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Oryza sativa
cluster # 9513 cluster # 9513       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9513#0 length = 1472 sequences # 5  
consensus_9513#1 length = 212 sequences # 1  

consensusID : consensus_9513#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1472
fasta sequence
                              [ACCCGTCGTCTCGCCTTCGCCTCGCCTCGTCTGCTCCACCATCCACCACCACCACGCTACGCTTTCCTCCTCCCCCTCCACTCCAGATTTTGCTCCCCTCGAGACCACCACCAAAAGCAGCAGCACCACC-GAAAGAGGAAGCAAAGCAAAGCAAAGCAGGCGAGGTTTCAGTCTCCCAGGAATCCCCTTCCAAGAACTCCCACCCGATTCGAAGCGCTCGAGGAGGTTCTTTGCTCAATCAGAGTGGATCTTCTGCTGGGAGGATTGGGAAGAGCGGGGGAGAGATGGGGTCCGGATCTTTGCTCAAGGTTCTTGCCAAGAACTTCGATGTTCTTGCTGGGCC-TTTGG-TTGCACTAGCTTATCCGTTGTACGCTTCAGTTAAGGCAATAGAAACCAAATCCCCTGTGGATGATCAACAATGGCTCACATACTGGGTGATGTACTCATTAATAACACTGTTTGAGCTCACATTTGCATCAATTATTCAGTGGCTTCCTTTTTGGCCATCTATGAAATTGATCTTTATTTGCTGGCTTGTCTTGCCATACTTCAATGGTGCAGCCTTTGTGTACCAAAATTATGTGAGACCTATGTTTGTGAAGCACCAAATGGTTAACATTTGGTATGTCCCTCAGAAAAAGGGCCTTTTCGGTAAATCCGATGACTTCCTCACAGCACTTGATAAATTTATTGAAGAAAATGGACCTGAAGCTCTGAAGAAACTGACTAACAAGGCTGGCAAATCATCTAAACAGTCTGGCAAATCATGGAAAGATTCAAAGTCATCAAAGGAGTCAAAAGATTCGAAGTCATCAAAGGAATCCAAAGAACCAAAACCATCGAAAGATTCAAAGCAACTGAAGCCACCAAAAGTTTCGAAAGAGTCAAAGCCATTGAAGGACTCGAAAGAAGACAAGAAGGCAGTGAAAGAAGATAAGAAGGCGGCTGCGAAAGATTCGAAAGAACAGAAGAAGGCACTGAAGGACTCGAAAGAACTAAAAAAGGCGTTGAAGGACTCGAAAGAACAGGGGTCGCAGAAGGATTCAGATGAACTTAAACCAAAGAGCAACAAGCGCGTGACGTTCGCCGAGGTGGAGCCCGAGAAGGAACTCAAGGCCTCCAACAGCGACTGGCATCCGACCTCCGAGTATCACAGCGTGTACCCGGAGCACAACTCATGGAGCAGCAGCTTCATGATCTTTGAGGATGAGAACAGTTACTGGAACTAGAGATCTCTAGACCTGCCAAAAAAAAAAAGCAGCCCGGTGAAGAGTCTTCAGTTAGTTAGAAGTAGCTAGGAGGCCATTTAAACTCTCTTGTTCTAGCTGTCCTCTATCGATTGTTCTGACTTGGGTCACCATGTAACATATTTCTCTAATTTACACCAGTAGATGATGAGTAATGTAGAAATCTGCAATGTGGGTTGGTGATGAAAATGGTGATGCTGGTAGAATTCAGATTATATCAAAAAA]

