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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9521#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1558 fasta sequence
[GCTGCAGAAGTGCAGAGGCCATTCCGTTCCGCGTGTGTGCGCGTCCACCCGCCTCCCCCTCCCCTTCTTCACCGAGAGTCGTCGCGGTCACTCGTCCGTATCTGCCTCGGTGGGGGCGGCGGTGCGTGCGTGCGTGCGCGGCCGCTGTATTTGGCAGGACTCCTCGTCTCGTCGTCTCCCTCTCCCCCGAGAAAACCCCACCCCACTACTCCTCTCCACCGCCATCATTGTCGGCGCGAGCGAGAGCCCAAGCCCAAGCCGACCCCCGAGGGAAGGGGAAGACGGGGCCGAGATGGCGGGGCGCTACGACAGCAACCCCTTCGAGGAGGACGACGTGAACCCTTTCTCGGAACAAGCGCGTGGTAAGGCTGGAGGGCAGCCCAGCTATGGCGGCGGCGCGTTCTACATGCCGAATCCACGGAATGTGCCTTCTGTGTCGTCGAATTCGCGGCTTTCGCCTCTTCCCCCTGAGCCCGCAGCTTTTGGGGCTACGGTGGATATCCCTCTTGACTCTTCCAAGGACCTGAAGAATAGGGAAAAGGAGCTGCAAGCTAGGGAAGCGGAATTGAACAAGAGGGAGAAGGAGCTAAAAAGGAGGGAGGAGGCTGCAGCGCGAGCTGGTATTGTCATTGAGGAGAAAAACTGGCCTCCATTTCTGCCACTCATCCATCATGATATCACCAATGAGATACCGAGTCACCTTCAAAGAATGCAATATGTTGCATTTGCATCATTTCTTGGATTGGCTTGCTGTCTCTTCTGGAACGTCATAGCAGTTACTTCAGCTTGGGTCAAGGGGGAAGGCGTGAAGATATGGTTGCTGGCAATCATCTACTTCATCTCTGGGGTTCCTGGTGCATATGTTTTATGGTATCGACCTCTGTATAATGCTATGAGGACTGATAGTGCCTTGAAGTTTGGATTGTTCTTCTTGGTTTACCTGTTCCATATTCTTTTCTGTGTATTTTCTGCTGTGGCTCCTCCTGTTGTCTTCGAGGGGAAATCATTGGCGGGGATTTTACCAGCAATTGATCTCATCAGCAAGAATGCTTTGGTGGGGATCTTCTACTTTGTTGGATTTGGATTGTTCTGCGTCGAATCATTGCTCAGCATCTGGGTTATCCAGCAAGTGTACATGTACTTCCGAGGAAGTGGAAAAGCTGCTGAGATGAAGCGTGATGCAACTAGGGGTGCTATGCGGGCAGCTTTTTAATTATCAGAAAAGATTATTGGTCCGACTCATATCTCTGATGGAATGGATAGATTGTGGTATAAACGAACATATATGTTTTCCCTGTTTGCTGACTACAATTTCAAATTGTTAGTAGGTTACAGTGACGTTGTATGACCTGTCCTCTTGATCCATCAATATAGAGAATGTGCAGTTGTTACTTGTTACAGGCTTTACAGCTGGTGTTACTAGCGTAGAACATTTTCGTTTTCGTCTGGGCTAAAAAAGTATAAATCGACACCAATGAATGATTCAGCCCATGAAAGAATTCTCTTTGTTATATGTACAGGAAACAAATCAGATAGGCAATCAAATGCTATTTGTTGG]
[+] EMBL AK102110 [GCTGCAGAAGTGCAGAGGCCATTCCGTTCCGCGTGTGTGCGCGTCCACCCGCCTCCCCCTCCCCTTCTTCACCGAGAGTCGTCGCGGTCACTCGTCCGTATCTGCCTCGGTGGGGGCGGCGGTGCGTGCGTGCGTGCGCGGCCGCTGTATTTGGCAGGACTCCTCGTCTCGTCGTCTCCCTCTCCCCCGAGAAAACCCCACCCCACTACTCCTCTCCACCGCCATCATTGTCGGCGCGAGCGAGAGCCCAAGCCCAAGCCGACCCCCGAGGGAAGGGGAAGACGGGGCCGAGATGGCGGGGCGCTACGACAGCAACCCCTTCGAGGAGGACGACGTGAACCCTTTCTCGGAACAAGCGCGTGGTAAGGCTGGAGGGCAGCCCAGCTATGGCGGCGGCGCGTTCTACATGCCGAATCCACGGAATGTGCCTTCTGTGTCGTCGAATTCGCGGCTTTCGCCTCTTCCCCCTGAGCCCGCAGCTTTTGGGGCTACGGTGGATATCCCTCTTGACTCTTCCAAGGACCTGAAGAATAGGGAAAAGGAGCTGCAAGCTAGGGAAGCGGAATTGAACAAGAGGGAGAAGGAGCTAAAAAGGAGGGAGGAGGCTGCAGCGCGAGCTGGTATTGTCATTGAGGAGAAAAACTGGCCTCCATTTCTGCCACTCATCCATCATGATATCACCAATGAGATACCGAGTCACCTTCAAAGAATGCAATATGTTGCATTTGCATCATTTCTTGGATTGGCTTGCTGTCTCTTCTGGAACGTCATAGCAGTTACTTCAGCTTGGGTCAAGGGGGAAGGCGTGAAGATATGGTTGCTGGCAATCATCTACTTCATCTCTGGGGTTCCTGGTGCATATGTTTTATGGTATCGACCTCTGTATAATGCTATGAGGACTGATAGTGCCTTGAAGTTTGGATTGTTCTTCTTGGTTTACCTGTTCCATATTCTTTTCTGTGTATTTTCTGCTGTGGCTCCTCCTGTTGTCTTCGAGGGGAAATCATTGGCGGGGATTTTACCAGCAATTGATCTCATCAGCAAGAATGCTTTGGTGGGGATCTTCTACTTTGTTGGATTTGGATTGTTCTGCGTCGAATCATTGCTCAGCATCTGGGTTATCCAGCAAGTGTACATGTACTTCCGAGGAAGTGGAAAAGCTGCTGAGATGAAGCGTGATGCAACTAGGGGTGCTATGCGGGCAGCTTTTTAATTATCAGAAAAGATTATTGGTCCGACTCATATCTCTGATGGAATGGATAGATTGTGGTATAAACGAACATATATGTTTTCCCTGTTTGCTGACTACAATTTCAAATTGTTAGTAGGTTACAGTGACGTTGTATGACCTGTCCTCTTGATCCATCAATATAGAGAATGTGCAGTTGTTACTTGTTACAGGCTTTACAGCTGGTGTTACTAGCGTAGAACATTTTCGTTTTCGTCTGGGCTAAAAAAGTATAAATCGACACCAATGAATGATTCAGCCCATGAAAGAATTCTCTTTGTTATATGTACAGGAAACAAATCAGATAGGCAATCAAATGCTATTTGTTGG]
[+] EMBL AU085850 [ CAGGACTCCTCGTCTCGTCGTCTCCCTCTCCCCCGAGAAAACCCCACCCCACTACTCCTCTCCACCGCCATCATTGTCGGCGCGAGCGAGAGCCCAAGCCCAAGCCGACCCCCGAAGGAAGGGGAAGACGGGGCCGAGATGGCGGGGCGCTACGACAGCAACCCCTTCGAGGAGGACGACGTGAACCCTTTCTCGGAACAAGCGCGTGGTAAGGCTGGAGGGCAGCCCAGCTATGGCGGCGGCGCGTTCTACATGCCGAATCCACGGAATGTGCCTTCTGTGTCGTCGAATTCGCGGCTTTCGCCTCTTCCCCCTGAGCCCGCAGCTTTTGGGGCTACGGTGGATATCCCTCTTGACTCTTCCAAGGACCTGAAGAATAGGGAAAAGGAGCTGCAA CTA ]
[+] EMBL AK061125 [ CCACCGCCATCATTGTCGGCGCGAGCGAGAGCCCAAGCCCAAGCCGACCCCCGAGGGAAGGGGAAGACGGGGCCGAGATGGCGGGGCGCTACGACAGCAACCCCTTCGAGGAGGACGACGTGAACCCTTTCTCGGAACAAGCGCGTGGTAAGGCTGGAGGGCAGCCCAGCTATGGCGGCGGCGCGTTCTACATGCCGAATCCACGGAATGTGCCTTCTGTGTCGTCGAATTCGCGGCTTTCGCCTCTTCCCCCTGAGCCCGCAGCTTTTGGGGCTACGGTGGATATCCCTCTTGACTCTTCCAAGGACCTGAAGAATAGGGAAAAGGAGCTGCAAGCTAGGGAAGCGGAATTGAACAAGAGGGAGAAGGAGCTAAAAAGGAGGGAGGAGGCTGCAGCGCGAGCTGGTATTGTCATTGAGGAGAAAAACTGGCCTCCATTTCTGCCACTCATCCATCATGATATCACCAATGAGATACCGAGTCACCTTCAAAGAATGCAATATGTTGCATTTGCATCATTTCTTGGATTGGCTTGCTGTCTCTTCTGGAACGTCATAGCAGTTACTTCAGCTTGGGTCAAGGGGGAAGGCGTGAAGATATGGTTGCTGGCAATCATCTACTTCATCTCTGGGGTTCCTGGTGCATATGTTTTATGGTATCGACCTCTGTATAATGCTATGAGGACTGATAGTGCCTTGAAGTTTGGATTGTTCTTCTTGGTTTACCTGTTCCATATTCTTTTCTGTGTATTTTCTGCTGTGGCTCCTCCTGTTGTCTTCGAGGGGAAATCATTGGCGGGGATTTTACCAGCAATTGATCTCATCAGCAAGAATGCTTTGGTGGGGATCTTCTACTTTGTTGGATTTGGATTGTTCTGCGTCGAATCATTGCTCAGCATCTGGGTTATCCAGCAAGTGTACATGTACTTCCGAGGAAGTGGAAAAGCTGCTGAGATGAAGCGTGATGCAACTAGGGGTGCTATGCGGGCAGCTTTTTAATTATCAGAAAAGATTATTGGTCCGACTCATATCTCTGATGGAATGGATAGATTGTGGTATAAACGAACATATATGTTTTCCCTGTTTGCTGACTACAATTTCAAATTGTTAGTAGGTTACAGTGACGTTGTATGACCTGTCCTCTTGATTCATCAATATAGAGAATG ]
consensusID : consensus_9521#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 452 fasta sequence
[CTGCTGTGGCNCCCCCTGTTGCCTCGAGGGGAAATCATTGGCGGGGATTTTACCAAGCAATTGATCTCATCAGCAAGAATGCTTTGGTGGGGATCTTCCTACTTTGTTGGATTTGGATTGTTCTGCGTCGAATCATTGCTCAGCATCTGGGTTATCCAGCAAGTGTACATGTACTTCCGAGGAAGTGGAAAAGCTGCTGAGATGAAGCGTGATGCAACTAGGGGTGCTATGCGGGCAGCTTTTTAATTATCAGAAAAGATTATTGGTCCGACTCATATCTCTGATGGAATGGATAGATTGTGGTATAAACGAACATATATGTTTTCCCTGTTTGCTGACTACAATTTCAAATTG-TTAG-TAGGTTACAGTGACGTTGTATGACCTGTCCTCTTGAT-TCATCAAT-ATAGAGAA-TGTGCA-GTTGTTACTTGTTAAAAAAANAAAAAGAAAAGCAA]
[+] EMBL C98667 [CTGCTGTGGCNCCCCCTGTTGCCTCGAGGGGAAATCATTGGCGGGGATTTTACCAAGCAATTGATCTCATCAGCAAGAATGCTTTGGTGGGGATCTTCCTACTTTGTTGGATTTGGATTGTTCTGCGTCGAATCATTGCTCAGCATCTGGGTTATCCAGCAAGTGTACATGTACTTCCGAGGAAGTGGAAAAGCTGCTGAGATGAAGCGTGATGCAACTAGGGGTGCTATGCGGGCAGCTTTTTAATTATCAGAAAAGATTATTGGTCCGACTCATATCTCTGATGGAATGGATAGATTGTGGTATAAACGAACATATATGTTTTCCCTGTTTGCTGACTACAATTTCAAATTG TTAG TAGGTTACAGTGACGTTGTATGACCTGTCCTCTTGAT TCATCAAT ATAGAGAA TGTGCA GTTGTTACTTGTAAAAAAAAAAAAAA ]
[-] EMBL C28911 [ ATCAGCAAGAATGCNTTGGT GGGATC TCCTACNTTGGTGGATTTGGATTGTTCTNCGTCGAATCATTGCTCAGCATCTGGGTTATCCAGCAAGTGTACATGTACNTCCGAGGAAGTGGAAAAGCTGCTGAGATGAAGCGTGATGCAACTAGGGGTGCTATGCGGGCAGCTTTTTAATTATCAGNAAAGATTATTGGTCCGACTCATATCTCTGATGGAATGGATAGATTGTGGTATAAACGGACATATATGTTTTCCCTGTTTGCTGACTACAATTTCAAATTG TTAG TAGGTTACAGTGACGTTGTATGACCTGTCCTCTTGAT TCATNANTCATGAAGAA TGTGCA GTTGTTACTTGTTAAANANANc ]
[+] EMBL BI794950 [ CGAATCATTGCTCAGCATCTGGGTTATCCAGCAAGTGTACATGTACTTCCGAGGAAGTGGAAAAGCTGCTGAGATGAAGCGTGATGCAACTAGGGGTGCTAT C GGCAGCTTTTTAATTATCAGAAAAGATTATTGGTCCGACTCATATCTCTGATGGAATGGATAGATTGTGGTATAAACGAACATATATGTTTTCCCTGTTTGCTGACTAC ATTTCAAATTGTTTAGTTAGGCTCCAGCGACGTTGTATGACCTGTCCTCCTGATGTCATCAAT ATAGAGAACTGTGCAGGTTGTTACTTGTTCAATACAGACAAAGAAAAGCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9521#0 GCTGCAGAAGTGCAGAGGCCATTCCGTTCCGCGTGTGTGCGCGTCCACCCGCCTCCCCCT 60
