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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9513#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1472 fasta sequence
[ACCCGTCGTCTCGCCTTCGCCTCGCCTCGTCTGCTCCACCATCCACCACCACCACGCTACGCTTTCCTCCTCCCCCTCCACTCCAGATTTTGCTCCCCTCGAGACCACCACCAAAAGCAGCAGCACCACC-GAAAGAGGAAGCAAAGCAAAGCAAAGCAGGCGAGGTTTCAGTCTCCCAGGAATCCCCTTCCAAGAACTCCCACCCGATTCGAAGCGCTCGAGGAGGTTCTTTGCTCAATCAGAGTGGATCTTCTGCTGGGAGGATTGGGAAGAGCGGGGGAGAGATGGGGTCCGGATCTTTGCTCAAGGTTCTTGCCAAGAACTTCGATGTTCTTGCTGGGCC-TTTGG-TTGCACTAGCTTATCCGTTGTACGCTTCAGTTAAGGCAATAGAAACCAAATCCCCTGTGGATGATCAACAATGGCTCACATACTGGGTGATGTACTCATTAATAACACTGTTTGAGCTCACATTTGCATCAATTATTCAGTGGCTTCCTTTTTGGCCATCTATGAAATTGATCTTTATTTGCTGGCTTGTCTTGCCATACTTCAATGGTGCAGCCTTTGTGTACCAAAATTATGTGAGACCTATGTTTGTGAAGCACCAAATGGTTAACATTTGGTATGTCCCTCAGAAAAAGGGCCTTTTCGGTAAATCCGATGACTTCCTCACAGCACTTGATAAATTTATTGAAGAAAATGGACCTGAAGCTCTGAAGAAACTGACTAACAAGGCTGGCAAATCATCTAAACAGTCTGGCAAATCATGGAAAGATTCAAAGTCATCAAAGGAGTCAAAAGATTCGAAGTCATCAAAGGAATCCAAAGAACCAAAACCATCGAAAGATTCAAAGCAACTGAAGCCACCAAAAGTTTCGAAAGAGTCAAAGCCATTGAAGGACTCGAAAGAAGACAAGAAGGCAGTGAAAGAAGATAAGAAGGCGGCTGCGAAAGATTCGAAAGAACAGAAGAAGGCACTGAAGGACTCGAAAGAACTAAAAAAGGCGTTGAAGGACTCGAAAGAACAGGGGTCGCAGAAGGATTCAGATGAACTTAAACCAAAGAGCAACAAGCGCGTGACGTTCGCCGAGGTGGAGCCCGAGAAGGAACTCAAGGCCTCCAACAGCGACTGGCATCCGACCTCCGAGTATCACAGCGTGTACCCGGAGCACAACTCATGGAGCAGCAGCTTCATGATCTTTGAGGATGAGAACAGTTACTGGAACTAGAGATCTCTAGACCTGCCAAAAAAAAAAAGCAGCCCGGTGAAGAGTCTTCAGTTAGTTAGAAGTAGCTAGGAGGCCATTTAAACTCTCTTGTTCTAGCTGTCCTCTATCGATTGTTCTGACTTGGGTCACCATGTAACATATTTCTCTAATTTACACCAGTAGATGATGAGTAATGTAGAAATCTGCAATGTGGGTTGGTGATGAAAATGGTGATGCTGGTAGAATTCAGATTATATCAAAAAA]
[+] EMBL C28427 [ACCCGTCGTCTCGCCTTCGCCTCGCCTCGTCTGCTCCACCATCCACCACCACCACGCTACGCTTTCCTCCTCCCNCTCCACTCCAGATTTTGCTCCCCTCGAGACCACCACCAAAAGCAGNAGCACCACC GAAAGAGGAAGCAAAGCAAAGCAAAGCAGGCGAGGTTTCAGTCTCCCAGGAATCCCCTTCCAAGAACTCCCACCCGATTCGAAGCGCTCGAGGAGGTTCTTTGCTCAATCAGAGTGGATCTTCTGCTGGGAGGATTGGGAAGAGCGTGGGAGAGATGGGGTCCGNATCTTTGCTCAAGGTTCTTGCCAAGAACTTCGATGTTCTTGCTGGGCC TTTGG TTG ANTAGCTTATNCGTTGTACG TTTAGTTAA GCAATAG AACCAAAT CCCTGTGGATGATC ACAATGGCTCACATAtt ]