[+] EMBL C28427               [ACCCGTCGTCTCGCCTTCGCCTCGCCTCGTCTGCTCCACCATCCACCACCACCACGCTACGCTTTCCTCCTCCCNCTCCACTCCAGATTTTGCTCCCCTCGAGACCACCACCAAAAGCAGNAGCACCACC GAAAGAGGAAGCAAAGCAAAGCAAAGCAGGCGAGGTTTCAGTCTCCCAGGAATCCCCTTCCAAGAACTCCCACCCGATTCGAAGCGCTCGAGGAGGTTCTTTGCTCAATCAGAGTGGATCTTCTGCTGGGAGGATTGGGAAGAGCGTGGGAGAGATGGGGTCCGNATCTTTGCTCAAGGTTCTTGCCAAGAACTTCGATGTTCTTGCTGGGCC TTTGG TTG ANTAGCTTATNCGTTGTACG TTTAGTTAA GCAATAG AACCAAAT CCCTGTGGATGATC ACAATGGCTCACATAtt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AK103473             [                                             CCACCACCACGCTACGCTTTCCTCCTCCCCCTCCACTCCAGATTTTGCTCCCCTCGAGACCACCACCAAAAGCAGCAGCACCACC GAAAGAGGAAGCAAAGCAAAGCAAAGCAGGCGAGGTTTCAGTCTCCCAGGAATCCCCTTCCAAGAACTCCCACCCGATTCGAAGCGCTCGAGGAGGTTCTTTGCTCAATCAGAGTGGATCTTCTGCTGGGAGGATTGGGAAGAGCGGGGGAGAGATGGGGTCCGGATCTTTGCTCAAGGTTCTTGCCAAGAACTTCGATGTTCTTGCTGGGCC TTTGG TTGCACTAGCTTATCCGTTGTACGCTTCAGTTAAGGCAATAGAAACCAAATCCCCTGTGGATGATCAACAATGGCTCACATACTGGGTGATGTACTCATTAATAACACTGTTTGAGCTCACATTTGCATCAATTATTCAGTGGCTTCCTTTTTGGCCATCTATGAAATTGATCTTTATTTGCTGGCTTGTCTTGCCATACTTCAATGGTGCAGCCTTTGTGTACCAAAATTATGTGAGACCTATGTTTGTGAAGCACCAAATGGTTAACATTTGGTATGTCCCTCAGAAAAAGGGCCTTTTCGGTAAATCCGATGACTTCCTCACAGCACTTGATAAATTTATTGAAGAAAATGGACCTGAAGCTCTGAAGAAACTGACTAACAAGGCTGGCAAATCATCTAAACAGTCTGGCAAATCATGGAAAGATTCAAAGTCATCAAAGGAGTCAAAAGATTCGAAGTCATCAAAGGAATCCAAAGAACCAAAACCATCGAAAGATTCAAAGCAACTGAAGCCACCAAAAGTTTCGAAAGAGTCAAAGCCATTGAAGGACTCGAAAGAAGACAAGAAGGCAGTGAAAGAAGATAAGAAGGCGGCTGCGAAAGATTCGAAAGAACAGAAGAAGGCACTGAAGGACTCGAAAGAACTAAAAAAGGCGTTGAAGGACTCGAAAGAACAGGGGTCGCAGAAGGATTCAGATGAACTTAAACCAAAGAGCAACAAGCGCGTGACGTTCGCCGAGGTGGAGCCCGAGAAGGAACTCAAGGCCTCCAACAGCGACTGGCATCCGACCTCCGAGTATCACAGCGTGTACCCGGAGCACAACTCATGGAGCAGCAGCTTCATGATCTTTGAGGATGAGAACAGTTACTGGAACTAGAGATCTCTAGACCTGCCAAAAAAAAAAAGCAGCCCGGTGAAGAGTCTTCAGTTAGTTAGAAGTAGCTAGGAGGCCATTTAAACTCTCTTGTTCTAGCTGTCCTCTATCGATTGTTCTGACTTGGGTCACCATGTAACATATTTCTCTAATTTACACCAGTAGATGATGAGTAATGTAGAAATCTGCAATGTGGGTTGGTGATGAAAATGGTGATGCTGGTAGAATTC                ]
[+] EMBL C26711               [                                                            GCTTTCCTCCTCCCCCTCCACTCCAGATTTTGCTCCCCTCGAGACCACCACCAAAAGCAGCAGCACCACC GAAAGAGGAAGCAAAGCAAAGCAAAGCAGGCGNGGTTTCAGTCTCCCAGGAATCCCCTTCCAAGAACTCCCACCCGATTCGAAGCGCTCGAGGAGGTTCTTTGCTCAATCAGAGTGGATCTTCTGCTGGGAGGATTGGGAAGAGCGNGGGAGAGATGGGGTCCGGATCTTTGCTCAAGGTTCTTGCCAAGAACTTCGATGTTCTTGCTGGGCCTTTTGGTTTGCACTAGCTTATCCGTTGTACGNTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL OSC31121             [                                                                                                                  AAGCAGCAGCACCACCAGAAAGAGGAAGCAAAGCAAAGCAAAGCAGGCGAGGTTTCAGTCTCCCAGGAATCCCCTTCCAAGAACTCCCACCCGATTCGAAGCGCTCGAGGAGGTTCTTTGCTCAATCAGAGTGGATCTTCTGCTGGGAGGATTGGGAAGAGCGGGGGAGAGATGGGGTCCGGATCTTTGCTCAAGGTTCTTGCCAAGAACTTCGATGTTCTTGCTGGGCC TTTGG TTGCACTAGCTTATCCGTTGTACGCTTCAGTTAAGGCAATAGAAACCAAATCCCCTGTGGATGATCAACAATGGCTCACATACTGGGTGATGTACTCATTAATAACACTGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AU082868             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CGAAAGAGTCAAAGCCATTGAAGGACTCGAAAGAAGACAAGNAGGCAGTGAAAGAAGATAAGAAGGCGGCTGCGAAAGATTCGAAAGAACAGAAGAAGGCACTGAAGGNCTCGAAAGAACTAAAAAAGGCGTTGAAGGACTCGAAAGAACAGGGGTCGCAGAAGGATTCAGATGAACTTAAACCAAAGAGCAACAAGCGCGTGACGTTCGCCGAGGTGGAGCCCGAGAAGGAACTCAAGGCCTCCAACAGCGACTGGCATCCGACCTCCGAGTATCACAGCGTGTACCCGGAGCACAACTCATGGAGCAGCAGCTTCATGATCTTTGAGGATGAGAACAGTTACTGGAACTAGAGATCTCTAGACCTGCCAAAAAAAAAAAGCAGCCCGGTGAAGAGTCTTCAGTTAGTTAGAAGTAGCTAGGAGGCCATTTAAACTCTCTTGTTCTAGCTGTCCTCTATCGATTGTTCTGACTTGGGTCACCATGTAACATATTTCTCTAATTTACACCAGTAGATGATGAGTAATGTAGAAATCTGCAATGTGGGTTGGTGATGAAAATGGTGATGCTGGTAGAATTCAGATTATATCAAAAAA]


