTATGGTGTCAGCCGTGTTCTTGGTTTTTTTTTCTTTTCTTTTCTTTCTTTCCGATGGAATTGAAACGTGTGTGTTCTTGGTTTTCTTCTTCTCATGGCATCGNCTTGGCTTTCTATATA ] [+] EMBL C72945 [ ATCCTGCAGGAGGCCACCGTCGACGCGGCATCGTCCAGCAGCGACTCGCCGGCGGCAAANTCGGGCACCGGCTACCTCGACTACGGCAACCTCAAGGCGAA NTG CCTCCACCGGGCGTCGCCGTTACCAAGAGGCCATGCATAGCAAAAGAGAAATGCCGCGGCTTGATCGATCGATCGATCGATCATCACCGACGTACCCAGACGGATTGAAACGGATCGACGTACGTACTTGCTTATGGTGTCAG CGTGTTCTTGTTTTTTTTTTCTTTTCTTTTCTTTCTTTCCGATGG ATTG AACGTGTGTGTTCTTGGTTTTCTTCTTCCCANGGCATC ] consensusID : consensus_9507#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 322 fasta sequence [AAGGCGAAGCTGCCTCCACCGGGCGTCGCCGTTACCAANAGGCCATGCATAGCAAAANAGAAATGCCNCGGCTGATCGATCGATCGATCGATCATCACCGACGTACCCAGACGGATGAAACGGATCGACGTACGTACTGCTTATGGNGTCAGCGTGTTCTTGTTTTTTTTTTCTTTTCTTTTCTTTCTTTCCGATGGAATTGAAACGTGTGTGTTCTTGTTTTTCTTCTTCTCATGGCATCGCCTTGGCTTTCTATATATAATGAGGTTTTTAATGTCACTAATTAATTAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU078661 [AAGGCGAAGCTGCCTCCACCGGGCGTCGCCGTTACCAANAGGCCATGCATAGCAAAANAGAAATGCCNCGGCTGATCGATCGATCGATCGATCATCACCGACGTACCCAGACGGATGAAACGGATCGACGTACGTACTGCTTATGGNGTCAGCGTGTTCTTGTTTTTTTTTTCTTTTCTTTTCTTTCTTTCCGATGGAATTGAAACGTGTGTGTTCTTGTTTTTCTTCTTCTCATGGCATCGCCTTGGCTTTCTATATATAATGAGGTTTTTAATGTCACTAATTAATTAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9507#0 CAAAACACATAAGAGAAATTCAATAATTACACACAAAAAAAATAAGGCATAAGAAGGCAG 60 consensus_9507#1 ------------------------------------------------------------ consensus_9507#0 CTGCAGCTGCTAGCTGCTGTTGTTGTTGGTAGTAGTTTTTTGGGCACCAATTTTCCATGG 120 consensus_9507#1 ------------------------------------------------------------ consensus_9507#0 AGACGAAGGTGAGGATGAGCTGCAGGTTGGGCACTATGGTGGCCCTGGTGCTGGTGGGCG 180 consensus_9507#1 ------------------------------------------------------------ consensus_9507#0 TCGTGCTGGCGGCGATCCTGCAGGAGGCCACCGTCGACGCGGCATCGTCCAGCAGCGACT 240 consensus_9507#1 ------------------------------------------------------------ consensus_9507#0 CGCCGGCGGCGAAATCGGGCACCGGCTACCTCGACTACGGCAACCTCAAGGCGAAGCTGC 300 consensus_9507#1 -----------------------------------------------AAGGCGAAGCTGC 13 ************* consensus_9507#0 CTCCACCGGGCGTCGCCGTTACCAAGAGGCCATGCATAGCAAAAGAGAAATGCCGCGGCT 360 consensus_9507#1 CTCCACCGGGCGTCGCCGTTACCAANAGGCCATGCATAGCAAAANAGAAATGCCNCGGCT 73 ************************* ****************** ********* ***** consensus_9507#0 GATCGATCGATCGATCGATCATCACCGACGTACCCAGACGGATGAAACGGATCGACGTAC 420 consensus_9507#1 GATCGATCGATCGATCGATCATCACCGACGTACCCAGACGGATGAAACGGATCGACGTAC 133 ************************************************************ consensus_9507#0 GTACTGCTTATGGTGTCAGCGTGTTCTTGTTTTTTTTTTCTTTTCTTTTCTTTCTTTCCG 480 consensus_9507#1 GTACTGCTTATGGNGTCAGCGTGTTCTTGTTTTTTTTTTCTTTTCTTTTCTTTCTTTCCG 193 ************* ********************************************** consensus_9507#0 ATGGAATTGAAACGTGTGTGTTCTTGTTTTTCTTCTTCTCATGGCATCGCCTTGGCTTTC 540 consensus_9507#1 ATGGAATTGAAACGTGTGTGTTCTTGTTTTTCTTCTTCTCATGGCATCGCCTTGGCTTTC 253 ************************************************************ consensus_9507#0 TATATATAATGAGGTTTTTAATGTCACTAATTAATTAACCACCTGGGATATATAGGCCAC 600 consensus_9507#1 TATATATAATGAGGTTTTTAATGTCACTAATTAATTAACCAA------------------ 295 ***************************************** consensus_9507#0 ATTGGTGAAAATCCAAAAAAAAAAAAAAAA 630 consensus_9507#1 ---AAAAAAAAAAAAAAAAAAAAAAAAAAA 322 **** **************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||