[+] EMBL AK103473 [ CCACCACCACGCTACGCTTTCCTCCTCCCCCTCCACTCCAGATTTTGCTCCCCTCGAGACCACCACCAAAAGCAGCAGCACCACC GAAAGAGGAAGCAAAGCAAAGCAAAGCAGGCGAGGTTTCAGTCTCCCAGGAATCCCCTTCCAAGAACTCCCACCCGATTCGAAGCGCTCGAGGAGGTTCTTTGCTCAATCAGAGTGGATCTTCTGCTGGGAGGATTGGGAAGAGCGGGGGAGAGATGGGGTCCGGATCTTTGCTCAAGGTTCTTGCCAAGAACTTCGATGTTCTTGCTGGGCC TTTGG TTGCACTAGCTTATCCGTTGTACGCTTCAGTTAAGGCAATAGAAACCAAATCCCCTGTGGATGATCAACAATGGCTCACATACTGGGTGATGTACTCATTAATAACACTGTTTGAGCTCACATTTGCATCAATTATTCAGTGGCTTCCTTTTTGGCCATCTATGAAATTGATCTTTATTTGCTGGCTTGTCTTGCCATACTTCAATGGTGCAGCCTTTGTGTACCAAAATTATGTGAGACCTATGTTTGTGAAGCACCAAATGGTTAACATTTGGTATGTCCCTCAGAAAAAGGGCCTTTTCGGTAAATCCGATGACTTCCTCACAGCACTTGATAAATTTATTGAAGAAAATGGACCTGAAGCTCTGAAGAAACTGACTAACAAGGCTGGCAAATCATCTAAACAGTCTGGCAAATCATGGAAAGATTCAAAGTCATCAAAGGAGTCAAAAGATTCGAAGTCATCAAAGGAATCCAAAGAACCAAAACCATCGAAAGATTCAAAGCAACTGAAGCCACCAAAAGTTTCGAAAGAGTCAAAGCCATTGAAGGACTCGAAAGAAGACAAGAAGGCAGTGAAAGAAGATAAGAAGGCGGCTGCGAAAGATTCGAAAGAACAGAAGAAGGCACTGAAGGACTCGAAAGAACTAAAAAAGGCGTTGAAGGACTCGAAAGAACAGGGGTCGCAGAAGGATTCAGATGAACTTAAACCAAAGAGCAACAAGCGCGTGACGTTCGCCGAGGTGGAGCCCGAGAAGGAACTCAAGGCCTCCAACAGCGACTGGCATCCGACCTCCGAGTATCACAGCGTGTACCCGGAGCACAACTCATGGAGCAGCAGCTTCATGATCTTTGAGGATGAGAACAGTTACTGGAACTAGAGATCTCTAGACCTGCCAAAAAAAAAAAGCAGCCCGGTGAAGAGTCTTCAGTTAGTTAGAAGTAGCTAGGAGGCCATTTAAACTCTCTTGTTCTAGCTGTCCTCTATCGATTGTTCTGACTTGGGTCACCATGTAACATATTTCTCTAATTTACACCAGTAGATGATGAGTAATGTAGAAATCTGCAATGTGGGTTGGTGATGAAAATGGTGATGCTGGTAGAATTC ]
[+] EMBL C26711 [ GCTTTCCTCCTCCCCCTCCACTCCAGATTTTGCTCCCCTCGAGACCACCACCAAAAGCAGCAGCACCACC GAAAGAGGAAGCAAAGCAAAGCAAAGCAGGCGNGGTTTCAGTCTCCCAGGAATCCCCTTCCAAGAACTCCCACCCGATTCGAAGCGCTCGAGGAGGTTCTTTGCTCAATCAGAGTGGATCTTCTGCTGGGAGGATTGGGAAGAGCGNGGGAGAGATGGGGTCCGGATCTTTGCTCAAGGTTCTTGCCAAGAACTTCGATGTTCTTGCTGGGCCTTTTGGTTTGCACTAGCTTATCCGTTGTACGNTT ]
[+] EMBL OSC31121 [ AAGCAGCAGCACCACCAGAAAGAGGAAGCAAAGCAAAGCAAAGCAGGCGAGGTTTCAGTCTCCCAGGAATCCCCTTCCAAGAACTCCCACCCGATTCGAAGCGCTCGAGGAGGTTCTTTGCTCAATCAGAGTGGATCTTCTGCTGGGAGGATTGGGAAGAGCGGGGGAGAGATGGGGTCCGGATCTTTGCTCAAGGTTCTTGCCAAGAACTTCGATGTTCTTGCTGGGCC TTTGG TTGCACTAGCTTATCCGTTGTACGCTTCAGTTAAGGCAATAGAAACCAAATCCCCTGTGGATGATCAACAATGGCTCACATACTGGGTGATGTACTCATTAATAACACTGTT ]
[+] EMBL AU082868 [ CGAAAGAGTCAAAGCCATTGAAGGACTCGAAAGAAGACAAGNAGGCAGTGAAAGAAGATAAGAAGGCGGCTGCGAAAGATTCGAAAGAACAGAAGAAGGCACTGAAGGNCTCGAAAGAACTAAAAAAGGCGTTGAAGGACTCGAAAGAACAGGGGTCGCAGAAGGATTCAGATGAACTTAAACCAAAGAGCAACAAGCGCGTGACGTTCGCCGAGGTGGAGCCCGAGAAGGAACTCAAGGCCTCCAACAGCGACTGGCATCCGACCTCCGAGTATCACAGCGTGTACCCGGAGCACAACTCATGGAGCAGCAGCTTCATGATCTTTGAGGATGAGAACAGTTACTGGAACTAGAGATCTCTAGACCTGCCAAAAAAAAAAAGCAGCCCGGTGAAGAGTCTTCAGTTAGTTAGAAGTAGCTAGGAGGCCATTTAAACTCTCTTGTTCTAGCTGTCCTCTATCGATTGTTCTGACTTGGGTCACCATGTAACATATTTCTCTAATTTACACCAGTAGATGATGAGTAATGTAGAAATCTGCAATGTGGGTTGGTGATGAAAATGGTGATGCTGGTAGAATTCAGATTATATCAAAAAA]
