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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9522#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1434 fasta sequence
[AAGAGCTCCACCGCAATGCAACCAATCCCTTGTCTCTCCGTCGAGGATCAGTAATGCTTCACGACGATTGCATCGGTGAGGGACTCTCAAGCCCCATAGCTGCTCAAATTCTTGATTTCTGCGATGACGGCCTAGGTGATGATCTCTTCGCTGCAGTGGCCACTACCTCCGAGCAATTTGCAGCCTCTTCCGAGGATGGTTCATCGTCGTCCACAGCCACACCTCCCCTCTGCAGCAACAGCAATGACATCACAGCTGTTGCAGACACAGCTTTCTCCCCATTACTCTCCTTCGACTCCACCCTCTCAGCCTTCCTTGAGCAAGAGC-AAAACCCTGACCAGGACACC-AAGCTACTTCCCTCCATTG-ATGAAACCTTTACTGNACCAGCATACTATCCAGCTGCCACCGAGGCCAACATAGAACAATTCAGCCAAATAATGGTTCCAGAGCATACAGATGCACCAATGCCCCCAATGCAAACAAACAGGACTGCCAATGCCTTGCTGCCTCTAGCTTCAGGGTATGACGACGAGTGTTTCACAGCAGCACTAGCTGGAGGGTACATGGGTCTGGATGGAACTCTGTATGACCAAACAGGAGTAATGATTCCAAATTGCAATGTGGAGACACCACAAGTAGGATTTTTCAACCATAATAGTACTAGTAACAATGGTATGGTGATGGATTTGAATAATTTTGGAGAGTACCAGAGGATGATGGAAGGTGAAGGACTGACCAGAA-CATATAGCGACACAGATTCGATGCATGGGGCGTTTAATAACGCTGCAGAGATG-CAGATGGGAGAAAACACCCAGCACATGGTAACTGGATGCAATGATAG-CCCACTAACGTTGCCTTCAACAGAAGGCTCAAGCTTGGAAGATACCCCCTACAAAGGTGTGCGTCTAACAGCTGAACAGAGAAAGGAAAAGATCTCCAGGTACATAAAGAAAAGGAACGAAAGGAACTTCAGCAAAAAAATAAAGTACGCTTGTAGAAAAACCTTGGCGGATAGCAGGCCTC-GGGTCCGCGGAAGGTTTGCCAAGAACGACGAACTCTGTGAAGCTACCAGATCAAGCTCCCAAGATTTTGAACAATATGAACATGTTGTGGGAATGAAGGGAGAAGACATGCTTGATTCTTCCAATATTTTGGCACATTTGAGTGGAATGAACCCTTACGGCTATAAGTACAACAGCACTGTGGAATCCTGGATATAATTCTCATAAACACACAAATTAAAGTGTGTTTTCCTTTCAATTGTGCAAGCATTAAACACAGTTTTCCCTTGCTCCCAGTAAATAAGACTGATGCTTTAGAAGCTCTATTCGCAAGAGAAGTGCTTAGGTCAAGTTATTGTTTCTGCACACTACTGATTTGTAAATAGAATTGTTTCCTTGTCATAATAGAGATAACAAGTTTCAAAAAAAAAAA]
[+] EMBL AK071184 [AAGAGCTCCACCGCAATGCAACCAATCCCTTGTCTCTCCGTCGAGGATCAGTAATGCTTCACGACGATTGCATCGGTGAGGGACTCTCAAGCCCCATAGCTGCTCAAATTCTTGATTTCTGCGATGACGGCCTAGGTGATGATCTCTTCGCTGCAGTGGCCACTACCTCCGAGCAATTTGCAGCCTCTTCCGAGGATGGTTCATCGTCGTCCACAGCCACACCTCCCCTCTGCAGCAACAGCAATGACATCACAGCTGTTGCAGACACAGCTTTCTCCCCATTACTCTCCTTCGACTCCACCCTCTCAGCCTTCCTTGAGCAAGAGC AAAACCCTGACCAGGACACC AAGCTACTTCCCTCCATTG ATGAAACCTTTACTGCACCAGCATACTATCCAGCTGCCACCGAGGCCAACATAGAACAATTCAGCCAAATAATGGTTCCAGAGCATACAGATGCACCAATGCCCCCAATGCAAACAAACAGGACTGCCAATGCCTTGCTGCCTCTAGCTTCAGGGTATGACGACGAGTGTTTCACAGCAGCACTAGCTGGAGGGTACATGGGTCTGGATGGAACTCTGTATGACCAAACAGGAGTAATGATTCCAAATTGCAATGTGGAGACACCACAAGTAGGATTTTTCAACCATAATAGTACTAGTAACAATGGTATGGTGATGGATTTGAATAATTTTGGAGAGTACCAGAGGATGATGGAAGGTGAAGGACTGACCAGAA CATATAGCGACACAGATTCGATGCATGGGGCGTTTAATAACGCTGCAGAGATG