These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9515#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 975 fasta sequence [AACACAACACAGCAGGTGAAGCGAGAGAGAGAGAGAGAAGCCACAGGCGCAGCCTCCTTGCTCGCATCATCATCCATGGCGGCGACCGCGCCTCGTCTCCTCCTGATGGCTCTCATGGCCGCCACCCTCGCCGGCCGGTCAGAGGGGGCGTGGTGCATTTGCAGGCAGGACATGCCGGACAGCACGCTGCAGAAGACGCTGGACTACGCGTGCGGCGACGGCGCCGACTGCAAGCCCATCCAGCAGAGCGGCGCCTGCTTCAGCCCGGACACCGTCAAGGCCCACTGTTCCTACGCCGTCAACAGCTTCTACCAGCGCAACAACCAGAACTCCCAGGCCTGCGTCTTCTCTGGCACCGCCACCCTCGTCACCACCGACCCAAGCTCCAACGGCTGCATGTACCCTGCCTCTGCTAGCGCTGCTGGGACGGGCACACCGACAAGC-GGCACCGGGGGCAGCACTGGCGTGGACGGCCCTCCTGGAATGGGGCTAGGTCCTTCAAGCTTCAAC-GACAACAGTGGCGCCAGCCTCCTCCCGGAGGTCGGAACGGCGATGTGGATACTGATCCTCGCTTGCTCAATCATGGTTCTGAACTTTAGTTAGAGTTTAGGGCGTGCGATGAGGAGACAAGACACCCCCTCTCCTCCCCCCTTACTGTTCAGGGGTCTTGTTTCTTGCACTTTTCTTTCTAGTGGTAGTGGTGGTGGTGGCAAGCAGAAAACGAACCCTTTGATGACAATGATTGTATTCCATTCTGGTGAAGAATTTGGGAGTGCTGAGACCCTAACGGGTTGCATGTTGCTGTGCTGCCATTTCCTCCTTTTTCGCTAAAAAAAAAATAAATTTTTAGTTCATGCTAGGTGGGAGGGTTATGTCTTGTTATGATCAGTTGTCCTGTGAAGCATGGTTGCTCTGAATCTCTCTCTGATGATGCTGAATGGAGTGCCATGGTTGATATAGTGCTATTGTGAAAAA] [+] EMBL AK103836 [AACACAACACAGCAGGTGAAGCGAGAGAGAGAGAGAGAAGCCACAGGCGCAGCCTCCTTGCTCGCATCATCATCCATGGCGGCGACCGCGCCTCGTCTCCTCCTGATGGCTCTCATGGCCGCCACCCTCGCCGGCCGGTCAGAGGGGGCGTGGTGCATTTGCAGGCAGGACATGCCGGACAGCACGCTGCAGAAGACGCTGGACTACGCGTGCGGCGACGGCGCCGACTGCAAGCCCATCCAGCAGAGCGGCGCCTGCTTCAGCCCGGACACCGTCAAGGCCCACTGTTCCTACGCCGTCAACAGCTTCTACCAGCGCAACAACCAGAACTCCCAGGCCTGCGTCTTCTCTGGCACCGCCACCCTCGTCACCACCGACCCAAGCTCCAACGGCTGCATGTACCCTGCCTCTGCTAGCGCTGCTGGGACGGGCACACCGACAAGC GGCACCGGGGGCAGCACTGGCGTGGACGGCCCTCCTGGAATGGGGCTAGGTCCTTCAAGCTTCAAC GACAACAGTGGCGCCAGCCTCCTCCCGGAGGTCGGAACGGCGATGTGGATACTGATCCTCGCTTGCTCAATCATGGTTCTGAACTTTAGTTAGAGTTTAGGGCGTGCGATGAGGAGACAAGACACCCCCTCTCCTCCCCCCTTACTGTTCAGGGGTCTTGTTTCTTGCACTTTTCTTTCTAGTGGTAGTGGTGGTGGTGGCAAGCAGAAAACGAACCCTTTGATGACAATGATTGTATTCCATTCTGGTGAAGAATTTGGGAGTGCTGAGACCCTAACGGGTTGCATGTTG ] [+] EMBL BI795569 [ CAAC GCTGCATGTACCCTGCCTCTGCTAGCGCT CTGGGACGGGCACACCGACAAGC GGCACCGGGGGCAGCACTGGCGTGGACGGCCCTCCTGGAAT GGGCTAGGTCCTTCAAGCTTCAAC GACAACAGTGGCGCCAGCCTCCTCCCGGAGGTCGGAACGGCGATGTGGATACTGATCCTCGCTTGCTCAATCATGGTTCTGAACTTTAGTTAGAGTTTAGGGCGTGCGATGAGGAGACAAGACACCCCCTCTCCTCCCCCCTTACTGTTCAGGGGTCTTGTTTCTTGCACTTTTCTTTCTAGTGGTAGTGGTGGTGGTGGCAAGCAGAAAACGAACCCTTTGATGACAATGATTGTATTCCATTCTGGTGAAGAATTTGGGAGTGCTGAGACCCTAACGGGTTGCATGTTGCTGTGCTGCCATTTCCTCCTTTTTCGCTAAAAAAAAAA ] [+] EMBL AU083481 [ TACCCTGCCTCTGCTAGCGCTGCTGGGACGGGCACACCGACAAGCGGGCACCGGGGGCAGCACTGGCGTGGACGGCCCTCCTGGAATGGGGCTAGGTCCTTCAAGCTTCAACGGACAACAGTGGCGCCAGCCTCCTCCCGGAGGTCGGAACGGCGATGTGGATACTGATCCTCGCTTGCTCAATCATGGTTCTGAACTTTAGTTAGAGTTTAGGGCGTGCGATGAGGAGACAAGACACCCCCTCTCCTCCCCCCTTACTGTTCAGGGGTCTTGTTTCTTGCACTTTTCTTTCTAGTGGTAGTGGTGGTGGTGGCAAGCAGAAAACGAACCCTTTGATGACAATGATTGTATTCCATTCTGGTGAAGAATTTGGGAGTGCTGAGACCCTAACGGGTTGCATGTTGCTGTGCTGCCATTTCCTCCTTTTTCGCTATCTCTGCTGTAAATTTTTAGTTCATGCTAGGTGGGAGGGTTATGTCTTGTTATGATCAGTTGTCCTGTGAAGCATGGTTGCTCTGAATCTCTCTCTGATGATGCTGAATGGAGTGCCATGGTTGATATAGTGCTATTGTGAAAAA] consensusID : consensus_9515#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 545 fasta sequence [GCCCGGACACCGTCAAGGCCCACTGTTCCTACTCCGTCAACAGCTTCTACCAGCGCAACAACCAGAACTCCCAGGCCTGCGTCTTCTCTGCACCGCCACCCTCGTCACCACCGACCCAAGCTCCAACGGCTGCATGTACCCTGCCTCTGCTAGCGCTGCTGGGACGGGCACACCGACAAGCGGCACCGGGGGCAGCACTGGCGTGGACGGCCCTCCTGGAATGGGGCTAGGTCCTTCAAGCTTCAACGACAACAGTGGCGCCAGCCTCCTCCCGGAGGTCGGAACGGCGATGTGGATACTGATCCTCGCTTGCTCAATCATGGTTCTGAACTTTAGTTAGAGTTTAGGGCGTGCGATGAGGAGACAAGACACCCCCTCTCCTCCCCCCTTACTGTTCAGGGGTCTTGTTTCTTGCACTTTTCTTTCTAGTGCTGCCATTTCCTCCTTTTTCGCTATCTCTGCTGTAAATTTTTAGTTCATGCTAGGTGGGAGGGTTATGTCTTGTTATGATCAGTTGTCCTGTGAAGCATGGTTGCTCTGAAAAA] [+] EMBL BI799561 [GCCCGGACACCGTCAAGGCCCACTGTTCCTACTCCGTCAACAGCTTCTACCAGCGCAACAACCAGAACTCCCAGGCCTGCGTCTTCTCTGCACCGCCACCCTCGTCACCACCGACCCAAGCTCCAACGGCTGCATGTACCCTGCCTCTGCTAGCGCTGCTGGGACGGGCACACCGACAAGCGGCACCGGGGGCAGCACTGGCGTGGACGGCCCTCCTGGAATGGGGCTAGGTCCTTCAAGCTTCAACGACAACAGTGGCGCCAGCCTCCTCCCGGAGGTCGGAACGGCGATGTGGATACTGATCCTCGCTTGCTCAATCATGGTTCTGAACTTTAGTTAGAGTTTAGGGCGTGCGATGAGGAGACAAGACACCCCCTCTCCTCCCCCCTTACTGTTCAGGGGTCTTGTTTCTTGCACTTTTCTTTCTAGTGCTGCCATTTCCTCCTTTTTCGCTATCTCTGCTGTAAATTTTTAGTTCATGCTAGGTGGGAGGGTTATGTCTTGTTATGATCAGTTGTCCTGTGAAGCATGGTTGCTCTGAAAAA] [+] EMBL C74186 [ GTACCCTGCCTCTGCTAGCGCTGCTGGGACGGGCACACCGACAAGCGGCACCGGGGGCAGCACTGGCGTGGACGGCCCTACTGGAATGGGGCTAGGTCCTTCAAGCTTCAACGACAACAGTTGCGCCA CTCCTCCCGGAGGTCGGAACGGCGATGTGGATACTGATCCTCGCTTGCTCAATCATGGTTCTGAACTTTAGTTAGAGTTTAGGGCGTNCGATGAGGAGACAAGACA CCCCTCTCCTCCCCCCTTACTGTTCANGGGTCTTGTTTCTTGCACTTT ] consensusID : consensus_9515#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 362 fasta sequence [CGGCCTCGCTAGCGCTGCTGGGACGGCCACACCGACAAGCGGCACCGGGGCCAGCACTGGCGTGGACGCCCACTCCTGGAATGGGGCTAGTCCTTCAAGCTTCAACGACAACAGTGGCGCCAGCACTCACTCCCGGAGGTCGGAACGCGATGTGGATACTGATCCTCGCTTGCTCAATCATGGTTCTGAACTTTAGTTAGATTTAGGGCTCGATGAGGAGACAAGACACCCCCTCTCCTCCCCCTTACTGTTCAGGGTCTGTTCTGCACTTTCTTTCTAGCCCATTCCCTTTTCGCTATCTCCTGTAATTTTATTCATTAGTGGAGGTTATCTGTAGACATGTCTGGAACAGGTGCTCTGAA] [+] EMBL