consensusID : consensus_9513#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 212 fasta sequence
[CAGGGGTTGCAGAAGGATTCAGATGAACTTAAACCAAAGAGCACCAAGGGGGTGACGTTTCCCAAGGTGGAGCCCGAAAAGGAACTCAAGGCCTCCAACAGGGATTGGCATCCGACCTCCGAGTATCACAGGGTGTACCCGGAGCCCAATTCATGGAGCAGCAGTTTTATGATTTTTGAGGATGAGAACAGTTTCTGGAACTAAAGATTTTT]
[-] EMBL BI306241 [CAGGGGTTGCAGAAGGATTCAGATGAACTTAAACCAAAGAGCACCAAGGGGGTGACGTTTCCCAAGGTGGAGCCCGAAAAGGAACTCAAGGCCTCCAACAGGGATTGGCATCCGACCTCCGAGTATCACAGGGTGTACCCGGAGCCCAATTCATGGAGCAGCAGTTTTATGATTTTTGAGGATGAGAACAGTTTCTGGAACTAAAGATTTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9513#0 ACCCGTCGTCTCGCCTTCGCCTCGCCTCGTCTGCTCCACCATCCACCACCACCACGCTAC 60
consensus_9513#1 ------------------------------------------------------------
consensus_9513#0 GCTTTCCTCCTCCCCCTCCACTCCAGATTTTGCTCCCCTCGAGACCACCACCAAAAGCAG 120
consensus_9513#1 ------------------------------------------------------------
consensus_9513#0 CAGCACCACCGAAAGAGGAAGCAAAGCAAAGCAAAGCAGGCGAGGTTTCAGTCTCCCAGG 180
consensus_9513#1 ------------------------------------------------------------
consensus_9513#0 AATCCCCTTCCAAGAACTCCCACCCGATTCGAAGCGCTCGAGGAGGTTCTTTGCTCAATC 240
consensus_9513#1 ------------------------------------------------------------
consensus_9513#0 AGAGTGGATCTTCTGCTGGGAGGATTGGGAAGAGCGGGGGAGAGATGGGGTCCGGATCTT 300
consensus_9513#1 ------------------------------------------------------------
consensus_9513#0 TGCTCAAGGTTCTTGCCAAGAACTTCGATGTTCTTGCTGGGCCTTTGGTTGCACTAGCTT 360
consensus_9513#1 ------------------------------------------------------------
consensus_9513#0 ATCCGTTGTACGCTTCAGTTAAGGCAATAGAAACCAAATCCCCTGTGGATGATCAACAAT 420
consensus_9513#1 ------------------------------------------------------------
consensus_9513#0 GGCTCACATACTGGGTGATGTACTCATTAATAACACTGTTTGAGCTCACATTTGCATCAA 480
consensus_9513#1 ------------------------------------------------------------
consensus_9513#0 TTATTCAGTGGCTTCCTTTTTGGCCATCTATGAAATTGATCTTTATTTGCTGGCTTGTCT 540
consensus_9513#1 ------------------------------------------------------------
consensus_9513#0 TGCCATACTTCAATGGTGCAGCCTTTGTGTACCAAAATTATGTGAGACCTATGTTTGTGA 600
consensus_9513#1 ------------------------------------------------------------
consensus_9513#0 AGCACCAAATGGTTAACATTTGGTATGTCCCTCAGAAAAAGGGCCTTTTCGGTAAATCCG 660
consensus_9513#1 ------------------------------------------------------------