>consensus_9513#0 ACCCGTCGTCTCGCCTTCGCCTCGCCTCGTCTGCTCCACCATCCACCACCACCACGCTAC GCTTTCCTCCTCCCCCTCCACTCCAGATTTTGCTCCCCTCGAGACCACCACCAAAAGCAG CAGCACCACCGAAAGAGGAAGCAAAGCAAAGCAAAGCAGGCGAGGTTTCAGTCTCCCAGG AATCCCCTTCCAAGAACTCCCACCCGATTCGAAGCGCTCGAGGAGGTTCTTTGCTCAATC AGAGTGGATCTTCTGCTGGGAGGATTGGGAAGAGCGGGGGAGAGATGGGGTCCGGATCTT TGCTCAAGGTTCTTGCCAAGAACTTCGATGTTCTTGCTGGGCCTTTGGTTGCACTAGCTT ATCCGTTGTACGCTTCAGTTAAGGCAATAGAAACCAAATCCCCTGTGGATGATCAACAAT GGCTCACATACTGGGTGATGTACTCATTAATAACACTGTTTGAGCTCACATTTGCATCAA TTATTCAGTGGCTTCCTTTTTGGCCATCTATGAAATTGATCTTTATTTGCTGGCTTGTCT TGCCATACTTCAATGGTGCAGCCTTTGTGTACCAAAATTATGTGAGACCTATGTTTGTGA AGCACCAAATGGTTAACATTTGGTATGTCCCTCAGAAAAAGGGCCTTTTCGGTAAATCCG ATGACTTCCTCACAGCACTTGATAAATTTATTGAAGAAAATGGACCTGAAGCTCTGAAGA AACTGACTAACAAGGCTGGCAAATCATCTAAACAGTCTGGCAAATCATGGAAAGATTCAA AGTCATCAAAGGAGTCAAAAGATTCGAAGTCATCAAAGGAATCCAAAGAACCAAAACCAT CGAAAGATTCAAAGCAACTGAAGCCACCAAAAGTTTCGAAAGAGTCAAAGCCATTGAAGG ACTCGAAAGAAGACAAGAAGGCAGTGAAAGAAGATAAGAAGGCGGCTGCGAAAGATTCGA AAGAACAGAAGAAGGCACTGAAGGACTCGAAAGAACTAAAAAAGGCGTTGAAGGACTCGA AAGAACAGGGGTCGCAGAAGGATTCAGATGAACTTAAACCAAAGAGCAACAAGCGCGTGA CGTTCGCCGAGGTGGAGCCCGAGAAGGAACTCAAGGCCTCCAACAGCGACTGGCATCCGA CCTCCGAGTATCACAGCGTGTACCCGGAGCACAACTCATGGAGCAGCAGCTTCATGATCT TTGAGGATGAGAACAGTTACTGGAACTAGAGATCTCTAGACCTGCCAAAAAAAAAAAGCA GCCCGGTGAAGAGTCTTCAGTTAGTTAGAAGTAGCTAGGAGGCCATTTAAACTCTCTTGT TCTAGCTGTCCTCTATCGATTGTTCTGACTTGGGTCACCATGTAACATATTTCTCTAATT TACACCAGTAGATGATGAGTAATGTAGAAATCTGCAATGTGGGTTGGTGATGAAAATGGT GATGCTGGTAGAATTCAGATTATATCAAAAAA



