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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9512#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 707 fasta sequence
[CCTGCCGTGCCAGGGCATCCAGCTGCACAACGTCGACCTCAAGTACGCCGGCCAAGGGAACACCACCCTCTCCGTCTGCAAGAACGTCGCCGGCAAGTCCAGCAACGTCGCCAAGGAGCTCGCCTGCGTCTGATTTTCATCTTATTATACTACTCTTCCGTTTCATATTACAAAGTCATTTGTTTTTTTTTAAAGCCAATTTTTTCAAAGTTTGACCAAAGTTTTTTAAAAAATATAGTAGTATTTTCAATATGAAAAGAACATATTATCAGAATATATTTCATATTGGATTTAATTAGACTAATTTAATATTTTATATGTTGCTATATTTTTTTTATAAATTTGTTTAAACTAAATAAAAATTGACTAGAAAAAGTCAAACAACTTATAATATGAAATGGAGATAGGGGGAGTAATTGTCGTCTGATTATATAGTTGTAAGTTAATCATCGTTCCCTCCGCTACATTCCCCTCACTTGTATTCTTCATCTAATTATTTTCCTCTCTCTCCCTCTTCGGATTTTTTTAATTATTTTCTTCTATTTAAAAATATGTTTGCTTCTTCTTCGTTTGGAATATATGATTCTTGTCCTGATTTCATTTCATTTAGTTTACTCGTTAATTGATTTATTAATTAATTGTTATCCGTTTAGTTGTCGTAGTTTAATCTCTTCAGTTCAATTATTTTTTTGTTTGATTCTTAAAAA]
[+] EMBL AU222575 [CCTGCCGTGCCAGGGCATCCAGCTGCACAACGTCGACCTCAAGTACGCCGGCCAAGGGAACACCACCCTCTCCGTCTGCAAGAACGTCGCCGGCAAGTCCAGCAACGTCGCCAAGGAGCTCGCCTGCGTCTGATTTTCATCTTATTATACTACTCTTCCGTTTCATATTACAAAGTCATTTGTTTTTTTTTAAAGCCAATTTTTTCAAAGTTTGACCAAAGTTTTTTAAAAAATATAGTAGTATTTTCAATATGAAAAGAACATATTATCAGAATATATTTCATATTGGATTTAATTAGACTAATTTAATATTTTATATGTTGCTATATTTTTTTTATAAATTTGTTTAAACTAAATAAAAATTGACTAGAAAAAGTCAAACAACTTATAATATGAAATGGAGATAGGGGGAGTAATTGTCGTCTGATTATATAGTTGTAAGTTAATCATCGTTCCCTCCGCTACATTCCCCTCACTTGTATTCTTCATCTAATTATTTTCCTCTCTCTCCCTCTTCGGATTTTTTTAATTATTTTCTTCTATTTAAAAA ]
[+] EMBL CA765557 [ gtGTTAATCATCGTTCCCTCCGCTACATTCCCCTCACTTGTATTCTTCATCTAACTATTTTCCTCTCTCTCCCTCTTCGGATTTTTTTAATTATTTTCTTCTATTTATTTTTATGTTTGCTTCTTCTTCGTTTGGAATATATGATTCTTGTCCTGATTTCATTTCATTTAGTTTACTCGTTAATTGATTTATTAATTAATTGTTATCCGTTTAGTTGTCGTAGTTTAATCTCTTCAGTTCAATTATTTTTTTGTTTGATTCTTAAAAA]
consensusID : consensus_9512#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 618 fasta sequence
[TGGAGGACATCATGGTCACCAANTGCACGAATAAAGGGCACCACGAACGGGCTTCCGGATCAAGTCGTACGAGGACTCCAAGTCGCAGCTGAGGGCGACCAAGTTCCTGTACGACGGCATCACCATGGACGAACGTGAGCTACCCGATCATCATCGACCAGAAGTACTGCCCCAACAACATCTGCTCCGCGTCCGGCACGTCCAAGGTCGCCGTCACCGACATGGTCTTCAAGAACATCGTCGGCACGTCGGCGACGCCCGAGGCCGTCACGCTCAACTGCGCCAACAACCTGCCGTGCCAGGGCATCCAGCTGCACAACGTCGACCTCAAGTACGCCGGCCAAGGGAACACCACCCTCTCCGTNTGCAANAACGTCGCCGGCAAGTCCAGCAACGTCGCCAAGGAGCTCGCCTGCGTCTGATTTTCATCTTATTANACTACTCTTCCGTTTCATATTACAAAGTCATTTGTTTTTTTTTAAAGCCAATTTTTTCAAAGTTTGACCAAAGTTTTTTAAAAAATATAGTAGTATTTTCAATATGAAAAGAACATATTATCAGAATATATTTCATATTGGATTTAATTAGACTAATTTAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU082676 [TGGAGGACATCATGGTCACCAANTGCACGAATAAAGGGCACCACGAACGGGCTTCCGGATCAAGTCGTACGAGGACTCCAAGTCGCAGCTGAGGGCGACCAAGTTCCTGTACGACGGCATCACCATGGACGAACGTGAGCTACCCGATCATCATCGACCAGAAGTACTGCCCCAACAACATCTGCTCCGCGTCCGGCACGTCCAAGGTCGCCGTCACCGACATCGTCTTCAAGAACATCGTCGGCACGTCGGCGACGCCCGAGGCCGTCACGCTCAACTGCGCCAACAACCTGCCGTGCCAGGGCATCCAGCTGCACAACGTCGACCTCAAGTACGCCGGCCAAGGGAACACCACCCTCTCCGTCTGCAAGAACGTCGCCGGCAAGTCCAGCAACGTCGCCAAGGAGCTCGCCTGCGTCTGATTTTCATCTTATTATACTACTCTTCCGTTTCATATTACAAAGTCATTTGTTTTTTTTTAAAGCCAATTTTTTCAAAGTTTGACCAAAGTTTTTTAAAAAATATAGTAGTATTTTCAATATGAAAAGAACATATTATCAGAATATATTTCATATTGGATTTAATTAGACTAATTTAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU172897 [ GCGTCCGGCACGTCCAAGGTCGCCGTCACCGACATGGTCTTCAAGAACATCGTCGGCACGTCGGCGACGCCCGAGGCCGTCACGCTCAACTGCGCCAACAACCTGCCGTGCCAGGGCATCCAGCTGCACAACGTCGACCTCAAGTACGCCGGCCAAGGGAACACCNCCCTCTCCGTNTGCAANAACGTCGCCGGCAAGTCCAGCAACGTCGCCAAGGAGCTCGCCTGCGTCTGATTTTCATCTTATTANACTACTCTTCCGTTTCATATTACAAAGTCATTTGTTTTTTTTTAAAGCCAATTTTTTCAAAGTTTGACCAAAGTTTTTTAAAAAATATAGTAGTATTTTCAATATGAAAAGAACATATTATCAGAATATATTTCATATTGGATTTAATTAGNCTAATTTAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU172932 [ CACGTCCAAGGTCGCCGTCACCGACATGGTCTTCAAGAACATCGTCGGCACGTCGGCGACGCCCNAGGCCGTCACGCTCAACTGCGCCAACAACCTGCCGTGCCAGGGCATCCAGCTGCACAACGTCGACCTCAAGTACGCCGGCCAAGGGAACACCACCCTCTCCGTNTGCAANAACGTCGCCGGCAAGTCCAGCAACGTCGCCAAGGAGCTCGCCTGCGTCTGATTTTCATCTTATTANACTACTCTTCCGTTTCATATTACAAAGTCATTTGTTTTTTTTTAAAGCCAATTTTTTCAAAGTTTGACCAAAGTTTTTTAAAAAATATAGTAGTATTTTCAATATGAAAAGAACATATTATCAGAATATATTTCATATTGGATTTAATTAGACTNATTTAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_9512#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 597 fasta sequence
