These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9524#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 3840 fasta sequence [TGCTCTCCTCCTCCTCGTCGTCGTCTCCAACTCCGTCGCGGCCTCGCGCTCACCGCCGCCGGAATCCGGCTGACCTCCTCCGCTCCCGCATCGGGCGCTCGCCCCCCGGGTCTAGGTACTTGCCCTTGCCCCCCTGCCCATGCCCTTCGTCCCGATTCGAACATGTCAGATTTGGTTGGTTGGGTATCTTGGTGGTGGGTTGGTTCGCCAGGCGCCGAGGCCCAAGTTCTTTGTCCTGGAATGGTGGCTAGGGAGCTTTGTTTCGGGGTTCTATCTCTGTGATTTGGGTGCGGATGGGAGGAATTCTTCTTGGTTTGGGGGAATTTGGGGGGTTCCGGTGCTGATTTGAGTGTTTTCTGGCTGGTTCTTGGCGCTCCTTCGGGAGAATTTTGTGGAGCTCTCTGATGGGAGTGGTCTAGGTCGGGATCTCAGACTGGATGGCCTAATTTGATCTTATCAAGGTGAATTATGCCTTCTCAGTGAGGATTTAGGTGACTGTGGTTACAATTGCTGGGGTATTTGACCTAAAAACGAAGATGGGCGAGCAAAAGGGGCCTCCTATTGTCAAAATTTTAGTCATTGAACCAGTAGCACGAGAGCGGTGTTCTCGGTGTATTCTTTGCGTGTAGATTGGAGGATTGGCCGCAATGGCGTAGCAAAATACCCTTTAATGTATCTTTTGAGCTTCTGTTGATGCTTTTAAGCTTTTTGATTGTTGTAGTAGTGATTAACAATTTTGTAGGAAATGATCTACTGCGAGAAGGTACTGTAGTAAGGAAATTTAATTGGCAGTAAAGCTTCATTTTCTGAACTGTCCTTGTGCCCATTGATAATGCCATTAACGTAGAAAAAATAGCATTTCGATAGCATTTTAGTTAAATCGTGAGCACTTATCTAGTCTTGGGCCGTGGCCCTTTCATTTCTTTGCTTAAAGTTAACGAAGAAAGATGCTTCTCGGGTAATATTTAATAATGCACTATTCAGTGGATAAGGTGCACTTTTTAGATGGAGAAGAAAGTGTTTTTGTCACTGATTTGAGTTGAAAATGGTGAATTTTGAACCAATTTGTGGCATAAGAAAACCCTTTTGCCAACCTCCATCCATGTGTTAGCAATCATGGTAGGAGGATCAAGATTGAAGTAAAACTTAAAGAAGCCCTTTGCTTCAAATACCTTTCTTGTGCTGGTTACTTAGCATGTTCTTAAAGGATGGAATCCTTGGCCCAATTGCAGTATCAATTGATTCTCTCTAATTAAAAAGTTATGTGTTGTTCCTTGTTTCTCTTTAATTCTGGTAGATCTGGGAGGGGTCCTGACATGCTCCATGTGGGCCACTGGTTTTCCCTTTATCTCTTATCTGGCTCTTAGGTGTGACTTTTTTAATGGGTATTGTAGATCACATCTAATGTGCTTCATTGATTTGATTATTTAAAAGCCTTTGGTTGTTGCTATTCGTTTGTTTATGTTCCTACCCTTCTGTGGTTGGATCCCATAAAGTCTACCTGTGACTTCTGCTGCCTTGGTTGCTTGTTAGTCATTGTTGTGGATCTTAAGTTTGCTGACTTGGTTTAAGGAGGAAGGCTGCTGCAAGAGTAAAGCTGCAATTGGTTGGTAATGTTGCTCATGAGTTTTTCTTGTATAATTGCAACAACCAAGGAGGATCTTTTTGTTTGTTTTCCATTTTGACATTGTACAATGCCAGTTTGCTACTTCTTGCTTCTTTTTTATAAGTTTGCAGCCTTAGTTTAGTAAGTTTGCTTGGTTTCATATGCTTGATTTGACTCACAAAAATGATAACTGTGTGGATGCCTCTTTTCCTTGTTTGATTATGTGATTATATCAGGGTCTACATTCACTGCCTCTGTGGCGGGGTTCATCCCTATCATCATGTTAAATATTAAACTTTCCTCCTTATGCCAATTCAATGGAGCAGCAAATGGTGATTCCAATGCCAACAGAAATTGCTGCCTTTGGAAGTTGGACAGTTGTGATTTGTGTTTTTTGTTTCATGATTTTAGTTGCGCCCTTCAACTATCCATCCATAAAGCTGTGTTCATTTTTACGTTGCCTTGTGTGTTCTGTTTGACAAATGATGAAAATGACCAGATAAGGAATCAGGAAATGTTTTGACTTGGCCAAGGAAGATCCATCTGTGCAGCTCCTACTGACCCCCACCCCCACCCCCCAAAAAAAAGTCCTCAACACATTCTTGACAAAGTTGATTAATCTTTTTCCCTTTTGTTTTGCTAAATTGTAATATAAAGAATTAACCTTGTACATATTTTCTCTCTTTAATGAAATTACACTACTAGGCAAAGCCCTTGTAGTTTTCCCAGTCAAAAAAAAATTGTAATCTAAAGAAGGTTAATTTCTGTGTTTATCTTGTATTTTAATATCCTTGCAGATCCCTGGCCTGTTTTTGTTTATAAGAAAACAACTGTATCAACAATTCATGCAAATCACGTTATGGTTTCTTTCTGGACAGGTTTCCGAAGAAATGGCAAGAAGTGCAAGGGCAAGGAGGCATGTGGCTCGTCAGCTTAGATCCGCACCGTATCCCACCCCTTCGTACCGCTGGAAAGCAATGAAAGAATCAAACCGAAAGAAAACTCTGCCAGCTGCACAGAAGATGGACTGGGAAGATGCGAACTGCTCTGTGTGCATGGAATACCCGCATAATGCTGTTCTCCTCCTTTGTTCTTCGCATGATAAAGGTTGTCGCCCTTACATGTGTGGAACTAGCCACCGCCACTCAAATTGCCTTGATCAATTCAAGAAGGCTTACACCAAGGGTGCATTGCTAGAGGAACTTCCTGCCAACACTGTTGGCACGAACTTGGACTCGACGCCATTGATTGCAGGTGAAAAAAATGAGTCTGTTGATCTTGCATGTCCACTGTGTCGTGGCAAGGTGAAGGGATGGACTATAGTAGAACCAGCTCGAAGTTATCTCAATGGGAAAAGGAGGACATGCATGCAGGATGGTTGCTCATTTGTAGGAACCTACAAGGAACTCCGCAAGCATGTGAAGTCAGAGCACCCTCTTGCAAAGCCAAGGGAAGTCGATCCCATCCTTGAACAGAAGTGGAGATTGCTAGAGATTGAAAGAGAGAGGCAAGATGCACTCAGTACGATAACAGCAACTATGGGGAGGGCGATTGTTTTCGGTGATTATGTGCTAGACTTGGAAGATGAAGATGATTTAGATGATGTAGAAAGTGATGAGGATGACAATGCCAACGGACACGGGACAGATAACACTAGACGAATGTTAATGTTTCTAATGCGCCAAGTTGCTCGGCATCATCAAAACCAAAGGCTTCAGAATGCAATTGGTACAACTGGCGGTGCCGAGGACAATTATGCGGTGAGCAGTGGTGCAAATGCAACCACGCCTTACCATTACCCCTTGGAAGGCGACGATGAGGATGATTTGGTTATGGCCGGAGGCGGAAGCACCGGTATGGTTAGACCAGAGAGGCGGCGTCGGCGCCGCCGTAGAAACCGCGAGAGGTTGTTCTTAGGTGCTAATTGAGACAACAGGGGCTTTACCACTGGAGGAGTACATTGCACAATTGGTTCTCTGGTGCATAGCATTCATCAATTTCAACCTCAATTTACTTGTTCATGATCATGTACCAAAGTAGTTGTCTTAACCTTTTAGCTCATTGTTTCACTTCAATGTATGCCATCTCACATTCATTGTTGAAAAGGAAAATACCGCACCCATCTTGTGCGGTTTGTGTAGCCTTTATTTCCAGTTTTTCAGAAGCTCTGCTAAATATTAATCCAGTGGGGATCGATTTTAGATCTCACCAGCTTCAGATATTCAGTTGTGCTT] [+] EMBL AK101234 [TGCTCTCCTCCTCCTCGTCGTCGTCTCCAACTCCGTCGCGGCCTCGCGCTCACCGCCGCCGGAATCCGGCTGACCTCCTCCGCTCCCGCATCGGGCGCTCGCCCCCCGGGTCTAGGTACTTGCCCTTGCCCCCCTGCCCATGCCCTTCGTCCCGATTCGAACATGTCAGATTTGGTTGGTTGGGTATCTTGGTGGTGGGTTGGTTCGCCAGGCGCCGAGGCCCAAGTTCTTTGTCCTGGAATGGTGGCTAGGGAGCTTTGTTTCGGGGTTCTATCTCTGTGATTTGGGTGCGGATGGGAGGAATTCTTCTTGGTTTGGGGGAATTTGGGGGGTTCCGGTGCTGATTTGAGTGTTTTCTGGCTGGTTCTTGGCGCTCCTTCGGGAGAATTTTGTGGAGCTCTCTGATGGGAGTGGTCTAGGTCGGGATCTCAGACTGGATGGCCTAATTTGATCTTATCAAGGTGAATTATGCCTTCTCAGTGAGGATTTAGGTGACTGTGGTTACAATTGCTGGGGTATTTGACCTAAAAACGAAGATGGGCGAGCAAAAGGGGCCTCCTATTGTCAAAATTTTAGTCATTGAACCAGTAGCACGAGAGCGGTGTTCTCGGTGTATTCTTTGCGTGTAGATTGGAGGATTGGCCGCAATGGCGTAGCAAAATACCCTTTAATGTATCTTTTGAGCTTCTGTTGATGCTTTTAAGCTTTTTGATTGTTGTAGTAGTGATTAACAATTTTGTAGGAAATGATCTACTGCGAGAAGGTACTGTAGTAAGGAAATTTAATTGGCAGTAAAGCTTCATTTTCTGAACTGTCCTTGTGCCCATTGATAATGCCATTAACGTAGAAAAAATAGCATTTCGATAGCATTTTAGTTAAATCGTGAGCACTTATCTAGTCTTGGGCCGTGGCCCTTTCATTTCTTTGCTTAAAGTTAACGAAGAAAGATGCTTCTCGGGTAATATTTAATAATGCACTATTCAGTGGATAAGGTGCACTTTTTAGATGGAGAAGAAAGTGTTTTTGTCACTGATTTGAGTTGAAAATGGTGAATTTTGAACCAATTTGTGGCATAAGAAAACCCTTTTGCCAACCTCCATCCATGTGTTAGCAATCATGGTAGGAGGATCAAGATTGAAGTAAAACTTAAAGAAGCCCTTTGCTTCAAATACCTTTCTTGTGCTGGTTACTTAGCATGTTCTTAAAGGATGGAATCCTTGGCCCAATTGCAGTATCAATTGATTCTCTCTAATTAAAAAGTTATGTGTTGTTCCTTGTTTCTCTTTAATTCTGGTAGATCTGGGAGGGGTCCTGACATGCTCCATGTGGGCCACTGGTTTTCCCTTTATCTCTTATCTGGCTCTTAGGTGTGACTTTTTTAATGGGTATTGTAGATCACATCTAATGTGCTTCATTGATTTGATTATTTAAAAGCCTTTGGTTGTTGCTATTCGTTTGTTTATGTTCCTACCCTTCTGTGGTTGGATCCCATAAAGTCTACCTGTGACTTCTGCTGCCTTGGTTGCTTGTTAGTCATTGTTGTGGATCTTAAGTTTGCTGACTTGGTTTAAGGAGGAAGGCTGCTGCAAGAGTAAAGCTGCAATTGGTTGGTAATGTTGCTCATGAGTTTTTCTTGTATAATTGCAACAACCAAGGAGGATCTTTTTGTTTGTTTTCCATTTTGACATTGTACAATGCCAGTTTGCTACTTCTTGCTTCTTTTTTATAAGTTTGCAGCCTTAGTTTAGTAAGTTTGCTTGGTTTCATATGCTTGATTTGACTCACAAAAATGATAACTGTGTGGATGCCTCTTTTCCTTGTTTGATTATGTGATTATATCAGGGTCTACATTCACTGCCTCTGTGGCGGGGTTCATCCCTATCATCATGTTAAATATTAAACTTTCCTCCTTATGCCAATTCAATGGAGCAGCAAATGGTGATTCCAATGCCAACAGAAATTGCTGCCTTTGGAAGTTGGACAGTTGTGATTTGTGTTTTTTGTTTCATGATTTTAGTTGCGCCCTTCAACTATCCATCCATAAAGCTGTGTTCATTTTTACGTTGCCTTGTGTGTTCTGTTTGACAAATGATGAAAATGACCAGATAAGGAATCAGGAAATGTTTTGACTTGGCCAAGGAAGATCCATCTGTGCAGCTCCTACTGACCCCCACCCCCACCCCCCAAAAAAAAGTCCTCAACACATTCTTGACAAAGTTGATTAATCTTTTTCCCTTTTGTTTTGCTAAATTGTAATATAAAGAATTAACCTTGTACATATTTTCTCTCTTTAATGAAATTACACTACTAGGCAAAGCCCTTGTAGTTTTCCCAGTCAAAAAAAAATTGTAATCTAAAGAAGGTTAATTTCTGTGTTTATCTTGTATTTTAATATCCTTGCAGATCCCTGGCCTGTTTTTGTTTATAAGAAAACAACTGTATCAACAATTCATGCAAATCACGTTATGGTTTCTTTCTGGACAGGTTTCCGAAGAAATGGCAAGAAGTGCAAGGGCAAGGAGGCATGTGGCTCGTCAGCTTAGATCCGCACCGTATCCCACCCCTTCGTACCGCTGGAAAGCAATGAAAGAATCAAACCGAAAGAAAACTCTGCCAGCTGCACAGAAGATGGACTGGGAAGATGCGAACTGCTCTGTGTGCATGGAATACCCGCATAATGCTGTTCTCCTCCTTTGTTCTTCGCATGATAAAGGTTGTCGCCCTTACATGTGTGGAACTAGCCACCGCCACTCAAATTGCCTTGATCAATTCAAGAAGGCTTACACCAAGGGTGCATTGCTAGAGGAACTTCCTGCCAACACTGTTGGCACGAACTTGGACTCGACGCCATTGATTGCAGGTGAAAAAAATGAGTCTGTTGATCTTGCATGTCCACTGTGTCGTGGCAAGGTGAAGGGATGGACTATAGTAGAACCAGCTCGAAGTTATCTCAATGGGAAAAGGAGGACATGCATGCAGGATGGTTGCTCATTTGTAGGAACCTACAAGGAACTCCGCAAGCATGTGAAGTCAGAGCACCCTCTTGCAAAGCCAAGGGAAGTCGATCCCATCCTTGAACAGAAGTGGAGATTGCTAGAGATTGAAAGAGAGAGGCAAGATGCACTCAGTACGATAACAGCAACTATGGGGAGGGCGATTGTTTTCGGTGATTATGTGCTAGACTTGGAAGATGAAGATGATTTAGATGATGTAGAAAGTGATGAGGATGACAATGCCAACGGACACGGGACAGATAACACTAGACGAATGTTAATGTTTCTAATGCGCCAAGTTGCTCGGCATCATCAAAACCAAAGGCTTCAGAATGCAATTGGTACAACTGGCGGTGCCGAGGACAATTATGCGGTGAGCAGTGGTGCAAATGCAACCACGCCTTACCATTACCCCTTGGAAGGCGACGATGAGGATGATTTGGTTATGGCCGGAGGCGGAAGCACCGGTATGGTTAGACCAGAGAGGCGGCGTCGGCGCCGCCGTAGAAACCGCGAGAGGTTGTTCTTAGGTGCTAATTGAGACAACAGGGGCTTTACCACTGGAGGAGTACATTGCACAATTGGTTCTCTGGTGCATAGCATTCATCAATTTCAACCTCAATTTACTTGTTCATGATCATGTACCAAAGTAGTTGTCTTAACCTTTTAGCTCATTGTTTCACTTCAATGTATGCCATCTCACATTCATTGTTGAAAAGGAAAATACCGCACCCATCTTGTGCGGTTTGTGTAGCCTTTATTTCCAGTTTTTCAGAAGCTCTGCTAAATATTAATCCAGTGGGGATCGATTTTAGATCTCACCAGCTTCAGATATTCAGTTGTGCTT] consensusID : consensus_9524#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1469 fasta sequence [GCCATTTTCTCTCTCGCTCGGTTTGCTGCTCTCCTCCTCCTCGTCGTCGTCTCCAACTCCGTCGCGGCCTCGCGCTCACCGCCGCCGGAATCCGGCTGACCTCCTCCGCTCCCGCATCGGGCGCTCGCCCCCCGGGTCTAGGTTTCCGAAGAAATGGCAAGAAGTGCAAGGGCAAGGAGGCATGTGGCTCGTCAGCTTAGATCCGCACCGTATCCCATCCCTTCGTACCGCTGGAAAGCAATGAAAGAATCAAACCGAAAGAAAACTCTGCCAGCTGCACAGAAGATGGACTGGGAAGATGCCAACTGCTCTGTGTGCATGGAATACCCGCATAATGCTGTTCTCCTCCTTTGTTCTTCGCATGATAAAGGTTGTCGCCCTTACATGTGTGGAACTAGCCACCGCCACTCAAATTGCCTTGATCAATTCAAGAAGGCTTACACCAAGGGTGCATTGCTAGAGGAACTTCCTGCCAACACTGTTGGCACGAACTTGGACTCGACGCCATTGATTGCAGGTGAAAAAAATGAGTCTGTTGATCTTGCATGTCCACTGTGTCGTGGCAAGGTGAAGGGATGGACTATAGTAGAACCAGCTCGAAGTTATCTCAATGGGAAAAGGAGGACATGCATGCAGGATGGTTGCTCATTTGTAGGAACCTACAAGGAACTCCGCAAGCATGTGAAGTCAGAGCACCCTCTTGCAAAGCCGAGGGAAGTCGATCCCATCCTTGAACAGAAGTGGAGATTGCTAGAGATTGAAAGAGAGAGGCAAGATGCACTCAGTACGATAACAGCAACTATGGGGAGGGCGATTGTTTTCGGTGATTATGTGCTAGACTTGGAAGATGAAGATGATTTAGATGATGTAGAAAGTGATGAGGATGACAATGCCAACGGACACGGGACAGATAACACTAGACGAATGTTAATGTTTCTAATGCGCCAAGTTGCTCGGCATCATCAAAACCAAAGGCTTCAGAATGCAATTGGTACAACTGGCGGTGCCGAGGACAATTATGCGGTGAGCAGTGGTGCAAATGCAACCACGCCTTA-CCATTACCCCTTG-GAAGGCGACGATGAGGATGATTTGGTTATGGCCGGAGGCGGAAGCACCGGTATGGTTAGACCAGAG-AGGCGGC-GTCGGCGCCGCCGT-AGAAACCGCGAGAGG-TTGTTCTTAGGTGCT-AATTGAGACAACAGGGGCTTTACCACTGGAGGAGTACATTGCACAATTGGTTCTCTGGTGCATAGCATTCATCAATTTCAACCTCAATTTACTTGTTCATGATCATGTACCAAAGTAGTTGTCTTAACCTTTTAGCTCATTGTTTCACTTCAATGTATGCCATCTCACATTCATTGTTGAAAAGGAAAATACCGCACCCATCTTGTGCGGTTTGTGTAGCCTTTATTTCCAGTTTTTCAGAAGCTCTGCTAAATATTAATCCAGTGGGGATCGATTTTAGATCT] [+] EMBL AK066977 [GCCATTTTCTCTCTCGCTCGGTTTGCTGCTCTCCTCCTCCTCGTCGTCGTCTCCAACTCCGTCGCGGCCTCGCGCTCACCGCCGCCGGAATCCGGCTGACCTCCTCCGCTCCCGCATCGGGCGCTCGCCCCCCGGGTCTAGGTTTCCGAAGAAATGGCAAGAAGTGCAAGGGCAAGGAGGCATGTGGCTCGTCAGCTTAGATCCGCACCGTATCCCATCCCTTCGTACCGCTGGAAAGCAATGAAAGAATCAAACCGAAAGAAAACTCTGCCAGCTGCACAGAAGATGGACTGGGAAGATGCCAACTGCTCTGTGTGCATGGAATACCCGCATAATGCTGTTCTCCTCCTTTGTTCTTCGCATGATAAAGGTTGTCGCCCTTACATGTGTGGAACTAGCCACCGCCACTCAAATTGCCTTGATCAATTCAAGAAGGCTTACACCAAGGGTGCATTGCTAGAGGAACTTCCTGCCAACACTGTTGGCACGAACTTGGACTCGACGCCATTGATTGCAGGTGAAAAAAATGAGTCTGTTGATCTTGCATGTCCACTGTGTCGTGGCAAGGTGAAGGGATGGACTATAGTAGAACCAGCTCGAAGTTATCTCAATGGGAAAAGGAGGACATGCATGCAGGATGGTTGCTCATTTGTAGGAACCTACAAGGAACTCCGCAAGCATGTGAAGTCAGAGCACCCTCTTGCAAAGCCGAGGGAAGTCGATCCCATCCTTGAACAGAAGTGGAGATTGCTAGAGATTGAAAGAGAGAGGCAAGATGCACTCAGTACGATAACAGCAACTATGGGGAGGGCGATTGTTTTCGGTGATTATGTGCTAGACTTGGAAGATGAAGATGATTTAGATGATGTAGAAAGTGATGAGGATGACAATGCCAACGGACACGGGACAGATAACACTAGACGAATGTTAATGTTTCTAATGCGCCAAGTTGCTCGGCATCATCAAAACCAAAGGCTTCAGAATGCAATTGGTACAACTGGCGGTGCCGAGGACAATTATGCGGTGAGCAGTGGTGCAAATGCAACCACGCCTTA CCATTACCCCTTG GAAGGCGACGATGAGGATGATTTGGTTATGGCCGGAGGCGGAAGCACCGGTATGGTTAGACCAGAG AGGCGGC GTCGGCGCCGCCGT AGAAACCGCGAGAGG TTGTTCTTAGGTGCT AATTGAGACAACAGGGGCTTTACCACTGGAGGAGTACATTGCACAATTGGTTCTCTGGTGCATAGCATTCATCAATTTCAACCTCAATTTACTTGTTCATGATCATGTACCAAAGTAGTTGTCTTAACCTTTTAGCTCATTGTTTCACTTCAATGTATGCCATCTCACATTCATTGTTGAAAAGGAAAATACCGCACCCATCTTGTGCGGTTTGTGTAGCCTTTATTTCCAGTTTTTCAGAAGCTCTGCTAAATATTAATCCAGTGGGGATCGATTTTAGATCT] [+] EMBL OSS3790A [ CTCCTCGTCGTCGTCTCCAACTCCGTCGCGGCCTCG GCTCACCGCCGCCGGAATCCGGCTGACCTCCTCCGCTCCCGCATCGGGCGCTCGCCCCCCGGGTCTAGGTTTCCGAAGAAATGGCAAGAAGTGCAAGGGCAAGGAGGCATGTTGCTCGTCAGCTTAGATCCGCACCGTATCCCATCCCTTCGTACCGCTGGAAAGCAATGAAAGAATCAAACCGAAAGAAAACTCTGNCAGCTGCACAGAAGATGGACTGGGAAGATGCCAACTGCTCTGTGTGCATGnga ] [+] EMBL OSC9671 [ GATGATTTAGATGATGTAGAAAGTGATGAGGATGACAATGCCAACGGACACGGGACAGATAACACTAGACGAATGTTAATGTTTCTAATGCGCCAAGTTGCTCGGCATCATCAAAACCAAAGGCTTCAGAATGCAATTGGTACAACTGGCGGTGCCGAGGACAATTATGCGGTGAGCAGTGGTGCAAATGCAACCACGGCTTA CCATTACCCCTTG GAAGGCGACGATGAGGATGATTTGGTTATGGCCGGAGGGGAAAGCACCGGTATGGTTAGACCAGAG AGGCGGCGGTTGGCGC NCGTAAGAAANCGCGAGAGGTTTNTTCTTAGGGTCTAAATTGAG ] [+] EMBL AU086050 [ GTGGTGCAAATGCAACCACGCCTTACCCATTACCCCTTGNAAAGGCGACGATGAGGATGATTTGGTTNTGGCCGGAGGCGGAAGCACCGGTATGGTTAGACCAGAGNAGGCNGC GTCGGCGCCGCCGT AGAAACCGCGAGAGG TTGTTCTTAGGTGCT AATTGAGACAACAGGGGCTTTACCACTGGAGGAGTACATTGCACAATTGGTTCTCTGGTGCATAGCATTCATCAATTTCAACCTCAATTTACTTGTTCATGATCATGTACCAAAGTAGTTGTCTTAACCTTTTAGCTCATTGTTTCACTTCAATGTATGCCATCTCACATTCATTGTTGAAAAGGAAAATACCGCACCCATCTTGTGCGGTTTGTGTAaaaa ] consensusID : consensus_9524#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 228 fasta sequence [ACCTCCTCCGCTCCCGCATCGGGCGCTCGCCCCCCGGGTCTAGNTGTCCGAAGAAATGGCAAGAAGTGCAAGGGCAAGTGAGTTATTATGGCTCNTCAGCGTAGATCCAGGACCGTTAGCCCATTCCGTNCGTACCNNTGGNAAAGCAATGGAAAGAATTCAAACCGGAAAGAAANACTNTTGTCCAGGCTNGCACAGGANGGATTGTGACTTNGGGNAGATNGCCAA] [+] EMBL D42761 [ACCTCCTCCGCTCCCGCATCGGGCGCTCGCCCCCCGGGTCTAGNTGTCCGAAGAAATGGCAAGAAGTGCAAGGGCAAGTGAGTTATTATGGCTCNTCAGCGTAGATCCAGGACCGTTAGCCCATTCCGTNCGTACCNNTGGNAAAGCAATGGAAAGAATTCAAACCGGAAAGAAANACTNTTGTCCAGGCTNGCACAGGANGGATTGTGACTTNGGGNAGATNGCCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9524#0 TGCTCTCCTCCTCCTCGTCGTCGTCTCCAACTCCGTCGCGGCCTCGCGCTCACCGCCGCC 60 consensus_9524#1 ------------------------------------------------------------ consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 GGAATCCGGCTGACCTCCTCCGCTCCCGCATCGGGCGCTCGCCCCCCGGGTCTAGGTACT 120 consensus_9524#1 ------------------------------------------------------------ consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 TGCCCTTGCCCCCCTGCCCATGCCCTTCGTCCCGATTCGAACATGTCAGATTTGGTTGGT 180 