CAGATGGGAGAAAACACCCAGCACATGGTAACTGGATGCAATGATAG CCCACTAACGTTGCCTTCAACAGAAGGCTCAAGCTTGGAAGATACCCCCTACAAAGGTGTGCGTCTAACAGCTGAACAGAGAAAGGAAAAGATCTCCAGGTACATAAAGAAAAGGAACGAAAGGAACTTCAGCAAAAAAATAAAGTACGCTTGTAGAAAAACCTTGGCGGATAGCAGGCCTC GGGTCCGCGGAAGGTTTGCCAAGAACGACGAACTCTGTGAAGCTACCAGATCAAGCTCCCAAGATTTTGAACAATATGAACATGTTGTGGGAATGAAGGGAGAAGACATGCTTGATTCTTCCAATATTTTGGCACATTTGAGTGGAATGAACCCTTACGGCTATAAGTACAACAGCACTGTGGAATCCTGGATATAATTCTCATAAACACACAAATTAAAGTGTGTTTTCCTTTCAATTGTGCAAGCATTAAACACAGTTTTCCCTTGCTCCCAGTAAATAAGACTGATGCTTTAGAAGCTCTATTCGCAAGAGAAGTGCTTAGGTCAAGTTATTGTTTCTGCACACTACTGATTTGTAAATAGAATTGTTTCCTTGTCATAATAGAGAT ]
[+] EMBL C73088 [ ACCGCAATGCAACCAATCCCTTGTCTCTCCGTCGAGGATCAGTAATGCTTCACGACGATTGCATCGGTGAGGGACTCTCAAGCCCCATAGCTGCTCAAATTCTTGATTTCTGCGATGACGGCCTAGGTGATGATCTCTTCGCTGCAGTGGCCACTACCTCCGAGCAATTTGCAGCCTCTTCCGAGGATGGTTCATCGTCGTCCACAGCCACACCTCCCCTCTGCAGCAACAGCAATGACATCACAGCTGTTGCAGACACAGCTTTCTCCCCATTACTCTCCTTCGACTCCACCCTCTCAGCCTTCCTTGAGCAAGAGC AAAACCCTGACCAGGACACC AAGCTACTTCCCTCCATTG ATG AACCTTTACTGNACCAGCATACTATCCAGNTGGCA CGAGGC ACATAG ACAATTAAG CNAAT ATGGTTCCAGAG ATAa ]
[+] EMBL C71762 [ CAACCAATCCNTTGTTTCTCCGTCGAGGATCAGTAATGCTTCACGACGATTGCATCGGTGAGGGACTCTNAAGCCCCATAGCTGCTCAAATTNTTNATTTCTGCNATGACGGCCTAGGTNATGATCTCTTCGCTGCAGTGGCCACTACCTCCNAGCAATTTGCAGCCTCTTCCGAGGATGGTTCATCGTCGTCCACAGCCACACCTNCCCTNTGCAGCAACAGCAATGACATCACAGCTGTTGCAGACACAGCTTTNTCCCCATTACTCTCCTTCGACTNCACCCTCTCAGCCTTCCTTGAGCAAGAGCAAAAACCCTGACCAGGACACCAAAGCTACTTCCCTCCATTGNATGAAACCTTTACTGNACCAGAATACTATCNAGCTG CACCGAGGg ]
[+] EMBL AU085933 [ GAACCATATAGCGACACAGATTCGATGCATGGGGCGTTTAATAACGCTGCAGAGATGCCAGATGGGAGAAAACACCCAGCACATGGTAACTGGATGCAATGATAGCCCCACTAACGTTGCCTTCAACAGAAGGCTCAAGCTTGGAAGATACCCCCTACAAAGGTGTGCGTCTAACAGCTGAACAGAGAAAGGAAAAGATCTCCAGGTACATAAAGAAAAGGAACGAAAGGAACTTCAGCAAAAAAATAAAGTACGCTTGTAGAAAAACCTTGGCGGATAGCAGGCCTC GGGTCCGCGGAAGGTTTGCCAAGAACGACGAACTCTGTGAAGCTACCAGATCAAGCTCCCAAGATTTTGAACAATATGAACATGTTGTGGGAATGAAGGGAGAAGACATGCTTGATTCTTCCAATATTTTGGCACATTTGAGTGGAATGAACCCTTACGGCTATAAGTACAACAGCACTGTGGAATCCTGGATATAATTCTCATAAACACACAAATTAAAGTGTGTTTTCCTTTCAATTGTGCAAGCATTAAACACAGTTTTCCCTTGCTCCCAGTAAATAAGACTGATGCTTTAGAAGCTCTATTCGCAAGAGAAGTGCTTAGGTCAAGTTATTGTTTCTGCACACTACTGATTTGTAAATAGAATTGTTTCCTTGTCATAATAGAGATAACAAGTTTCAAAAAA ]