[GACGAGACAAGGGGCTCGCCTGCGTCTGATTTTNTCCTATATATTATACTACTCTTCCGTTTCATATTACAAAGTCATTTGTTTTTTTTAAAGCCCTTTTTTTAAAGTTTGACCAAAGTTTTTTAAAAAATATAGTAGTATTTTCAATATGAAAAGAACATATTATCAGAATATATTTCATATTGGATTTAATTATACTAATTTAATATTTTATATGTTGCTACATTTTTTTTATAAATTTGTTAGAAAAAGTCAAACAACTTATAATATGAAATGGAGATAGGGGGAGTAATTGTGTTAATCATCGTTCCCTCCGCCACATTCCCCTCACTTGTATTCTTCATCTAATTATTTTCCTCTCTCTCCCTCTTCGGATTTTTTTAATTATTTTCTTCTATTTATTTTTATGTTTGCTTCTTCTTCGTTTGGAATATATGATTCTTGTCCTGATTTCATTTCATTTAGTTTACTCGTTAATTGATTTATTAATTAATTGTTATCCGTTTAGTTGTCGTAGTTTAATCTCTTCAGTTCAATTATTTTTTTGTTTTGAAAAGAAGAAAAAAAAATTAAAAAAAAAAAAAAAAAAAATGAAAA]
[+] EMBL CA766174 [GACGAGACAAGGGGCTCGCCTGCGTCTGATTTTNTCCTATATATTATACTACTCTTCCGTTTCATATTACAAAGTCATTTGTTTTTTTTAAAGCCCTTTTTTTAAAGTTTGACCAAAGTTTTTTAAAAAATATAGTAGTATTTTCAATATGAAAAGAACATATTATCAGAATATATTTCATATTGGATTTAATTATACTAATTTAATATTTTATATGTTGCTACATTTTTTTTATAAATTTGTTAGAAAAAGTCAAACAACTTATAATATGAAATGGAGATAGGGGGAGTAATTGTGTTAATCATCGTTCCCTCCGCCACATTCCCCTCACTTGTATTCTTCATCTAATTATTTTCCTCTCTCTCCCTCTTCGGATTTTTTTAATTATTTTCTTCTATTTATTTTTATGTTTGCTTCTTCTTCGTTTGGAATATATGATTCTTGTCCTGATTTCATTTCATTTAGTTTACTCGTTAATTGATTTATTAATTAATTGTTATCCGTTTAGTTGTCGTAGTTTAATCTCTTCAGTTCAATTATTTTTTTGTTTTGAAAAGAAGAAAAAAAAATTAAAAAAAAAAAAAAAAAAAATGAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9512#0 CCTGCCGTGCCAGGGCATCCAGCTGCACAACGTCGACCTCAAGTACGCCGGCCAAGGGAA 60
consensus_9512#2 ------------------------------------------------------------
consensus_9512#1 ------------------------------------------------------------
consensus_9512#0 CACCACCCTCTCCGTCTGCAAGAACGTCGCCGGCAAGTCCAGCAACGTCGCCAAGGAGCT 120
consensus_9512#2 -------------------------------------------GACGA-GACAAGGGGCT 16
consensus_9512#1 --------------------TGGAGGACATCATGGTCACCAANTGCACGAATAAAGGGCA 40
* ** * **
consensus_9512#0 CGCCTGCGTCTGATTTTCATCT---TATTATACTACTCTTCCGTTTCATATTACAAAGTC 177
consensus_9512#2 CGCCTGCGTCTGATTTTNTCCTATATATTATACTACTCTTCCGTTTCATATTACAAAGTC 76
consensus_9512#1 C---CACGAACGGGCTTCCGGATCAAGTCGTACGAGGACTCCAAGTCGCAGCTGAGGGCG 97
* ** * ** * *** * *** ** * * *
consensus_9512#0 ATTTGTTTTTTTTTAAAGCCAATTTTTTCAAAGTTTGACCAAAGTTTTTTAAAAAATATA 237
consensus_9512#2 ATTTGTTTTTTTTAAAGCCC--TTTTTTTAAAGTTTGACCAAAGTTTTTTAAAAAATATA 134
consensus_9512#1 ACCAAGTTCCTGTACGACGG--CATCACCATGGACGAACGTGAGCTACCCGATCATCATC 155
* ** * * * * * ** ** * * * **
consensus_9512#0 GTAGTATTTTCAATATGAAAAGAACATATTATCAGAATATATTTCATATTGGATTTAATT 297
consensus_9512#2 GTAGTATTTTCAATATGAAAAGAACATATTATCAGAATATATTTCATATTGGATTTAATT 194
consensus_9512#1 G-ACCAGAAGTACTGCCCCAACAACATCTGCTCCGCGTCCGGCACGT-CCAAGGTCGCCG 213