consensus_9524#1 ------------------------------------------------------------ consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 TGGGTATCTTGGTGGTGGGTTGGTTCGCCAGGCGCCGAGGCCCAAGTTCTTTGTCCTGGA 240 consensus_9524#1 ------------------------------------------------------------ consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 ATGGTGGCTAGGGAGCTTTGTTTCGGGGTTCTATCTCTGTGATTTGGGTGCGGATGGGAG 300 consensus_9524#1 ------------------------------------------------------------ consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 GAATTCTTCTTGGTTTGGGGGAATTTGGGGGGTTCCGGTGCTGATTTGAGTGTTTTCTGG 360 consensus_9524#1 ------------------------------------------------------------ consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 CTGGTTCTTGGCGCTCCTTCGGGAGAATTTTGTGGAGCTCTCTGATGGGAGTGGTCTAGG 420 consensus_9524#1 ------------------------------------------------------------ consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 TCGGGATCTCAGACTGGATGGCCTAATTTGATCTTATCAAGGTGAATTATGCCTTCTCAG 480 consensus_9524#1 ------------------------------------------------------------ consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 TGAGGATTTAGGTGACTGTGGTTACAATTGCTGGGGTATTTGACCTAAAAACGAAGATGG 540 consensus_9524#1 ------------------------------------------------------------ consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 GCGAGCAAAAGGGGCCTCCTATTGTCAAAATTTTAGTCATTGAACCAGTAGCACGAGAGC 600 consensus_9524#1 ------------------------------------------------------------ consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 GGTGTTCTCGGTGTATTCTTTGCGTGTAGATTGGAGGATTGGCCGCAATGGCGTAGCAAA 660 consensus_9524#1 ------------------------------------------------------------ consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 ATACCCTTTAATGTATCTTTTGAGCTTCTGTTGATGCTTTTAAGCTTTTTGATTGTTGTA 720 consensus_9524#1 ------------------------------------------------------------ consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 GTAGTGATTAACAATTTTGTAGGAAATGATCTACTGCGAGAAGGTACTGTAGTAAGGAAA 780 consensus_9524#1 ------------------------------------------------------------ consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 TTTAATTGGCAGTAAAGCTTCATTTTCTGAACTGTCCTTGTGCCCATTGATAATGCCATT 840 consensus_9524#1 ------------------------------------------------------------ consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 AACGTAGAAAAAATAGCATTTCGATAGCATTTTAGTTAAATCGTGAGCACTTATCTAGTC 900 consensus_9524#1 ------------------------------------------------------------ consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 TTGGGCCGTGGCCCTTTCATTTCTTTGCTTAAAGTTAACGAAGAAAGATGCTTCTCGGGT 960 consensus_9524#1 ------------------------------------------------------------ consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 AATATTTAATAATGCACTATTCAGTGGATAAGGTGCACTTTTTAGATGGAGAAGAAAGTG 1020 consensus_9524#1 ------------------------------------------------------------ consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 TTTTTGTCACTGATTTGAGTTGAAAATGGTGAATTTTGAACCAATTTGTGGCATAAGAAA 1080 consensus_9524#1 ------------------------------------------------------------ consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 ACCCTTTTGCCAACCTCCATCCATGTGTTAGCAATCATGGTAGGAGGATCAAGATTGAAG 1140 consensus_9524#1 ------------------------------------------------------------ consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 TAAAACTTAAAGAAGCCCTTTGCTTCAAATACCTTTCTTGTGCTGGTTACTTAGCATGTT 1200 consensus_9524#1 ------------------------------------------------------------ consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 CTTAAAGGATGGAATCCTTGGCCCAATTGCAGTATCAATTGATTCTCTCTAATTAAAAAG 1260 consensus_9524#1 ------------------------------------------------------------ consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 TTATGTGTTGTTCCTTGTTTCTCTTTAATTCTGGTAGATCTGGGAGGGGTCCTGACATGC 1320 consensus_9524#1 ------------------------------------------------------------ consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 TCCATGTGGGCCACTGGTTTTCCCTTTATCTCTTATCTGGCTCTTAGGTGTGACTTTTTT 1380 consensus_9524#1 ------------------------------------------------------------ consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 AATGGGTATTGTAGATCACATCTAATGTGCTTCATTGATTTGATTATTTAAAAGCCTTTG 1440 consensus_9524#1 ------------------------------------------------------------ consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 GTTGTTGCTATTCGTTTGTTTATGTTCCTACCCTTCTGTGGTTGGATCCCATAAAGTCTA 1500 consensus_9524#1 ------------------------------------------------------------ consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 CCTGTGACTTCTGCTGCCTTGGTTGCTTGTTAGTCATTGTTGTGGATCTTAAGTTTGCTG 1560 consensus_9524#1 ------------------------------------------------------------ consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 ACTTGGTTTAAGGAGGAAGGCTGCTGCAAGAGTAAAGCTGCAATTGGTTGGTAATGTTGC 1620 consensus_9524#1 ------------------------------------------------------------ consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 TCATGAGTTTTTCTTGTATAATTGCAACAACCAAGGAGGATCTTTTTGTTTGTTTTCCAT 1680 consensus_9524#1 ------------------------------------------------------------ consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 TTTGACATTGTACAATGCCAGTTTGCTACTTCTTGCTTCTTTTTTATAAGTTTGCAGCCT 1740 consensus_9524#1 ------------------------------------------------------------ consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 TAGTTTAGTAAGTTTGCTTGGTTTCATATGCTTGATTTGACTCACAAAAATGATAACTGT 1800 consensus_9524#1 ------------------------------------------------------------ consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 GTGGATGCCTCTTTTCCTTGTTTGATTATGTGATTATATCAGGGTCTACATTCACTGCCT 1860 consensus_9524#1 ------------------------------------------------------------ consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 CTGTGGCGGGGTTCATCCCTATCATCATGTTAAATATTAAACTTTCCTCCTTATGCCAAT 1920 consensus_9524#1 ------------------------------------------------------------ consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 TCAATGGAGCAGCAAATGGTGATTCCAATGCCAACAGAAATTGCTGCCTTTGGAAGTTGG 1980 consensus_9524#1 ------------------------------------------------------------ consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 ACAGTTGTGATTTGTGTTTTTTGTTTCATGATTTTAGTTGCGCCCTTCAACTATCCATCC 2040 consensus_9524#1 ------------------------------------------------------------ consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 ATAAAGCTGTGTTCATTTTTACGTTGCCTTGTGTGTTCTGTTTGACAAATGATGAAAATG 2100 consensus_9524#1 ------------------------------------------------------------ consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 ACCAGATAAGGAATCAGGAAATGTTTTGACTTGGCCAAGGAAGATCCATCTGTGCAGCTC 2160 consensus_9524#1 ------------------------------------------------------------ consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 CTACTGACCCCCACCCCCACCCCCCAAAAAAAAGTCCTCAACACATTCTTGACAAAGTTG 2220 consensus_9524#1 ------------------------------------------------------------ consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 ATTAATCTTTTTCCCTTTTGTTTTGCTAAATTGTAATATAAAGAATTAACCTTGTACATA 2280 consensus_9524#1 ------------------------------------------------------------ consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 TTTTCTCTCTTTAATGAAATTACACTACTAGGCAAAGCCCTTGTAGTTTTCCCAGTCAAA 2340 consensus_9524#1 ------------------------------------------------------------ consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 AAAAAATTGTAATCTAAAGAAGGTTAATTTCTGTGTTTATCTTGTATTTTAATATCCTTG 2400 consensus_9524#1 --GCCATTTTCTCTCTCGCTCGGTTTGCTGCTCTCCTCCTCCT-CGTCGTCGTCTCCAAC 57 consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 CAGATCCCTGGCCTGTTTTTGTT--TATAAGAAAACAACTGTATCAACAATTCATGCAAA 2458 consensus_9524#1 TCCGTCGCGGCCTCGCGCTCACCGCCGCCGGAATCCGGCTG-ACCTCCTCCGCTCCCGCA 116 consensus_9524#2 ------------------------------------------ACCTCCTCCGCTCCCGCA 18 * * * * * * consensus_9524#0 TCACGTTATGGTTTCTTTCTGGACAGGTTTCCGAAGAAATGGCAAGAAGTGCAAGGGCAA 2518 consensus_9524#1 TCGGGCGCTCGCCCCCCGG-GTCTAGGTTTCCGAAGAAATGGCAAGAAGTGCAAGGGCAA 175 consensus_9524#2 TCGGGCGCTCGCCCCCCGG-GTCTAGNTGTCCGAAGAAATGGCAAGAAGTGCAAGGGCAA 77 ** * * * * * ** * ******************************* consensus_9524#0 G-GAGGCAT-GTGGCTCGTCAGCTTAGATCC-GCACCGT-ATCCCACCCC-TTCGTACCG 2573 consensus_9524#1 G-GAGGCAT-GTGGCTCGTCAGCTTAGATCC-GCACCGT-ATCCCATCCC-TTCGTACCG 230 consensus_9524#2 GTGAGTTATTATGGCTCNTCAGCGTAGATCCAGGACCGTTAGCCCATTCCGTNCGTACCN 137 * *** ** ****** ***** ******* * ***** * **** ** * ****** consensus_9524#0 CTGGAAA-GCAATGAAAGAA--TCAAACCGAAAGAAAACTCTG----CCAGCTGCACAGA 2626 consensus_9524#1 CTGGAAA-GCAATGAAAGAA--TCAAACCGAAAGAAAACTCTG----CCAGCTGCACAGA 283 consensus_9524#2 NTGGNAAAGCAATGGAAAGAATTCAAACCGGAAAGAAANACTNTTGTCCAGGCTNGCACA 197 *** ** ****** ** * ******** ** *** ** **** ** * consensus_9524#0 AGATGGACTGGGAAGATGCGAACTGCTCTGTGTGCATGGAATACCCGCATAATGCTGTTC 2686 consensus_9524#1 AGATGGACTGGGAAGATGCCAACTGCTCTGTGTGCATGGAATACCCGCATAATGCTGTTC 343 consensus_9524#2 GGANGGATTGTGACTTNGGGNAGATNGCCAA----------------------------- 228 ** *** ** ** * * * consensus_9524#0 TCCTCCTTTGTTCTTCGCATGATAAAGGTTGTCGCCCTTACATGTGTGGAACTAGCCACC 2746 consensus_9524#1 TCCTCCTTTGTTCTTCGCATGATAAAGGTTGTCGCCCTTACATGTGTGGAACTAGCCACC 403 consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 GCCACTCAAATTGCCTTGATCAATTCAAGAAGGCTTACACCAAGGGTGCATTGCTAGAGG 2806 consensus_9524#1 GCCACTCAAATTGCCTTGATCAATTCAAGAAGGCTTACACCAAGGGTGCATTGCTAGAGG 463 consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 AACTTCCTGCCAACACTGTTGGCACGAACTTGGACTCGACGCCATTGATTGCAGGTGAAA 2866 consensus_9524#1 AACTTCCTGCCAACACTGTTGGCACGAACTTGGACTCGACGCCATTGATTGCAGGTGAAA 523 consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 AAAATGAGTCTGTTGATCTTGCATGTCCACTGTGTCGTGGCAAGGTGAAGGGATGGACTA 2926 consensus_9524#1 AAAATGAGTCTGTTGATCTTGCATGTCCACTGTGTCGTGGCAAGGTGAAGGGATGGACTA 583 consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 