These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9513#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1472 fasta sequence [ACCCGTCGTCTCGCCTTCGCCTCGCCTCGTCTGCTCCACCATCCACCACCACCACGCTACGCTTTCCTCCTCCCCCTCCACTCCAGATTTTGCTCCCCTCGAGACCACCACCAAAAGCAGCAGCACCACC-GAAAGAGGAAGCAAAGCAAAGCAAAGCAGGCGAGGTTTCAGTCTCCCAGGAATCCCCTTCCAAGAACTCCCACCCGATTCGAAGCGCTCGAGGAGGTTCTTTGCTCAATCAGAGTGGATCTTCTGCTGGGAGGATTGGGAAGAGCGGGGGAGAGATGGGGTCCGGATCTTTGCTCAAGGTTCTTGCCAAGAACTTCGATGTTCTTGCTGGGCC-TTTGG-TTGCACTAGCTTATCCGTTGTACGCTTCAGTTAAGGCAATAGAAACCAAATCCCCTGTGGATGATCAACAATGGCTCACATACTGGGTGATGTACTCATTAATAACACTGTTTGAGCTCACATTTGCATCAATTATTCAGTGGCTTCCTTTTTGGCCATCTATGAAATTGATCTTTATTTGCTGGCTTGTCTTGCCATACTTCAATGGTGCAGCCTTTGTGTACCAAAATTATGTGAGACCTATGTTTGTGAAGCACCAAATGGTTAACATTTGGTATGTCCCTCAGAAAAAGGGCCTTTTCGGTAAATCCGATGACTTCCTCACAGCACTTGATAAATTTATTGAAGAAAATGGACCTGAAGCTCTGAAGAAACTGACTAACAAGGCTGGCAAATCATCTAAACAGTCTGGCAAATCATGGAAAGATTCAAAGTCATCAAAGGAGTCAAAAGATTCGAAGTCATCAAAGGAATCCAAAGAACCAAAACCATCGAAAGATTCAAAGCAACTGAAGCCACCAAAAGTTTCGAAAGAGTCAAAGCCATTGAAGGACTCGAAAGAAGACAAGAAGGCAGTGAAAGAAGATAAGAAGGCGGCTGCGAAAGATTCGAAAGAACAGAAGAAGGCACTGAAGGACTCGAAAGAACTAAAAAAGGCGTTGAAGGACTCGAAAGAACAGGGGTCGCAGAAGGATTCAGATGAACTTAAACCAAAGAGCAACAAGCGCGTGACGTTCGCCGAGGTGGAGCCCGAGAAGGAACTCAAGGCCTCCAACAGCGACTGGCATCCGACCTCCGAGTATCACAGCGTGTACCCGGAGCACAACTCATGGAGCAGCAGCTTCATGATCTTTGAGGATGAGAACAGTTACTGGAACTAGAGATCTCTAGACCTGCCAAAAAAAAAAAGCAGCCCGGTGAAGAGTCTTCAGTTAGTTAGAAGTAGCTAGGAGGCCATTTAAACTCTCTTGTTCTAGCTGTCCTCTATCGATTGTTCTGACTTGGGTCACCATGTAACATATTTCTCTAATTTACACCAGTAGATGATGAGTAATGTAGAAATCTGCAATGTGGGTTGGTGATGAAAATGGTGATGCTGGTAGAATTCAGATTATATCAAAAAA] [+] EMBL C28427 [ACCCGTCGTCTCGCCTTCGCCTCGCCTCGTCTGCTCCACCATCCACCACCACCACGCTACGCTTTCCTCCTCCCNCTCCACTCCAGATTTTGCTCCCCTCGAGACCACCACCAAAAGCAGNAGCACCACC GAAAGAGGAAGCAAAGCAAAGCAAAGCAGGCGAGGTTTCAGTCTCCCAGGAATCCCCTTCCAAGAACTCCCACCCGATTCGAAGCGCTCGAGGAGGTTCTTTGCTCAATCAGAGTGGATCTTCTGCTGGGAGGATTGGGAAGAGCGTGGGAGAGATGGGGTCCGNATCTTTGCTCAAGGTTCTTGCCAAGAACTTCGATGTTCTTGCTGGGCC TTTGG TTG ANTAGCTTATNCGTTGTACG TTTAGTTAA GCAATAG AACCAAAT CCCTGTGGATGATC ACAATGGCTCACATAtt ] [+] EMBL AK103473 [ CCACCACCACGCTACGCTTTCCTCCTCCCCCTCCACTCCAGATTTTGCTCCCCTCGAGACCACCACCAAAAGCAGCAGCACCACC GAAAGAGGAAGCAAAGCAAAGCAAAGCAGGCGAGGTTTCAGTCTCCCAGGAATCCCCTTCCAAGAACTCCCACCCGATTCGAAGCGCTCGAGGAGGTTCTTTGCTCAATCAGAGTGGATCTTCTGCTGGGAGGATTGGGAAGAGCGGGGGAGAGATGGGGTCCGGATCTTTGCTCAAGGTTCTTGCCAAGAACTTCGATGTTCTTGCTGGGCC TTTGG