consensus_9521#1 ------------------------------------------------------------
consensus_9521#0 CCCCTTCTTCACCGAGAGTCGTCGCGGTCACTCGTCCGTATCTGCCTCGGTGGGGGCGGC 120
consensus_9521#1 ------------------------------------------------------------
consensus_9521#0 GGTGCGTGCGTGCGTGCGCGGCCGCTGTATTTGGCAGGACTCCTCGTCTCGTCGTCTCCC 180
consensus_9521#1 ------------------------------------------------------------
consensus_9521#0 TCTCCCCCGAGAAAACCCCACCCCACTACTCCTCTCCACCGCCATCATTGTCGGCGCGAG 240
consensus_9521#1 ------------------------------------------------------------
consensus_9521#0 CGAGAGCCCAAGCCCAAGCCGACCCCCGAGGGAAGGGGAAGACGGGGCCGAGATGGCGGG 300
consensus_9521#1 ------------------------------------------------------------
consensus_9521#0 GCGCTACGACAGCAACCCCTTCGAGGAGGACGACGTGAACCCTTTCTCGGAACAAGCGCG 360
consensus_9521#1 ------------------------------------------------------------
consensus_9521#0 TGGTAAGGCTGGAGGGCAGCCCAGCTATGGCGGCGGCGCGTTCTACATGCCGAATCCACG 420
consensus_9521#1 ------------------------------------------------------------
consensus_9521#0 GAATGTGCCTTCTGTGTCGTCGAATTCGCGGCTTTCGCCTCTTCCCCCTGAGCCCGCAGC 480
consensus_9521#1 ------------------------------------------------------------
consensus_9521#0 TTTTGGGGCTACGGTGGATATCCCTCTTGACTCTTCCAAGGACCTGAAGAATAGGGAAAA 540
consensus_9521#1 ------------------------------------------------------------
consensus_9521#0 GGAGCTGCAAGCTAGGGAAGCGGAATTGAACAAGAGGGAGAAGGAGCTAAAAAGGAGGGA 600
consensus_9521#1 ------------------------------------------------------------
consensus_9521#0 GGAGGCTGCAGCGCGAGCTGGTATTGTCATTGAGGAGAAAAACTGGCCTCCATTTCTGCC 660
consensus_9521#1 ------------------------------------------------------------
consensus_9521#0 ACTCATCCATCATGATATCACCAATGAGATACCGAGTCACCTTCAAAGAATGCAATATGT 720
consensus_9521#1 ------------------------------------------------------------
consensus_9521#0 TGCATTTGCATCATTTCTTGGATTGGCTTGCTGTCTCTTCTGGAACGTCATAGCAGTTAC 780
consensus_9521#1 ------------------------------------------------------------
consensus_9521#0 TTCAGCTTGGGTCAAGGGGGAAGGCGTGAAGATATGGTTGCTGGCAATCATCTACTTCAT 840
consensus_9521#1 ------------------------------------------------------------
consensus_9521#0 CTCTGGGGTTCCTGGTGCATATGTTTTATGGTATCGACCTCTGTATAATGCTATGAGGAC 900
consensus_9521#1 ------------------------------------------------------------
