These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9518#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 561 fasta sequence [TGCTGGTAAAACTTAACAATGTTTTAGAGCAAGATACCAGTACATAGTACAAATCAACATACAGATTTGTCACAATTTACTTTAGTACAATTTTACTTATTGACAAACACATTCCATTCTCCGTGGTCCATTTGCTCTGATTGCAGAATGCTCCAATATGAAATCCCTGCCGATTCTTCACTTCTGACCATGCACAGTTGGGACGGCAAAATATACTCAGAAACAATATCAAAGCAAGCAAGCAATAAAACATACTCAGAAAATAAACTTTTGAACTCTTATTTTTCTATAGTATCGGATTGGAAAGGCCTCAGACCGTCCTAGTTCATGAGCAATATCAACATAGCTCTGGCAACAACGATGTGTGCCAGTTCTGAAACCATCATGTCATCAAAGGCATCAGATCCAATCCAACAATTCGCATTCAACTCACAAAAGATTAATCTGCACGAACAGCCATAGAATTTAAAAGGAGATATAGGTTCATCAAAACTGTGTCAGATTAAAGTATTCTCAGCACCCTTATGAAGGAATCAGACAGGGATAACTGTATTTTCACTT] [+] EMBL BI305655 [TGCTGGTAAAACTTAACAATGTTTTAGAGCAAGATACCAGTACATAGTACAAATCAACATACAGATTTGTCACAATTTACTTTAGTACAATTTTACTTATTGACAAACACATTCCATTCTCCGTGGTCCATTTGCTCTGATTGCAGAATGCTCCAATATGAAATCCCTGCCGATTCTTCACTTCTGACCATGCACAGTTGGGACGGCAAAATATACTCAGAAACAATATCAAAGCAAGCAAGCAATAAAACATACTCAGAAAATAAACTTTTGAACTCTTATTTTTCTATAGTATCGGATTGGAAAGGCCTCAGACCGTCCTAGTTCATGAGCAATATCAACATAGCTCTGGCAACAACGATGTGTGCCAGTT ] [+] EMBL BI306187 [TGCTGGTAAAACTTAACAATGTTTTAGAGCAAGATACCAGTACATAGTACAAATCAACATACAGATTTGTCACAATTTACTTTAGTACAATTTTACTTATTGACAAACACATTCCATTCTCCGTGGTCCATTTGCTCTGATTGCAGAATGCTCCAATATGAAATCCCTGCCGATTCTTCACTTCTGACCATGCACAGTTGGGACGGCAAAATATACTCAGAAACAATATCAAAGCAAGCAAGCAATAAAACATACTCAGAAAATAAACTTTTGAACTCTTATTTTTCTATAGTATCGGATTGGAAAGGCCTCAGACCGTCCTAGTTCATGAGCAATATCAACATAGCTCTGGCAACAACGATGTGTGCCAGTT ] [+] EMBL BU673627 [TGCTGGTAAAACTTAACAATGTTTTAGAGCAAGATACCAGTACATAGTACAAATCAACATACAGATTTGTCACAATTTACTTTAGTACAATTTTACTTATTGACAAACACATTCCATTCTCCGTGGTCCATTTGCTCTGATTGCAGAATGCTCCAATATGAAATCCCTGCCGATTCTTCACTTCTGACCATGCACAGTTGGGACGGCAAAATATACTCAGAAACAATATCAAAGCAAGCAAGCAATAAAACATACTCAGAAAATAAACTTTTGAACTCTTATTTTTCTATAGTATCGGATTGGAAAGGCCTCAGACCGTCCTAGTTCATGAGCAATATCAACATAGCTCTGGCAACAACGATGT ] [-] EMBL AU085785 [ ttttTATCGGATTGGAAAGGCCTCAGACCGTCCTAGTTCATGAGCAATATCAACATAGCTCTGGCAACAACGATGTGTGCCAGTTCTGAAACCATCATGTCATCAAAGGCATCAGATCCAATCCAACAATTCGCATTCAACTCACAAAAGATTAATCTGCACGAACAGCCATAGAATTTAAAAGGAGATATAGGTTCATCAAAACTGTGTCAGATTAAAGTATTCTCAGCACCCTTATGAAGGAATCAGACAGGGATAACTGTATTTTCACTT] [-] EMBL C27839 [ ccCATGAGCAATATCAACATAGCTCTGGCAACAACGATGTGTGCCAGTTCTGAAACCATCATGTCATCAAAGGCATCAGATCCAATCCAACAATTCGCATTCAACTCACAAAAGATTAATCTGCACGAACAGCCATAGAATTTAAAAGGAGATATAGGTTCATCAAAACTGTGTCAGATTAAAGTATTCTCAGCACCCTTATGAAGGAATCAGACAGGGATAACTGTATTTTCACT ] consensusID : consensus_9518#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 365 fasta sequence [CAAGATACCAGTACATAGTACAAATCAACATGCAGATTTGCCACTATTTACTTTAGTACAATTTTAGTTATTGACAAACACATTCCATTTTCCGTGGTCCATTTGCTCTGATTACAGAATGTTCCAATATGAAATCCTAGCCGATTATTCATTTATGGCCACGCACAGTTGGCACGGCATAATATACTCAGAAACAATATCGAAGCAAGCAAGCAATATTACATATTCAGAAAAAAAACTTCTGAACTCTTATTTTTCTATAGTATAGGATTGGAAAGGCCTCAGTCCGTCATAGTTCATGATCAATATCCACATAGCTATGGCATCAACTTATGTGTGCCAGTTTATTCAACCATCATGTCAGC] [-] EMBL CF308919 [CAAGATACCAGTACATAGTACAAATCAACATGCAGATTTGCCACTATTTACTTTAGTACAATTTTAGTTATTGACAAACACATTCCATTTTCCGTGGTCCATTTGCTCTGATTACAGAATGTTCCAATATGAAATCCTAGCCGATTATTCATTTATGGCCACGCACAGTTGGCACGGCATAATATACTCAGAAACAATATCGAAGCAAGCAAGCAATATTACATATTCAGAAAAAAAACTTCTGAACTCTTATTTTTCTATAGTATAGGATTGGAAAGGCCTCAGTCCGTCATAGTTCATGATCAATATCCACATAGCTATGGCATCAACTTATGTGTGCCAGTTTATTCAACCATCATGTCAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9518#0 TGCTGGTAAAACTTAACAATGTTTTAGAGCAAGATACCAGTACATAGTACAAATCAACAT 60 consensus_9518#1 -----------------------------CAAGATACCAGTACATAGTACAAATCAACAT 31 ******************************* consensus_9518#0 ACAGATTTGTCACAATTTACTTTAGTACAATTTTACTTATTGACAAACACATTCCATTCT 120 consensus_9518#1 GCAGATTTGCCACTATTTACTTTAGTACAATTTTAGTTATTGACAAACACATTCCATTTT 91 ******** *** ********************* ********************** * consensus_9518#0 CCGTGGTCCATTTGCTCTGATTGCAGAATGCTCCAATATGAAATCCCTGCCGATTCTTCA 180 consensus_9518#1 CCGTGGTCCATTTGCTCTGATTACAGAATGTTCCAATATGAAATCCTAGCCGATTATTCA 151 ********************** ******* *************** ******* **** consensus_9518#0 CTTCTGACCATGCACAGTTGGGACGGCAAAATATACTCAGAAACAATATCAAAGCAAGCA 240 consensus_9518#1 TTTATGGCCACGCACAGTTGGCACGGCATAATATACTCAGAAACAATATCGAAGCAAGCA 211 ** ** *** ********** ****** ********************* ********* consensus_9518#0 AGCAATAAAACATACTCAGAAAATAAACTTTTGAACTCTTATTTTTCTATAGTATCGGAT 300 consensus_9518#1 AGCAATATTACATATTCAGAAAAAAAACTTCTGAACTCTTATTTTTCTATAGTATAGGAT 271 ******* ***** ******** ****** ************************ **** consensus_9518#0 TGGAAAGGCCTCAGACCGTCCTAGTTCATGAGCAATATCAACATAGCTCTGGCAACAACG 360 consensus_9518#1 TGGAAAGGCCTCAGTCCGTCATAGTTCATGATCAATATCCACATAGCTATGGCATCAACT 331 ************** ***** ********** ******* ******** ***** **** consensus_9518#0 -ATGTGTGCCAGTTC-TGAAACCATCATGTCATCAAAGGCATCAGATCCAATCCAACAAT 418 consensus_9518#1 TATGTGTGCCAGTTTATTCAACCATCATGTCAGC-------------------------- 365 ************* * ************* * consensus_9518#0 TCGCATTCAACTCACAAAAGATTAATCTGCACGAACAGCCATAGAATTTAAAAGGAGATA 478 consensus_9518#1 ------------------------------------------------------------ consensus_9518#0 TAGGTTCATCAAAACTGTGTCAGATTAAAGTATTCTCAGCACCCTTATGAAGGAATCAGA 538 consensus_9518#1 ------------------------------------------------------------ consensus_9518#0 CAGGGATAACTGTATTTTCACTT 561 consensus_9518#1 ----------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||