TTGCACTAGCTTATCCGTTGTACGCTTCAGTTAAGGCAATAGAAACCAAATCCCCTGTGGATGATCAACAATGGCTCACATACTGGGTGATGTACTCATTAATAACACTGTTTGAGCTCACATTTGCATCAATTATTCAGTGGCTTCCTTTTTGGCCATCTATGAAATTGATCTTTATTTGCTGGCTTGTCTTGCCATACTTCAATGGTGCAGCCTTTGTGTACCAAAATTATGTGAGACCTATGTTTGTGAAGCACCAAATGGTTAACATTTGGTATGTCCCTCAGAAAAAGGGCCTTTTCGGTAAATCCGATGACTTCCTCACAGCACTTGATAAATTTATTGAAGAAAATGGACCTGAAGCTCTGAAGAAACTGACTAACAAGGCTGGCAAATCATCTAAACAGTCTGGCAAATCATGGAAAGATTCAAAGTCATCAAAGGAGTCAAAAGATTCGAAGTCATCAAAGGAATCCAAAGAACCAAAACCATCGAAAGATTCAAAGCAACTGAAGCCACCAAAAGTTTCGAAAGAGTCAAAGCCATTGAAGGACTCGAAAGAAGACAAGAAGGCAGTGAAAGAAGATAAGAAGGCGGCTGCGAAAGATTCGAAAGAACAGAAGAAGGCACTGAAGGACTCGAAAGAACTAAAAAAGGCGTTGAAGGACTCGAAAGAACAGGGGTCGCAGAAGGATTCAGATGAACTTAAACCAAAGAGCAACAAGCGCGTGACGTTCGCCGAGGTGGAGCCCGAGAAGGAACTCAAGGCCTCCAACAGCGACTGGCATCCGACCTCCGAGTATCACAGCGTGTACCCGGAGCACAACTCATGGAGCAGCAGCTTCATGATCTTTGAGGATGAGAACAGTTACTGGAACTAGAGATCTCTAGACCTGCCAAAAAAAAAAAGCAGCCCGGTGAAGAGTCTTCAGTTAGTTAGAAGTAGCTAGGAGGCCATTTAAACTCTCTTGTTCTAGCTGTCCTCTATCGATTGTTCTGACTTGGGTCACCATGTAACATATTTCTCTAATTTACACCAGTAGATGATGAGTAATGTAGAAATCTGCAATGTGGGTTGGTGATGAAAATGGTGATGCTGGTAGAATTC ] [+] EMBL C26711 [ GCTTTCCTCCTCCCCCTCCACTCCAGATTTTGCTCCCCTCGAGACCACCACCAAAAGCAGCAGCACCACC GAAAGAGGAAGCAAAGCAAAGCAAAGCAGGCGNGGTTTCAGTCTCCCAGGAATCCCCTTCCAAGAACTCCCACCCGATTCGAAGCGCTCGAGGAGGTTCTTTGCTCAATCAGAGTGGATCTTCTGCTGGGAGGATTGGGAAGAGCGNGGGAGAGATGGGGTCCGGATCTTTGCTCAAGGTTCTTGCCAAGAACTTCGATGTTCTTGCTGGGCCTTTTGGTTTGCACTAGCTTATCCGTTGTACGNTT ] [+] EMBL OSC31121 [ AAGCAGCAGCACCACCAGAAAGAGGAAGCAAAGCAAAGCAAAGCAGGCGAGGTTTCAGTCTCCCAGGAATCCCCTTCCAAGAACTCCCACCCGATTCGAAGCGCTCGAGGAGGTTCTTTGCTCAATCAGAGTGGATCTTCTGCTGGGAGGATTGGGAAGAGCGGGGGAGAGATGGGGTCCGGATCTTTGCTCAAGGTTCTTGCCAAGAACTTCGATGTTCTTGCTGGGCC TTTGG TTGCACTAGCTTATCCGTTGTACGCTTCAGTTAAGGCAATAGAAACCAAATCCCCTGTGGATGATCAACAATGGCTCACATACTGGGTGATGTACTCATTAATAACACTGTT ] [+] EMBL AU082868 [ CGAAAGAGTCAAAGCCATTGAAGGACTCGAAAGAAGACAAGNAGGCAGTGAAAGAAGATAAGAAGGCGGCTGCGAAAGATTCGAAAGAACAGAAGAAGGCACTGAAGGNCTCGAAAGAACTAAAAAAGGCGTTGAAGGACTCGAAAGAACAGGGGTCGCAGAAGGATTCAGATGAACTTAAACCAAAGAGCAACAAGCGCGTGACGTTCGCCGAGGTGGAGCCCGAGAAGGAACTCAAGGCCTCCAACAGCGACTGGCATCCGACCTCCGAGTATCACAGCGTGTACCCGGAGCACAACTCATGGAGCAGCAGCTTCATGATCTTTGAGGATGAGAACAGTTACTGGAACTAGAGATCTCTAGACCTGCCAAAAAAAAAAAGCAGCCCGGTGAAGAGTCTTCAGTTAGTTAGAAGTAGCTAGGAGGCCATTTAAACTCTCTTGTTCTAGCTGTCCTCTATCGATTGTTCTGACTTGGGTCACCATGTAACATATTTCTCTAATTTACACCAGTAGATGATGAGTAATGTAGAAATCTGCAATGTGGGTTGGTGATGAAAATGGTGATGCTGGTAGAATTCAGATTATATCAAAAAA] consensusID : consensus_9513#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 212 fasta sequence [CAGGGGTTGCAGAAGGATTCAGATGAACTTAAACCAAAGAGCACCAAGGGGGTGACGTTTCCCAAGGTGGAGCCCGAAAAGGAACTCAAGGCCTCCAACAGGGATTGGCATCCGACCTCCGAGTATCACAGGGTGTACCCGGAGCCCAATTCATGGAGCAGCAGTTTTATGATTTTTGAGGATGAGAACAGTTTCTGGAACTAAAGATTTTT] [-] EMBL BI306241 [CAGGGGTTGCAGAAGGATTCAGATGAACTTAAACCAAAGAGCACCAAGGGGGTGACGTTTCCCAAGGTGGAGCCCGAAAAGGAACTCAAGGCCTCCAACAGGGATTGGCATCCGACCTCCGAGTATCACAGGGTGTACCCGGAGCCCAATTCATGGAGCAGCAGTTTTATGATTTTTGAGGATGAGAACAGTTTCTGGAACTAAAGATTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9513#0 ACCCGTCGTCTCGCCTTCGCCTCGCCTCGTCTGCTCCACCATCCACCACCACCACGCTAC 60 consensus_9513#1 ------------------------------------------------------------ consensus_9513#0 GCTTTCCTCCTCCCCCTCCACTCCAGATTTTGCTCCCCTCGAGACCACCACCAAAAGCAG 120 consensus_9513#1 ------------------------------------------------------------ consensus_9513#0 CAGCACCACCGAAAGAGGAAGCAAAGCAAAGCAAAGCAGGCGAGGTTTCAGTCTCCCAGG 180 consensus_9513#1 ------------------------------------------------------------ consensus_9513#0 AATCCCCTTCCAAGAACTCCCACCCGATTCGAAGCGCTCGAGGAGGTTCTTTGCTCAATC 240 consensus_9513#1 ------------------------------------------------------------ consensus_9513#0 AGAGTGGATCTTCTGCTGGGAGGATTGGGAAGAGCGGGGGAGAGATGGGGTCCGGATCTT 300 consensus_9513#1 ------------------------------------------------------------ consensus_9513#0 TGCTCAAGGTTCTTGCCAAGAACTTCGATGTTCTTGCTGGGCCTTTGGTTGCACTAGCTT 360 consensus_9513#1 ------------------------------------------------------------ consensus_9513#0 ATCCGTTGTACGCTTCAGTTAAGGCAATAGAAACCAAATCCCCTGTGGATGATCAACAAT 420 consensus_9513#1 ------------------------------------------------------------ consensus_9513#0 GGCTCACATACTGGGTGATGTACTCATTAATAACACTGTTTGAGCTCACATTTGCATCAA 480 consensus_9513#1 ------------------------------------------------------------ consensus_9513#0 TTATTCAGTGGCTTCCTTTTTGGCCATCTATGAAATTGATCTTTATTTGCTGGCTTGTCT 540 consensus_9513#1 ------------------------------------------------------------ consensus_9513#0 TGCCATACTTCAATGGTGCAGCCTTTGTGTACCAAAATTATGTGAGACCTATGTTTGTGA 600 consensus_9513#1 ------------------------------------------------------------ consensus_9513#0 AGCACCAAATGGTTAACATTTGGTATGTCCCTCAGAAAAAGGGCCTTTTCGGTAAATCCG 660 consensus_9513#1 ------------------------------------------------------------ consensus_9513#0 