[+] EMBL AU172427 [ aaanCAGGCCTCGGGGCCCCCGGAAGGTTTGCCAAGAACGNCGAACTCTGTGAAGCTACCAGATCAAGCTCCCAAGATTTTGACCAATATGAACATGTTGTGGGAATGAAGGGAGAAGACATGCTTGATTCTTCCAATATTTTGGCACATTTGAGTGGAATGAACCCTTACGGCTATAAGTACAACAGCACTGTGGAATCCTGGATATAATTCTCATAAACACACAAATTAAAGTGTGTTTTCCTTTCAATTGTGCAAGCATTAAACACAGTTTTCCCTTGCTCCCAGTAAATAAGACTGATGCTTTAGAAGCTCTATTCGCAAGAGAAGTGCTTAGGTCAAGTTATTGTTTCTGCACACTACTGATTTGTAAATAGAATTGTTTCCTTGTCATAATAGAGATAACAAGTTTCAAGATTAAAAA]
consensusID : consensus_9522#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 829 fasta sequence
[GAGACAAGGGGGACGATTACACTGATATTCGGTTTTGAGTCCAAAAGAGCTCCACCGCAATGCAACCAATCCCTTGTCTCTCCGTCGAGGATCAGTAATGCTTCACGACGATTGCATCGGTGCCAATCAGTACATACCTGCATACATGATACAATAGTTATTATGAAGTCTATAGTGAAAAAGGAACGCACGATGTAGAAATTTTATTCAAAAGCACCAGATCAACATGAAACCTTTCGGATTTGGGTCCGTGGCAGCAGTACCAGAGATCTTTTTTTTTCTATGACATCCTGTGAGCTGCAATAGTCATACATGTGCAAATTTATTGGAATGGAGGGACTCTCAAGCCCCATAGCTGCTCAAATTCTTGATTTCTGCGATGACGGCCTAGGTGATGATCTCTTCGCTGCAGTGGCCACTACCTCCGAGCAATTTGCAGCCTCTTCCGAGGATGGTTCATCGTCGTCCACAGCCACACCTCCCCTCTGCAGCAACAGCAATGACATCACAGCTGCTGCAGACACAGCTTTCTCCCCATTACTCTCCTTCGACTCCACCCTCTCAGCCTTCCTTGAGCAAGAGCAAAACCCTGACCAGGACACCAAGCTACTTCCCTCCATTGATGAAACCTTTACTGCACCAGCATACTATCCAGCTGCCACCGAGGCCAACATAGAACAATTCAGCCAAATAATGGTTCCAGAGCATACAGATGCACCAATGCCCCCAATGCAAACAAACAGGACTGGCAATGCCTTGCTGNCTCTAGCTTCANGGTATGACGACGAGTGNTTCACAGCAGCACTAGCTGGANGGGTACATGGGTCTG]
[+] EMBL CA764707 [GAGACAAGGGGGACGATTACACTGATATTCGGTTTTGAGTCCAAAAGAGCTCCACCGCAATGCAACCAATCCCTTGTCTCTCCGTCGAGGATCAGTAATGCTTCACGACGATTGCATCGGTGCCAATCAGTACATACCTGCATACATGATACAATAGTTATTATGAAGTCTATAGTGAAAAAGGAACGCACGATGTAGAAATTTTATTCAAAAGCACCAGATCAACATGAAACCTTTCGGATTTGGGTCCGTGGCAGCAGTACCAGAGATCTTTTTTTTTCTATGACATCCTGTGAGCTGCAATAGTCATACATGTGCAAATTTATTGGAATGGAGGGACTCTCAAGCCCCATAGCTGCTCAAATTCTTGATTTCTGCGATGACGGCCTAGGTGATGATCTCTTCGCTGCAGTGGCCACTACCTCCGAGCAATTTGCAGCCTCTTCCGAGGATGGTTCATCGTCGTCCACAGCCACACCTCCCCTCTGCAGCAACAGCAATGACATCACAGCTGCTGCAGACACAGCTTTCTCCCCATTACTCTCCTTCGACTCCACCCTCTCAGCCTTCCTTGAGCAAGAGCAAAACCCTGACCAGGACACCAAGCTACTTCCCTCCATTGATGAAACCTTTACTGCACCAGCATACTATCCAGCTGCCACCGAGGCCAACATAGAACAATTCAGCCAAATAATGGTTCCAGAGCATACAGATGCACCAATGCCCCCAATGCAAACAAACAGGACTGGCAATGCCTTGCTGNCTCTAGCTTCANGGTATGACGACGAGTGNTTCACAGCAGCACTAGCTGGANGGGTACATGGGTCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9522#0 ------------------------------------------------------------
consensus_9522#1 GAGACAAGGGGGACGATTACACTGATATTCGGTTTTGAGTCCAAAAGAGCTCCACCGCAA 60
consensus_9522#0 ------------------------------------------------------------
consensus_9522#1 TGCAACCAATCCCTTGTCTCTCCGTCGAGGATCAGTAATGCTTCACGACGATTGCATCGG 120