TAGTAGAACCAGCTCGAAGTTATCTCAATGGGAAAAGGAGGACATGCATGCAGGATGGTT 2986 consensus_9524#1 TAGTAGAACCAGCTCGAAGTTATCTCAATGGGAAAAGGAGGACATGCATGCAGGATGGTT 643 consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 GCTCATTTGTAGGAACCTACAAGGAACTCCGCAAGCATGTGAAGTCAGAGCACCCTCTTG 3046 consensus_9524#1 GCTCATTTGTAGGAACCTACAAGGAACTCCGCAAGCATGTGAAGTCAGAGCACCCTCTTG 703 consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 CAAAGCCAAGGGAAGTCGATCCCATCCTTGAACAGAAGTGGAGATTGCTAGAGATTGAAA 3106 consensus_9524#1 CAAAGCCGAGGGAAGTCGATCCCATCCTTGAACAGAAGTGGAGATTGCTAGAGATTGAAA 763 consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 GAGAGAGGCAAGATGCACTCAGTACGATAACAGCAACTATGGGGAGGGCGATTGTTTTCG 3166 consensus_9524#1 GAGAGAGGCAAGATGCACTCAGTACGATAACAGCAACTATGGGGAGGGCGATTGTTTTCG 823 consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 GTGATTATGTGCTAGACTTGGAAGATGAAGATGATTTAGATGATGTAGAAAGTGATGAGG 3226 consensus_9524#1 GTGATTATGTGCTAGACTTGGAAGATGAAGATGATTTAGATGATGTAGAAAGTGATGAGG 883 consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 ATGACAATGCCAACGGACACGGGACAGATAACACTAGACGAATGTTAATGTTTCTAATGC 3286 consensus_9524#1 ATGACAATGCCAACGGACACGGGACAGATAACACTAGACGAATGTTAATGTTTCTAATGC 943 consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 GCCAAGTTGCTCGGCATCATCAAAACCAAAGGCTTCAGAATGCAATTGGTACAACTGGCG 3346 consensus_9524#1 GCCAAGTTGCTCGGCATCATCAAAACCAAAGGCTTCAGAATGCAATTGGTACAACTGGCG 1003 consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 GTGCCGAGGACAATTATGCGGTGAGCAGTGGTGCAAATGCAACCACGCCTTACCATTACC 3406 consensus_9524#1 GTGCCGAGGACAATTATGCGGTGAGCAGTGGTGCAAATGCAACCACGCCTTACCATTACC 1063 consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 CCTTGGAAGGCGACGATGAGGATGATTTGGTTATGGCCGGAGGCGGAAGCACCGGTATGG 3466 consensus_9524#1 CCTTGGAAGGCGACGATGAGGATGATTTGGTTATGGCCGGAGGCGGAAGCACCGGTATGG 1123 consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 TTAGACCAGAGAGGCGGCGTCGGCGCCGCCGTAGAAACCGCGAGAGGTTGTTCTTAGGTG 3526 consensus_9524#1 TTAGACCAGAGAGGCGGCGTCGGCGCCGCCGTAGAAACCGCGAGAGGTTGTTCTTAGGTG 1183 consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 CTAATTGAGACAACAGGGGCTTTACCACTGGAGGAGTACATTGCACAATTGGTTCTCTGG 3586 consensus_9524#1 CTAATTGAGACAACAGGGGCTTTACCACTGGAGGAGTACATTGCACAATTGGTTCTCTGG 1243 consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 TGCATAGCATTCATCAATTTCAACCTCAATTTACTTGTTCATGATCATGTACCAAAGTAG 3646 consensus_9524#1 TGCATAGCATTCATCAATTTCAACCTCAATTTACTTGTTCATGATCATGTACCAAAGTAG 1303 consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 TTGTCTTAACCTTTTAGCTCATTGTTTCACTTCAATGTATGCCATCTCACATTCATTGTT 3706 consensus_9524#1 TTGTCTTAACCTTTTAGCTCATTGTTTCACTTCAATGTATGCCATCTCACATTCATTGTT 1363 consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 GAAAAGGAAAATACCGCACCCATCTTGTGCGGTTTGTGTAGCCTTTATTTCCAGTTTTTC 3766 consensus_9524#1 GAAAAGGAAAATACCGCACCCATCTTGTGCGGTTTGTGTAGCCTTTATTTCCAGTTTTTC 1423 consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 AGAAGCTCTGCTAAATATTAATCCAGTGGGGATCGATTTTAGATCTCACCAGCTTCAGAT 3826 consensus_9524#1 AGAAGCTCTGCTAAATATTAATCCAGTGGGGATCGATTTTAGATCT-------------- 1469 consensus_9524#2 ------------------------------------------------------------ consensus_9524#0 ATTCAGTTGTGCTT 3840 consensus_9524#1 -------------- consensus_9524#2 -------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||