consensus_9521#0 TGATAGTGCCTTGAAGTTTGGATTGTTCTTCTTGGTTTACCTGTTCCATATTCTTTTCTG 960
consensus_9521#1 ------------------------------------------------------------
consensus_9521#0 TGTATTTTCTGCTGTGGCTCCTCCTGTTGTCTTCGAGGGGAAATCATTGGCGGGGATTTT 1020
consensus_9521#1 --------CTGCTGTGGCNCCCCCTGTTGCCT-CGAGGGGAAATCATTGGCGGGGATTTT 51
********** ** ******* ** ***************************
consensus_9521#0 ACCA-GCAATTGATCTCATCAGCAAGAATGCTTTGGTGGGGATCTTC-TACTTTGTTGGA 1078
consensus_9521#1 ACCAAGCAATTGATCTCATCAGCAAGAATGCTTTGGTGGGGATCTTCCTACTTTGTTGGA 111
**** ****************************************** ************
consensus_9521#0 TTTGGATTGTTCTGCGTCGAATCATTGCTCAGCATCTGGGTTATCCAGCAAGTGTACATG 1138
consensus_9521#1 TTTGGATTGTTCTGCGTCGAATCATTGCTCAGCATCTGGGTTATCCAGCAAGTGTACATG 171
************************************************************
consensus_9521#0 TACTTCCGAGGAAGTGGAAAAGCTGCTGAGATGAAGCGTGATGCAACTAGGGGTGCTATG 1198
consensus_9521#1 TACTTCCGAGGAAGTGGAAAAGCTGCTGAGATGAAGCGTGATGCAACTAGGGGTGCTATG 231
************************************************************
consensus_9521#0 CGGGCAGCTTTTTAATTATCAGAAAAGATTATTGGTCCGACTCATATCTCTGATGGAATG 1258
consensus_9521#1 CGGGCAGCTTTTTAATTATCAGAAAAGATTATTGGTCCGACTCATATCTCTGATGGAATG 291
************************************************************
consensus_9521#0 GATAGATTGTGGTATAAACGAACATATATGTTTTCCCTGTTTGCTGACTACAATTTCAAA 1318
consensus_9521#1 GATAGATTGTGGTATAAACGAACATATATGTTTTCCCTGTTTGCTGACTACAATTTCAAA 351
************************************************************
consensus_9521#0 TTGTTAGTAGGTTACAGTGACGTTGTATGACCTGTCCTCTTGATCCATCAATATAGAGAA 1378
consensus_9521#1 TTGTTAGTAGGTTACAGTGACGTTGTATGACCTGTCCTCTTGATTCATCAATATAGAGAA 411
******************************************** ***************
consensus_9521#0 TGTGCAGTTGTTACTTGTTACAGGCTTTACAGCTGGTGTTACTAGCGTAGAACATTTTCG 1438
consensus_9521#1 TGTGCAGTTGTTACTTGTTAAAAAAANAAAAAGAAAAGCAA------------------- 452
******************** * * * * *
consensus_9521#0 TTTTCGTCTGGGCTAAAAAAGTATAAATCGACACCAATGAATGATTCAGCCCATGAAAGA 1498
consensus_9521#1 ------------------------------------------------------------
consensus_9521#0 ATTCTCTTTGTTATATGTACAGGAAACAAATCAGATAGGCAATCAAATGCTATTTGTTGG 1558
consensus_9521#1 ------------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||