consensus_9513#0 ATGACTTCCTCACAGCACTTGATAAATTTATTGAAGAAAATGGACCTGAAGCTCTGAAGA 720
consensus_9513#1 ------------------------------------------------------------
consensus_9513#0 AACTGACTAACAAGGCTGGCAAATCATCTAAACAGTCTGGCAAATCATGGAAAGATTCAA 780
consensus_9513#1 ------------------------------------------------------------
consensus_9513#0 AGTCATCAAAGGAGTCAAAAGATTCGAAGTCATCAAAGGAATCCAAAGAACCAAAACCAT 840
consensus_9513#1 ------------------------------------------------------------
consensus_9513#0 CGAAAGATTCAAAGCAACTGAAGCCACCAAAAGTTTCGAAAGAGTCAAAGCCATTGAAGG 900
consensus_9513#1 ------------------------------------------------------------
consensus_9513#0 ACTCGAAAGAAGACAAGAAGGCAGTGAAAGAAGATAAGAAGGCGGCTGCGAAAGATTCGA 960
consensus_9513#1 ------------------------------------------------------------
consensus_9513#0 AAGAACAGAAGAAGGCACTGAAGGACTCGAAAGAACTAAAAAAGGCGTTGAAGGACTCGA 1020
consensus_9513#1 ------------------------------------------------------------
consensus_9513#0 AAGAACAGGGGTCGCAGAAGGATTCAGATGAACTTAAACCAAAGAGCAACAAGCGCGTGA 1080
consensus_9513#1 -----CAGGGGTTGCAGAAGGATTCAGATGAACTTAAACCAAAGAGCACCAAGGGGGTGA 55
******* *********************************** **** * ****
consensus_9513#0 CGTTCGCCGAGGTGGAGCCCGAGAAGGAACTCAAGGCCTCCAACAGCGACTGGCATCCGA 1140
consensus_9513#1 CGTTTCCCAAGGTGGAGCCCGAAAAGGAACTCAAGGCCTCCAACAGGGATTGGCATCCGA 115
**** ** ************* *********************** ** **********
consensus_9513#0 CCTCCGAGTATCACAGCGTGTACCCGGAGCACAACTCATGGAGCAGCAGCTTCATGATCT 1200
consensus_9513#1 CCTCCGAGTATCACAGGGTGTACCCGGAGCCCAATTCATGGAGCAGCAGTTTTATGATTT 175
**************** ************* *** ************** ** ***** *
consensus_9513#0 TTGAGGATGAGAACAGTTACTGGAACTAGAGATCTCTAGACCTGCCAAAAAAAAAAAGCA 1260
consensus_9513#1 TTGAGGATGAGAACAGTTTCTGGAACTAAAGATTTTT----------------------- 212
****************** ********* **** * *
consensus_9513#0 GCCCGGTGAAGAGTCTTCAGTTAGTTAGAAGTAGCTAGGAGGCCATTTAAACTCTCTTGT 1320
consensus_9513#1 ------------------------------------------------------------
consensus_9513#0 TCTAGCTGTCCTCTATCGATTGTTCTGACTTGGGTCACCATGTAACATATTTCTCTAATT 1380
consensus_9513#1 ------------------------------------------------------------
consensus_9513#0 TACACCAGTAGATGATGAGTAATGTAGAAATCTGCAATGTGGGTTGGTGATGAAAATGGT 1440
consensus_9513#1 ------------------------------------------------------------
consensus_9513#0 GATGCTGGTAGAATTCAGATTATATCAAAAAA 1472
consensus_9513#1 --------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||