consensus_9522#0 ------------------------------------------------------------
consensus_9522#1 TGCCAATCAGTACATACCTGCATACATGATACAATAGTTATTATGAAGTCTATAGTGAAA 180
consensus_9522#0 ------------------------------------------------------------
consensus_9522#1 AAGGAACGCACGATGTAGAAATTTTATTCAAAAGCACCAGATCAACATGAAACCTTTCGG 240
consensus_9522#0 ----AAGAGCTCCACCGCAATGCAACCAATCCCTTGTCTC--------TCCGTCGAGGAT 48
consensus_9522#1 ATTTGGGTCCGTGGCAGCAGTACCAGAGATCTTTTTTTTTCTATGACATCCTGTGAGCTG 300
* * * *** * * * *** ** * * *** ***
consensus_9522#0 CAGTAATGCTTCACG-ACGATTGCATCGGT---GAGGGACTCTCAAGCCCCATAGCTGCT 104
consensus_9522#1 CAATAGTCATACATGTGCAAATTTATTGGAATGGAGGGACTCTCAAGCCCCATAGCTGCT 360
** ** * * ** * * * * ** ** ***************************
consensus_9522#0 CAAATTCTTGATTTCTGCGATGACGGCCTAGGTGATGATCTCTTCGCTGCAGTGGCCACT 164
consensus_9522#1 CAAATTCTTGATTTCTGCGATGACGGCCTAGGTGATGATCTCTTCGCTGCAGTGGCCACT 420
************************************************************
consensus_9522#0 ACCTCCGAGCAATTTGCAGCCTCTTCCGAGGATGGTTCATCGTCGTCCACAGCCACACCT 224
consensus_9522#1 ACCTCCGAGCAATTTGCAGCCTCTTCCGAGGATGGTTCATCGTCGTCCACAGCCACACCT 480
************************************************************
consensus_9522#0 CCCCTCTGCAGCAACAGCAATGACATCACAGCTGTTGCAGACACAGCTTTCTCCCCATTA 284
consensus_9522#1 CCCCTCTGCAGCAACAGCAATGACATCACAGCTGCTGCAGACACAGCTTTCTCCCCATTA 540
********************************** *************************
consensus_9522#0 CTCTCCTTCGACTCCACCCTCTCAGCCTTCCTTGAGCAAGAGCAAAACCCTGACCAGGAC 344
consensus_9522#1 CTCTCCTTCGACTCCACCCTCTCAGCCTTCCTTGAGCAAGAGCAAAACCCTGACCAGGAC 600
************************************************************
consensus_9522#0 ACCAAGCTACTTCCCTCCATTGATGAAACCTTTACTGNACCAGCATACTATCCAGCTGCC 404
consensus_9522#1 ACCAAGCTACTTCCCTCCATTGATGAAACCTTTACTGCACCAGCATACTATCCAGCTGCC 660
************************************* **********************
consensus_9522#0 ACCGAGGCCAACATAGAACAATTCAGCCAAATAATGGTTCCAGAGCATACAGATGCACCA 464
consensus_9522#1 ACCGAGGCCAACATAGAACAATTCAGCCAAATAATGGTTCCAGAGCATACAGATGCACCA 720
************************************************************
consensus_9522#0 ATGCCCCCAATGCAAACAAACAGGACTGCCAATGCCTTGCTGCCTCTAGCTTCAGGGTAT 524
consensus_9522#1 ATGCCCCCAATGCAAACAAACAGGACTGGCAATGCCTTGCTGNCTCTAGCTTCANGGTAT 780
**************************** ************* *********** *****
consensus_9522#0 GACGACGAGTGTTTCACAGCAGCACTAGCTGGAGGG-TACATGGGTCTGGATGGAACTCT 583
consensus_9522#1 GACGACGAGTGNTTCACAGCAGCACTAGCTGGANGGGTACATGGGTCTG----------- 829