BI799102 [CGGCCTCGCTAGCGCTGCTGGGACGGCCACACCGACAAGCGGCACCGGGGCCAGCACTGGCGTGGACGCCCACTCCTGGAATGGGGCTAGTCCTTCAAGCTTCAACGACAACAGTGGCGCCAGCACTCACTCCCGGAGGTCGGAACGCGATGTGGATACTGATCCTCGCTTGCTCAATCATGGTTCTGAACTTTAGTTAGATTTAGGGCTCGATGAGGAGACAAGACACCCCCTCTCCTCCCCCTTACTGTTCAGGGTCTGTTCTGCACTTTCTTTCTAGCCCATTCCCTTTTCGCTATCTCCTGTAATTTTATTCATTAGTGGAGGTTATCTGTAGACATGTCTGGAACAGGTGCTCTGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9515#0 AACACAACACAGCAGGTGAAGCGAGAGAGAGAGAGAGAAGCCACAGGCGCAGCCTCCTTG 60 consensus_9515#1 ------------------------------------------------------------ consensus_9515#2 ------------------------------------------------------------ consensus_9515#0 CTCGCATCATCATCCATGGCGGCGACCGCGCCTCGTCTCCTCCTGATGGCTCTCATGGCC 120 consensus_9515#1 ------------------------------------------------------------ consensus_9515#2 ------------------------------------------------------------ consensus_9515#0 GCCACCCTCGCCGGCCGGTCAGAGGGGGCGTGGTGCATTTGCAGGCAGGACATGCCGGAC 180 consensus_9515#1 ------------------------------------------------------------ consensus_9515#2 ------------------------------------------------------------ consensus_9515#0 AGCACGCTGCAGAAGACGCTGGACTACGCGTGCGGCGACGGCGCCGACTGCAAGCCCATC 240 consensus_9515#1 ------------------------------------------------------------ consensus_9515#2 ------------------------------------------------------------ consensus_9515#0 CAGCAGAGCGGCGCCTGCTTCAGCCCGGACACCGTCAAGGCCCACTGTTCCTACGCCGTC 300 consensus_9515#1 ----------------------GCCCGGACACCGTCAAGGCCCACTGTTCCTACTCCGTC 38 consensus_9515#2 ------------------------------------------------------------ consensus_9515#0 AACAGCTTCTACCAGCGCAACAACCAGAACTCCCAGGCCTGCGTCTTCTCTGGCACCGCC 360 consensus_9515#1 AACAGCTTCTACCAGCGCAACAACCAGAACTCCCAGGCCTGCGTCTTCTCTG-CACCGCC 97 consensus_9515#2 ------------------------------------------------------------ consensus_9515#0 ACCCTCGTCACCACCGACCCAAGCTCCAACGGCTGCATGTACCCTGCCTCTGCTAGCGCT 420 consensus_9515#1 ACCCTCGTCACCACCGACCCAAGCTCCAACGGCTGCATGTACCCTGCCTCTGCTAGCGCT 157 consensus_9515#2 -------------------------------------------CGGCCTC-GCTAGCGCT 16 * ***** ********* consensus_9515#0 GCTGGGACGGGCACACCGACAAGCGGCACCGGGGGCAGCACTGGCGTGGACGGCC-CTCC 479 consensus_9515#1 GCTGGGACGGGCACACCGACAAGCGGCACCGGGGGCAGCACTGGCGTGGACGGCC-CTCC 216 consensus_9515#2 GCTGGGACGGCCACACCGACAAGCGGCACCGGGGCCAGCACTGGCGTGGACGCCCACTCC 