* * * * * ** ***** * ** * * * * *
consensus_9512#0 AGACTAATTTAATATTTTATA-TGTTGCTA-TATTTTTTTTATAAATTTGTTTAAACTAA 355
consensus_9512#2 ATACTAATTTAATATTTTATA-TGTTGCTA-CATTTTTTTTATAAATTTGTT-------- 244
consensus_9512#1 TCACCGACATGGTCTTCAAGAACATCGTCGGCACGTCGGCGACGCCCGAGGC-------- 265
** * * * ** * * * * * * * *
consensus_9512#0 ATAAAAATTGACTAGAAAAAGTCAAACA-ACTTATAATATGAAATGGAGATAGGGGGAGT 414
consensus_9512#2 -------------AGAAAAAGTCAAACA-ACTTATAATATGAAATGGAGATAGGGGGAGT 290
consensus_9512#1 -------------CGTCACGCTCAACTGCGCCAACAACCTGCCGTG---CCAGGGCATCC 309
* * **** * * ** ** ** ****
consensus_9512#0 AATTGTCGTCTGATTATATAGTTGTAAGTTAATCATCGTTCCCTCCGCTACATTCCCCTC 474
consensus_9512#2 AATTGT---------------------GTTAATCATCGTTCCCTCCGCCACATTCCCCTC 329
consensus_9512#1 AGCTGCAC----------------AACGTCGACCTCAAGTACGCCGGCCAAGGGAACACC 353
* ** ** * * * * * ** * * *
consensus_9512#0 ACTTGTATTCTTCATCTAATTATTTTCCTCTCTCTCCCTCTTCGGATTTTTTTAATT-AT 533
consensus_9512#2 ACTTGTATTCTTCATCTAATTATTTTCCTCTCTCTCCCTCTTCGGATTTTTTTAATT-AT 388
consensus_9512#1 ACCC-TCTCCGTNTGCAANAACGTCGCCGGCAAGTCCAGCAACGTCGCCAAGGAGCTCGC 412
** * * * * * * * ** *** * ** * *
consensus_9512#0 TTTCTTCTATTTAAAAATATGTT-TGCTTCTTCTTCGTTTGGAAT-ATATGATT-CTTGT 590
consensus_9512#2 TTTCTTCTATTTATTTTTATGTT-TGCTTCTTCTTCGTTTGGAAT-ATATGATT-CTTGT 445
consensus_9512#1 CTGCGTCTGATTTTCATCTTATTANACTACTCTTCCGTTTCATATTACAAAGTCATTTGT 472
* * *** ** * ** ** ** * ***** ** * * * ****
consensus_9512#0 CCTGATTTCATTTCATTTAGTTTACTCGTTAATTGA--TTTATTAATTAAT-TGTTATCC 647
consensus_9512#2 CCTGATTTCATTTCATTTAGTTTACTCGTTAATTGA--TTTATTAATTAAT-TGTTATCC 502
consensus_9512#1 TTTTTTTTAAAGCCAATTTTTTCAAAGTTTGACCAAAGTTTTTTAAAAAATATAGTAGTA 532
* *** * ** ** ** * ** * * *** **** *** * **
consensus_9512#0 GTTTAGTTGTCGTAGTTTAATCTCTTCAGTTCAATTATTTTTTTGTTTGATTCTTAAAAA 707
consensus_9512#2 GTTTAGTTGTCGTAGTTTAATCTCTTCAGTTCAATTATTTTTTTGTTTTGAAAAGAAGAA 562
consensus_9512#1 TTTTCAATATGAAAAGAACATATTATCAGAATA-----TATTTCATATTGGATTTAATTA 587
*** * * * ** * **** * * *** * * ** *
consensus_9512#0 -----------------------------------
consensus_9512#2 AAAAAAATTAAAAAAAAAAAAAAAAAAAATGAAAA 597
consensus_9512#1 GACTAATTTAAAAAAAAAAAAAAAAAAAAAA---- 618
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||