consensusID : consensus_9513#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 212
fasta sequence
                              [CAGGGGTTGCAGAAGGATTCAGATGAACTTAAACCAAAGAGCACCAAGGGGGTGACGTTTCCCAAGGTGGAGCCCGAAAAGGAACTCAAGGCCTCCAACAGGGATTGGCATCCGACCTCCGAGTATCACAGGGTGTACCCGGAGCCCAATTCATGGAGCAGCAGTTTTATGATTTTTGAGGATGAGAACAGTTTCTGGAACTAAAGATTTTT]

[-] EMBL BI306241             [CAGGGGTTGCAGAAGGATTCAGATGAACTTAAACCAAAGAGCACCAAGGGGGTGACGTTTCCCAAGGTGGAGCCCGAAAAGGAACTCAAGGCCTCCAACAGGGATTGGCATCCGACCTCCGAGTATCACAGGGTGTACCCGGAGCCCAATTCATGGAGCAGCAGTTTTATGATTTTTGAGGATGAGAACAGTTTCTGGAACTAAAGATTTTT]


>consensus_9513#1 CAGGGGTTGCAGAAGGATTCAGATGAACTTAAACCAAAGAGCACCAAGGGGGTGACGTTT CCCAAGGTGGAGCCCGAAAAGGAACTCAAGGCCTCCAACAGGGATTGGCATCCGACCTCC GAGTATCACAGGGTGTACCCGGAGCCCAATTCATGGAGCAGCAGTTTTATGATTTTTGAG GATGAGAACAGTTTCTGGAACTAAAGATTTTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9513#0      ACCCGTCGTCTCGCCTTCGCCTCGCCTCGTCTGCTCCACCATCCACCACCACCACGCTAC 60
consensus_9513#1      ------------------------------------------------------------
                                                                                  

consensus_9513#0      GCTTTCCTCCTCCCCCTCCACTCCAGATTTTGCTCCCCTCGAGACCACCACCAAAAGCAG 120
consensus_9513#1      ------------------------------------------------------------
                                                                                  

consensus_9513#0      CAGCACCACCGAAAGAGGAAGCAAAGCAAAGCAAAGCAGGCGAGGTTTCAGTCTCCCAGG 180
consensus_9513#1      ------------------------------------------------------------
                                                                                  

consensus_9513#0      AATCCCCTTCCAAGAACTCCCACCCGATTCGAAGCGCTCGAGGAGGTTCTTTGCTCAATC 240
consensus_9513#1      ------------------------------------------------------------
                                                                                  

consensus_9513#0      AGAGTGGATCTTCTGCTGGGAGGATTGGGAAGAGCGGGGGAGAGATGGGGTCCGGATCTT 300
consensus_9513#1      ------------------------------------------------------------
                                                                                  

consensus_9513#0      TGCTCAAGGTTCTTGCCAAGAACTTCGATGTTCTTGCTGGGCCTTTGGTTGCACTAGCTT 360
consensus_9513#1      ------------------------------------------------------------
                                                                                  

consensus_9513#0      ATCCGTTGTACGCTTCAGTTAAGGCAATAGAAACCAAATCCCCTGTGGATGATCAACAAT 420
consensus_9513#1      ------------------------------------------------------------
                                                                                  

consensus_9513#0      GGCTCACATACTGGGTGATGTACTCATTAATAACACTGTTTGAGCTCACATTTGCATCAA 480
consensus_9513#1      ------------------------------------------------------------
                                                                                  