*********** ********************* ** ************
consensus_9522#0 GTATGACCAAACAGGAGTAATGATTCCAAATTGCAATGTGGAGACACCACAAGTAGGATT 643
consensus_9522#1 ------------------------------------------------------------
consensus_9522#0 TTTCAACCATAATAGTACTAGTAACAATGGTATGGTGATGGATTTGAATAATTTTGGAGA 703
consensus_9522#1 ------------------------------------------------------------
consensus_9522#0 GTACCAGAGGATGATGGAAGGTGAAGGACTGACCAGAACATATAGCGACACAGATTCGAT 763
consensus_9522#1 ------------------------------------------------------------
consensus_9522#0 GCATGGGGCGTTTAATAACGCTGCAGAGATGCAGATGGGAGAAAACACCCAGCACATGGT 823
consensus_9522#1 ------------------------------------------------------------
consensus_9522#0 AACTGGATGCAATGATAGCCCACTAACGTTGCCTTCAACAGAAGGCTCAAGCTTGGAAGA 883
consensus_9522#1 ------------------------------------------------------------
consensus_9522#0 TACCCCCTACAAAGGTGTGCGTCTAACAGCTGAACAGAGAAAGGAAAAGATCTCCAGGTA 943
consensus_9522#1 ------------------------------------------------------------
consensus_9522#0 CATAAAGAAAAGGAACGAAAGGAACTTCAGCAAAAAAATAAAGTACGCTTGTAGAAAAAC 1003
consensus_9522#1 ------------------------------------------------------------
consensus_9522#0 CTTGGCGGATAGCAGGCCTCGGGTCCGCGGAAGGTTTGCCAAGAACGACGAACTCTGTGA 1063
consensus_9522#1 ------------------------------------------------------------
consensus_9522#0 AGCTACCAGATCAAGCTCCCAAGATTTTGAACAATATGAACATGTTGTGGGAATGAAGGG 1123
consensus_9522#1 ------------------------------------------------------------
consensus_9522#0 AGAAGACATGCTTGATTCTTCCAATATTTTGGCACATTTGAGTGGAATGAACCCTTACGG 1183
consensus_9522#1 ------------------------------------------------------------
consensus_9522#0 CTATAAGTACAACAGCACTGTGGAATCCTGGATATAATTCTCATAAACACACAAATTAAA 1243
consensus_9522#1 ------------------------------------------------------------
consensus_9522#0 GTGTGTTTTCCTTTCAATTGTGCAAGCATTAAACACAGTTTTCCCTTGCTCCCAGTAAAT 1303
consensus_9522#1 ------------------------------------------------------------
consensus_9522#0 AAGACTGATGCTTTAGAAGCTCTATTCGCAAGAGAAGTGCTTAGGTCAAGTTATTGTTTC 1363
consensus_9522#1 ------------------------------------------------------------
consensus_9522#0 TGCACACTACTGATTTGTAAATAGAATTGTTTCCTTGTCATAATAGAGATAACAAGTTTC 1423
consensus_9522#1 ------------------------------------------------------------
consensus_9522#0 AAAAAAAAAAA 1434
consensus_9522#1 -----------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||