76 ********** *********************** ***************** ** **** consensus_9515#0 TGGAATGGGGCTAGGTCCTTCAAGCTTCAACGACAACAGTGGCGCCAGC-CTC-CTCCCG 537 consensus_9515#1 TGGAATGGGGCTAGGTCCTTCAAGCTTCAACGACAACAGTGGCGCCAGC-CTC-CTCCCG 274 consensus_9515#2 TGGAATGGGGCTAG-TCCTTCAAGCTTCAACGACAACAGTGGCGCCAGCACTCACTCCCG 135 ************** ********************************** *** ****** consensus_9515#0 GAGGTCGGAACGGCGATGTGGATACTGATCCTCGCTTGCTCAATCATGGTTCTGAACTTT 597 consensus_9515#1 GAGGTCGGAACGGCGATGTGGATACTGATCCTCGCTTGCTCAATCATGGTTCTGAACTTT 334 consensus_9515#2 GAGGTCGGAACG-CGATGTGGATACTGATCCTCGCTTGCTCAATCATGGTTCTGAACTTT 194 ************ *********************************************** consensus_9515#0 AGTTAGAGTTTAGGGCGTGCGATGAGGAGACAAGACACCCCCTCTCCTCCCCCCTTACTG 657 consensus_9515#1 AGTTAGAGTTTAGGGCGTGCGATGAGGAGACAAGACACCCCCTCTCCTCCCCCCTTACTG 394 consensus_9515#2 AGTTAGA-TTTAGGGC--TCGATGAGGAGACAAGACACCCCCTCTCCTCCCCC-TTACTG 250 ******* ******** ********************************** ****** consensus_9515#0 TTCAGGGGTCTTGTTTCTTGCACTTTTCTTTCTAGTGGTAGTGGTGGTGGTGGCAAGCAG 717 consensus_9515#1 TTCAGGGGTCTTGTTTCTTGCACTTTTCTTTCTAGTG----------------------- 431 consensus_9515#2 TTCAGGG----TCTGTTCTGCACTTT-CTTTCTAGCC----------------------- 282 ******* * * * ******** ******** consensus_9515#0 AAAACGAACCCTTTGATGACAATGATTGTATTCCATTCTGGTGAAGAATTTGGGAGTGCT 777 consensus_9515#1 ------------------------------------------------------------ consensus_9515#2 ----------------------------CATTCCCTTT---------------------- 292 consensus_9515#0 GAGACCCTAACGGGTTGCATGTTGCTGTGCTGCCATTTCCTCCTTTTTCGCTAAAAAAAA 837 consensus_9515#1 -----------------------------CTGCCATTTCCTCCTTTTTCGCTATCTCTGC 462 consensus_9515#2 -----------------------------TCGCTATCTCCTGTAATTTTATTCATTAGTG 323 ** ** **** *** * consensus_9515#0 AATAAATTTTTAGTTCATGCTAGGTGGGAGGGTTATGTCTTGTTATGATCAGTTGTCCTG 897 consensus_9515#1 TGTAAATTTTTAGTTCATGCTAGGTGGGAGGGTTATGTCTTGTTATGATCAGTTGTCCTG 522 consensus_9515#2 GAGGTTATCTGTAGACATGTCTGGAACAGGTGCTCTGAA--------------------- 362 * * **** ** * * * ** consensus_9515#0 TGAAGCATGGTTGCTCTGAATCTCTCTCTGATGATGCTGAATGGAGTGCCATGGTTGATA 957 consensus_9515#1 TGAAGCATGGTTGCTCTGAAAAA------------------------------------- 545 consensus_9515#2 ------------------------------------------------------------ consensus_9515#0 TAGTGCTATTGTGAAAAA 975 consensus_9515#1 ------------------ consensus_9515#2 ------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||