consensus_9513#0      TTATTCAGTGGCTTCCTTTTTGGCCATCTATGAAATTGATCTTTATTTGCTGGCTTGTCT 540
consensus_9513#1      ------------------------------------------------------------
                                                                                  

consensus_9513#0      TGCCATACTTCAATGGTGCAGCCTTTGTGTACCAAAATTATGTGAGACCTATGTTTGTGA 600
consensus_9513#1      ------------------------------------------------------------
                                                                                  

consensus_9513#0      AGCACCAAATGGTTAACATTTGGTATGTCCCTCAGAAAAAGGGCCTTTTCGGTAAATCCG 660
consensus_9513#1      ------------------------------------------------------------
                                                                                  

consensus_9513#0      ATGACTTCCTCACAGCACTTGATAAATTTATTGAAGAAAATGGACCTGAAGCTCTGAAGA 720
consensus_9513#1      ------------------------------------------------------------
                                                                                  

consensus_9513#0      AACTGACTAACAAGGCTGGCAAATCATCTAAACAGTCTGGCAAATCATGGAAAGATTCAA 780
consensus_9513#1      ------------------------------------------------------------
                                                                                  

consensus_9513#0      AGTCATCAAAGGAGTCAAAAGATTCGAAGTCATCAAAGGAATCCAAAGAACCAAAACCAT 840
consensus_9513#1      ------------------------------------------------------------
                                                                                  

consensus_9513#0      CGAAAGATTCAAAGCAACTGAAGCCACCAAAAGTTTCGAAAGAGTCAAAGCCATTGAAGG 900
consensus_9513#1      ------------------------------------------------------------
                                                                                  

consensus_9513#0      ACTCGAAAGAAGACAAGAAGGCAGTGAAAGAAGATAAGAAGGCGGCTGCGAAAGATTCGA 960
consensus_9513#1      ------------------------------------------------------------
                                                                                  

consensus_9513#0      AAGAACAGAAGAAGGCACTGAAGGACTCGAAAGAACTAAAAAAGGCGTTGAAGGACTCGA 1020
consensus_9513#1      ------------------------------------------------------------
                                                                                  

consensus_9513#0      AAGAACAGGGGTCGCAGAAGGATTCAGATGAACTTAAACCAAAGAGCAACAAGCGCGTGA 1080
consensus_9513#1      -----CAGGGGTTGCAGAAGGATTCAGATGAACTTAAACCAAAGAGCACCAAGGGGGTGA 55
                           ******* *********************************** **** * ****

consensus_9513#0      CGTTCGCCGAGGTGGAGCCCGAGAAGGAACTCAAGGCCTCCAACAGCGACTGGCATCCGA 1140
consensus_9513#1      CGTTTCCCAAGGTGGAGCCCGAAAAGGAACTCAAGGCCTCCAACAGGGATTGGCATCCGA 115
                      ****  ** ************* *********************** ** **********

consensus_9513#0      CCTCCGAGTATCACAGCGTGTACCCGGAGCACAACTCATGGAGCAGCAGCTTCATGATCT 1200
consensus_9513#1      CCTCCGAGTATCACAGGGTGTACCCGGAGCCCAATTCATGGAGCAGCAGTTTTATGATTT 175
                      **************** ************* *** ************** ** ***** *

consensus_9513#0      TTGAGGATGAGAACAGTTACTGGAACTAGAGATCTCTAGACCTGCCAAAAAAAAAAAGCA 1260
consensus_9513#1      TTGAGGATGAGAACAGTTTCTGGAACTAAAGATTTTT----------------------- 212
                      ****************** ********* **** * *                       

consensus_9513#0      GCCCGGTGAAGAGTCTTCAGTTAGTTAGAAGTAGCTAGGAGGCCATTTAAACTCTCTTGT 1320
consensus_9513#1      ------------------------------------------------------------
                                                                                  

consensus_9513#0      TCTAGCTGTCCTCTATCGATTGTTCTGACTTGGGTCACCATGTAACATATTTCTCTAATT 1380
consensus_9513#1      ------------------------------------------------------------
                                                                                  

consensus_9513#0      TACACCAGTAGATGATGAGTAATGTAGAAATCTGCAATGTGGGTTGGTGATGAAAATGGT 1440
consensus_9513#1      ------------------------------------------------------------
                                                                                  

consensus_9513#0      GATGCTGGTAGAATTCAGATTATATCAAAAAA 1472
consensus_9513#1      --------------------------------
                                                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)