These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9521#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1558 fasta sequence [GCTGCAGAAGTGCAGAGGCCATTCCGTTCCGCGTGTGTGCGCGTCCACCCGCCTCCCCCTCCCCTTCTTCACCGAGAGTCGTCGCGGTCACTCGTCCGTATCTGCCTCGGTGGGGGCGGCGGTGCGTGCGTGCGTGCGCGGCCGCTGTATTTGGCAGGACTCCTCGTCTCGTCGTCTCCCTCTCCCCCGAGAAAACCCCACCCCACTACTCCTCTCCACCGCCATCATTGTCGGCGCGAGCGAGAGCCCAAGCCCAAGCCGACCCCCGAGGGAAGGGGAAGACGGGGCCGAGATGGCGGGGCGCTACGACAGCAACCCCTTCGAGGAGGACGACGTGAACCCTTTCTCGGAACAAGCGCGTGGTAAGGCTGGAGGGCAGCCCAGCTATGGCGGCGGCGCGTTCTACATGCCGAATCCACGGAATGTGCCTTCTGTGTCGTCGAATTCGCGGCTTTCGCCTCTTCCCCCTGAGCCCGCAGCTTTTGGGGCTACGGTGGATATCCCTCTTGACTCTTCCAAGGACCTGAAGAATAGGGAAAAGGAGCTGCAAGCTAGGGAAGCGGAATTGAACAAGAGGGAGAAGGAGCTAAAAAGGAGGGAGGAGGCTGCAGCGCGAGCTGGTATTGTCATTGAGGAGAAAAACTGGCCTCCATTTCTGCCACTCATCCATCATGATATCACCAATGAGATACCGAGTCACCTTCAAAGAATGCAATATGTTGCATTTGCATCATTTCTTGGATTGGCTTGCTGTCTCTTCTGGAACGTCATAGCAGTTACTTCAGCTTGGGTCAAGGGGGAAGGCGTGAAGATATGGTTGCTGGCAATCATCTACTTCATCTCTGGGGTTCCTGGTGCATATGTTTTATGGTATCGACCTCTGTATAATGCTATGAGGACTGATAGTGCCTTGAAGTTTGGATTGTTCTTCTTGGTTTACCTGTTCCATATTCTTTTCTGTGTATTTTCTGCTGTGGCTCCTCCTGTTGTCTTCGAGGGGAAATCATTGGCGGGGATTTTACCAGCAATTGATCTCATCAGCAAGAATGCTTTGGTGGGGATCTTCTACTTTGTTGGATTTGGATTGTTCTGCGTCGAATCATTGCTCAGCATCTGGGTTATCCAGCAAGTGTACATGTACTTCCGAGGAAGTGGAAAAGCTGCTGAGATGAAGCGTGATGCAACTAGGGGTGCTATGCGGGCAGCTTTTTAATTATCAGAAAAGATTATTGGTCCGACTCATATCTCTGATGGAATGGATAGATTGTGGTATAAACGAACATATATGTTTTCCCTGTTTGCTGACTACAATTTCAAATTGTTAGTAGGTTACAGTGACGTTGTATGACCTGTCCTCTTGATCCATCAATATAGAGAATGTGCAGTTGTTACTTGTTACAGGCTTTACAGCTGGTGTTACTAGCGTAGAACATTTTCGTTTTCGTCTGGGCTAAAAAAGTATAAATCGACACCAATGAATGATTCAGCCCATGAAAGAATTCTCTTTGTTATATGTACAGGAAACAAATCAGATAGGCAATCAAATGCTATTTGTTGG] [+] EMBL AK102110 [GCTGCAGAAGTGCAGAGGCCATTCCGTTCCGCGTGTGTGCGCGTCCACCCGCCTCCCCCTCCCCTTCTTCACCGAGAGTCGTCGCGGTCACTCGTCCGTATCTGCCTCGGTGGGGGCGGCGGTGCGTGCGTGCGTGCGCGGCCGCTGTATTTGGCAGGACTCCTCGTCTCGTCGTCTCCCTCTCCCCCGAGAAAACCCCACCCCACTACTCCTCTCCACCGCCATCATTGTCGGCGCGAGCGAGAGCCCAAGCCCAAGCCGACCCCCGAGGGAAGGGGAAGACGGGGCCGAGATGGCGGGGCGCTACGACAGCAACCCCTTCGAGGAGGACGACGTGAACCCTTTCTCGGAACAAGCGCGTGGTAAGGCTGGAGGGCAGCCCAGCTATGGCGGCGGCGCGTTCTACATGCCGAATCCACGGAATGTGCCTTCTGTGTCGTCGAATTCGCGGCTTTCGCCTCTTCCCCCTGAGCCCGCAGCTTTTGGGGCTACGGTGGATATCCCTCTTGACTCTTCCAAGGACCTGAAGAATAGGGAAAAGGAGCTGCAAGCTAGGGAAGCGGAATTGAACAAGAGGGAGAAGGAGCTAAAAAGGAGGGAGGAGGCTGCAGCGCGAGCTGGTATTGTCATTGAGGAGAAAAACTGGCCTCCATTTCTGCCACTCATCCATCATGATATCACCAATGAGATACCGAGTCACCTTCAAAGAATGCAATATGTTGCATTTGCATCATTTCTTGGATTGGCTTGCTGTCTCTTCTGGAACGTCATAGCAGTTACTTCAGCTTGGGTCAAGGGGGAAGGCGTGAAGATATGGTTGCTGGCAATCATCTACTTCATCTCTGGGGTTCCTGGTGCATATGTTTTATGGTATCGACCTCTGTATAATGCTATGAGGACTGATAGTGCCTTGAAGTTTGGATTGTTCTTCTTGGTTTACCTGTTCCATATTCTTTTCTGTGTATTTTCTGCTGTGGCTCCTCCTGTTGTCTTCGAGGGGAAATCATTGGCGGGGATTTTACCAGCAATTGATCTCATCAGCAAGAATGCTTTGGTGGGGATCTTCTACTTTGTTGGATTTGGATTGTTCTGCGTCGAATCATTGCTCAGCATCTGGGTTATCCAGCAAGTGTACATGTACTTCCGAGGAAGTGGAAAAGCTGCTGAGATGAAGCGTGATGCAACTAGGGGTGCTATGCGGGCAGCTTTTTAATTATCAGAAAAGATTATTGGTCCGACTCATATCTCTGATGGAATGGATAGATTGTGGTATAAACGAACATATATGTTTTCCCTGTTTGCTGACTACAATTTCAAATTGTTAGTAGGTTACAGTGACGTTGTATGACCTGTCCTCTTGATCCATCAATATAGAGAATGTGCAGTTGTTACTTGTTACAGGCTTTACAGCTGGTGTTACTAGCGTAGAACATTTTCGTTTTCGTCTGGGCTAAAAAAGTATAAATCGACACCAATGAATGATTCAGCCCATGAAAGAATTCTCTTTGTTATATGTACAGGAAACAAATCAGATAGGCAATCAAATGCTATTTGTTGG] [+] EMBL AU085850 [ CAGGACTCCTCGTCTCGTCGTCTCCCTCTCCCCCGAGAAAACCCCACCCCACTACTCCTCTCCACCGCCATCATTGTCGGCGCGAGCGAGAGCCCAAGCCCAAGCCGACCCCCGAAGGAAGGGGAAGACGGGGCCGAGATGGCGGGGCGCTACGACAGCAACCCCTTCGAGGAGGACGACGTGAACCCTTTCTCGGAACAAGCGCGTGGTAAGGCTGGAGGGCAGCCCAGCTATGGCGGCGGCGCGTTCTACATGCCGAATCCACGGAATGTGCCTTCTGTGTCGTCGAATTCGCGGCTTTCGCCTCTTCCCCCTGAGCCCGCAGCTTTTGGGGCTACGGTGGATATCCCTCTTGACTCTTCCAAGGACCTGAAGAATAGGGAAAAGGAGCTGCAA CTA ] [+] EMBL AK061125 [ CCACCGCCATCATTGTCGGCGCGAGCGAGAGCCCAAGCCCAAGCCGACCCCCGAGGGAAGGGGAAGACGGGGCCGAGATGGCGGGGCGCTACGACAGCAACCCCTTCGAGGAGGACGACGTGAACCCTTTCTCGGAACAAGCGCGTGGTAAGGCTGGAGGGCAGCCCAGCTATGGCGGCGGCGCGTTCTACATGCCGAATCCACGGAATGTGCCTTCTGTGTCGTCGAATTCGCGGCTTTCGCCTCTTCCCCCTGAGCCCGCAGCTTTTGGGGCTACGGTGGATATCCCTCTTGACTCTTCCAAGGACCTGAAGAATAGGGAAAAGGAGCTGCAAGCTAGGGAAGCGGAATTGAACAAGAGGGAGAAGGAGCTAAAAAGGAGGGAGGAGGCTGCAGCGCGAGCTGGTATTGTCATTGAGGAGAAAAACTGGCCTCCATTTCTGCCACTCATCCATCATGATATCACCAATGAGATACCGAGTCACCTTCAAAGAATGCAATATGTTGCATTTGCATCATTTCTTGGATTGGCTTGCTGTCTCTTCTGGAACGTCATAGCAGTTACTTCAGCTTGGGTCAAGGGGGAAGGCGTGAAGATATGGTTGCTGGCAATCATCTACTTCATCTCTGGGGTTCCTGGTGCATATGTTTTATGGTATCGACCTCTGTATAATGCTATGAGGACTGATAGTGCCTTGAAGTTTGGATTGTTCTTCTTGGTTTACCTGTTCCATATTCTTTTCTGTGTATTTTCTGCTGTGGCTCCTCCTGTTGTCTTCGAGGGGAAATCATTGGCGGGGATTTTACCAGCAATTGATCTCATCAGCAAGAATGCTTTGGTGGGGATCTTCTACTTTGTTGGATTTGGATTGTTCTGCGTCGAATCATTGCTCAGCATCTGGGTTATCCAGCAAGTGTACATGTACTTCCGAGGAAGTGGAAAAGCTGCTGAGATGAAGCGTGATGCAACTAGGGGTGCTATGCGGGCAGCTTTTTAATTATCAGAAAAGATTATTGGTCCGACTCATATCTCTGATGGAATGGATAGATTGTGGTATAAACGAACATATATGTTTTCCCTGTTTGCTGACTACAATTTCAAATTGTTAGTAGGTTACAGTGACGTTGTATGACCTGTCCTCTTGATTCATCAATATAGAGAATG ] consensusID : consensus_9521#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 452 fasta sequence [CTGCTGTGGCNCCCCCTGTTGCCTCGAGGGGAAATCATTGGCGGGGATTTTACCAAGCAATTGATCTCATCAGCAAGAATGCTTTGGTGGGGATCTTCCTACTTTGTTGGATTTGGATTGTTCTGCGTCGAATCATTGCTCAGCATCTGGGTTATCCAGCAAGTGTACATGTACTTCCGAGGAAGTGGAAAAGCTGCTGAGATGAAGCGTGATGCAACTAGGGGTGCTATGCGGGCAGCTTTTTAATTATCAGAAAAGATTATTGGTCCGACTCATATCTCTGATGGAATGGATAGATTGTGGTATAAACGAACATATATGTTTTCCCTGTTTGCTGACTACAATTTCAAATTG-TTAG-TAGGTTACAGTGACGTTGTATGACCTGTCCTCTTGAT-TCATCAAT-ATAGAGAA-TGTGCA-GTTGTTACTTGTTAAAAAAANAAAAAGAAAAGCAA] [+] EMBL C98667 [CTGCTGTGGCNCCCCCTGTTGCCTCGAGGGGAAATCATTGGCGGGGATTTTACCAAGCAATTGATCTCATCAGCAAGAATGCTTTGGTGGGGATCTTCCTACTTTGTTGGATTTGGATTGTTCTGCGTCGAATCATTGCTCAGCATCTGGGTTATCCAGCAAGTGTACATGTACTTCCGAGGAAGTGGAAAAGCTGCTGAGATGAAGCGTGATGCAACTAGGGGTGCTATGCGGGCAGCTTTTTAATTATCAGAAAAGATTATTGGTCCGACTCATATCTCTGATGGAATGGATAGATTGTGGTATAAACGAACATATATGTTTTCCCTGTTTGCTGACTACAATTTCAAATTG TTAG TAGGTTACAGTGACGTTGTATGACCTGTCCTCTTGAT TCATCAAT ATAGAGAA TGTGCA GTTGTTACTTGTAAAAAAAAAAAAAA ] [-] EMBL C28911 [ ATCAGCAAGAATGCNTTGGT GGGATC TCCTACNTTGGTGGATTTGGATTGTTCTNCGTCGAATCATTGCTCAGCATCTGGGTTATCCAGCAAGTGTACATGTACNTCCGAGGAAGTGGAAAAGCTGCTGAGATGAAGCGTGATGCAACTAGGGGTGCTATGCGGGCAGCTTTTTAATTATCAGNAAAGATTATTGGTCCGACTCATATCTCTGATGGAATGGATAGATTGTGGTATAAACGGACATATATGTTTTCCCTGTTTGCTGACTACAATTTCAAATTG TTAG TAGGTTACAGTGACGTTGTATGACCTGTCCTCTTGAT TCATNANTCATGAAGAA TGTGCA GTTGTTACTTGTTAAANANANc ] [+] EMBL BI794950 [ CGAATCATTGCTCAGCATCTGGGTTATCCAGCAAGTGTACATGTACTTCCGAGGAAGTGGAAAAGCTGCTGAGATGAAGCGTGATGCAACTAGGGGTGCTAT C GGCAGCTTTTTAATTATCAGAAAAGATTATTGGTCCGACTCATATCTCTGATGGAATGGATAGATTGTGGTATAAACGAACATATATGTTTTCCCTGTTTGCTGACTAC ATTTCAAATTGTTTAGTTAGGCTCCAGCGACGTTGTATGACCTGTCCTCCTGATGTCATCAAT ATAGAGAACTGTGCAGGTTGTTACTTGTTCAATACAGACAAAGAAAAGCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9521#0 GCTGCAGAAGTGCAGAGGCCATTCCGTTCCGCGTGTGTGCGCGTCCACCCGCCTCCCCCT 60 consensus_9521#1 ------------------------------------------------------------ consensus_9521#0 CCCCTTCTTCACCGAGAGTCGTCGCGGTCACTCGTCCGTATCTGCCTCGGTGGGGGCGGC 120 consensus_9521#1 ------------------------------------------------------------ consensus_9521#0 GGTGCGTGCGTGCGTGCGCGGCCGCTGTATTTGGCAGGACTCCTCGTCTCGTCGTCTCCC 180 consensus_9521#1 ------------------------------------------------------------ consensus_9521#0 TCTCCCCCGAGAAAACCCCACCCCACTACTCCTCTCCACCGCCATCATTGTCGGCGCGAG 240 consensus_9521#1 ------------------------------------------------------------ consensus_9521#0 CGAGAGCCCAAGCCCAAGCCGACCCCCGAGGGAAGGGGAAGACGGGGCCGAGATGGCGGG 300 consensus_9521#1 ------------------------------------------------------------ consensus_9521#0 GCGCTACGACAGCAACCCCTTCGAGGAGGACGACGTGAACCCTTTCTCGGAACAAGCGCG 360 consensus_9521#1 ------------------------------------------------------------ consensus_9521#0 TGGTAAGGCTGGAGGGCAGCCCAGCTATGGCGGCGGCGCGTTCTACATGCCGAATCCACG 420 consensus_9521#1 ------------------------------------------------------------ consensus_9521#0 GAATGTGCCTTCTGTGTCGTCGAATTCGCGGCTTTCGCCTCTTCCCCCTGAGCCCGCAGC 480 consensus_9521#1 ------------------------------------------------------------ consensus_9521#0 TTTTGGGGCTACGGTGGATATCCCTCTTGACTCTTCCAAGGACCTGAAGAATAGGGAAAA 540 consensus_9521#1 ------------------------------------------------------------ consensus_9521#0 GGAGCTGCAAGCTAGGGAAGCGGAATTGAACAAGAGGGAGAAGGAGCTAAAAAGGAGGGA 600 consensus_9521#1 ------------------------------------------------------------ consensus_9521#0 GGAGGCTGCAGCGCGAGCTGGTATTGTCATTGAGGAGAAAAACTGGCCTCCATTTCTGCC 660 consensus_9521#1 ------------------------------------------------------------ consensus_9521#0 ACTCATCCATCATGATATCACCAATGAGATACCGAGTCACCTTCAAAGAATGCAATATGT 720 consensus_9521#1 ------------------------------------------------------------ consensus_9521#0 TGCATTTGCATCATTTCTTGGATTGGCTTGCTGTCTCTTCTGGAACGTCATAGCAGTTAC 780 consensus_9521#1 ------------------------------------------------------------ consensus_9521#0 TTCAGCTTGGGTCAAGGGGGAAGGCGTGAAGATATGGTTGCTGGCAATCATCTACTTCAT 840 consensus_9521#1 ------------------------------------------------------------ consensus_9521#0 CTCTGGGGTTCCTGGTGCATATGTTTTATGGTATCGACCTCTGTATAATGCTATGAGGAC 900 consensus_9521#1 ------------------------------------------------------------ consensus_9521#0 TGATAGTGCCTTGAAGTTTGGATTGTTCTTCTTGGTTTACCTGTTCCATATTCTTTTCTG 960 consensus_9521#1 ------------------------------------------------------------ consensus_9521#0 TGTATTTTCTGCTGTGGCTCCTCCTGTTGTCTTCGAGGGGAAATCATTGGCGGGGATTTT 1020 consensus_9521#1 --------CTGCTGTGGCNCCCCCTGTTGCCT-CGAGGGGAAATCATTGGCGGGGATTTT 51 ********** ** ******* ** *************************** consensus_9521#0 ACCA-GCAATTGATCTCATCAGCAAGAATGCTTTGGTGGGGATCTTC-TACTTTGTTGGA 1078 consensus_9521#1 ACCAAGCAATTGATCTCATCAGCAAGAATGCTTTGGTGGGGATCTTCCTACTTTGTTGGA 111 **** ****************************************** ************ consensus_9521#0 TTTGGATTGTTCTGCGTCGAATCATTGCTCAGCATCTGGGTTATCCAGCAAGTGTACATG 1138 consensus_9521#1 TTTGGATTGTTCTGCGTCGAATCATTGCTCAGCATCTGGGTTATCCAGCAAGTGTACATG 171 ************************************************************ consensus_9521#0 TACTTCCGAGGAAGTGGAAAAGCTGCTGAGATGAAGCGTGATGCAACTAGGGGTGCTATG 1198 consensus_9521#1 TACTTCCGAGGAAGTGGAAAAGCTGCTGAGATGAAGCGTGATGCAACTAGGGGTGCTATG 231 ************************************************************ consensus_9521#0 CGGGCAGCTTTTTAATTATCAGAAAAGATTATTGGTCCGACTCATATCTCTGATGGAATG 1258 consensus_9521#1 CGGGCAGCTTTTTAATTATCAGAAAAGATTATTGGTCCGACTCATATCTCTGATGGAATG 291 ************************************************************ consensus_9521#0 GATAGATTGTGGTATAAACGAACATATATGTTTTCCCTGTTTGCTGACTACAATTTCAAA 1318 consensus_9521#1 GATAGATTGTGGTATAAACGAACATATATGTTTTCCCTGTTTGCTGACTACAATTTCAAA 351 ************************************************************ consensus_9521#0 TTGTTAGTAGGTTACAGTGACGTTGTATGACCTGTCCTCTTGATCCATCAATATAGAGAA 1378 consensus_9521#1 TTGTTAGTAGGTTACAGTGACGTTGTATGACCTGTCCTCTTGATTCATCAATATAGAGAA 411 ******************************************** *************** consensus_9521#0 TGTGCAGTTGTTACTTGTTACAGGCTTTACAGCTGGTGTTACTAGCGTAGAACATTTTCG 1438 consensus_9521#1 TGTGCAGTTGTTACTTGTTAAAAAAANAAAAAGAAAAGCAA------------------- 452 ******************** * * * * * consensus_9521#0 TTTTCGTCTGGGCTAAAAAAGTATAAATCGACACCAATGAATGATTCAGCCCATGAAAGA 1498 consensus_9521#1 ------------------------------------------------------------ consensus_9521#0 ATTCTCTTTGTTATATGTACAGGAAACAAATCAGATAGGCAATCAAATGCTATTTGTTGG 1558 consensus_9521#1 ------------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||