ATGACTTCCTCACAGCACTTGATAAATTTATTGAAGAAAATGGACCTGAAGCTCTGAAGA 720 consensus_9513#1 ------------------------------------------------------------ consensus_9513#0 AACTGACTAACAAGGCTGGCAAATCATCTAAACAGTCTGGCAAATCATGGAAAGATTCAA 780 consensus_9513#1 ------------------------------------------------------------ consensus_9513#0 AGTCATCAAAGGAGTCAAAAGATTCGAAGTCATCAAAGGAATCCAAAGAACCAAAACCAT 840 consensus_9513#1 ------------------------------------------------------------ consensus_9513#0 CGAAAGATTCAAAGCAACTGAAGCCACCAAAAGTTTCGAAAGAGTCAAAGCCATTGAAGG 900 consensus_9513#1 ------------------------------------------------------------ consensus_9513#0 ACTCGAAAGAAGACAAGAAGGCAGTGAAAGAAGATAAGAAGGCGGCTGCGAAAGATTCGA 960 consensus_9513#1 ------------------------------------------------------------ consensus_9513#0 AAGAACAGAAGAAGGCACTGAAGGACTCGAAAGAACTAAAAAAGGCGTTGAAGGACTCGA 1020 consensus_9513#1 ------------------------------------------------------------ consensus_9513#0 AAGAACAGGGGTCGCAGAAGGATTCAGATGAACTTAAACCAAAGAGCAACAAGCGCGTGA 1080 consensus_9513#1 -----CAGGGGTTGCAGAAGGATTCAGATGAACTTAAACCAAAGAGCACCAAGGGGGTGA 55 ******* *********************************** **** * **** consensus_9513#0 CGTTCGCCGAGGTGGAGCCCGAGAAGGAACTCAAGGCCTCCAACAGCGACTGGCATCCGA 1140 consensus_9513#1 CGTTTCCCAAGGTGGAGCCCGAAAAGGAACTCAAGGCCTCCAACAGGGATTGGCATCCGA 115 **** ** ************* *********************** ** ********** consensus_9513#0 CCTCCGAGTATCACAGCGTGTACCCGGAGCACAACTCATGGAGCAGCAGCTTCATGATCT 1200 consensus_9513#1 CCTCCGAGTATCACAGGGTGTACCCGGAGCCCAATTCATGGAGCAGCAGTTTTATGATTT 175 **************** ************* *** ************** ** ***** * consensus_9513#0 TTGAGGATGAGAACAGTTACTGGAACTAGAGATCTCTAGACCTGCCAAAAAAAAAAAGCA 1260 consensus_9513#1 TTGAGGATGAGAACAGTTTCTGGAACTAAAGATTTTT----------------------- 212 ****************** ********* **** * * consensus_9513#0 GCCCGGTGAAGAGTCTTCAGTTAGTTAGAAGTAGCTAGGAGGCCATTTAAACTCTCTTGT 1320 consensus_9513#1 ------------------------------------------------------------ consensus_9513#0 TCTAGCTGTCCTCTATCGATTGTTCTGACTTGGGTCACCATGTAACATATTTCTCTAATT 1380 consensus_9513#1 ------------------------------------------------------------ consensus_9513#0 TACACCAGTAGATGATGAGTAATGTAGAAATCTGCAATGTGGGTTGGTGATGAAAATGGT 1440 consensus_9513#1 ------------------------------------------------------------ consensus_9513#0 GATGCTGGTAGAATTCAGATTATATCAAAAAA 1472 consensus_9513#1 -------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||