cluster # 9529

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Oryza sativa
cluster # 9529 cluster # 9529 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9529#0 length = 604 sequences # 4

consensus_9529#1 length = 523 sequences # 2

consensusID : consensus_9529#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 604
fasta sequence

                              [CACACACCCAAACACAAACAAGAGCATCATCTGAGCGTGCAGAGCTCACACAAACACACGTACAGATCGTTCGTACAAGTGCAACAAACACATGGCGAGCGGCGGAGGGAAGGCGAAGGCGTCGTCGTGGGCGGCGGCGATGAGCGTGGGCACGGTGGAGGCGCTCAAGGACCAGGCCGGACTGTGCCGCTGGAACTACGCGTTCCGGACGCTCCAGCAGCGCGGCAGGCAGCAGGCCGTGGCCGGGACGAGCGGCGCCAAGAGCGGCGGCGGCGCGCGTGCGCTGCAGCCTGCAGCGGCGGCGGCGGCGAGGAGGAAAGCCCAGCAGCAAGAGGAGGAGCTGAGGACGGTCATGTACCTCAGCAACTGGGGCCCAAACAACTAATTGTTACTGAGCTGATCAGTCAGATTAGGATCGTGTTAGGTGGTTAGATTGGTTTTGGTGCTTGCAAGATGGAACTGCTTGTATATGCAGACGAGTTTTGCACAAGATGTATATATACGATATATATGATATGGCAACTAATCAAGAGCTTTGGTNATG--NACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK062619             [CACACACCCAAACACAAACAAGAGCATCATCTGAGCGTGCAGAGCTCACACAAACACACGTACAGATCGTTCGTACAAGTGCAACAAACACATGGCGAGCGGCGGAGGGAAGGCGAAGGCGTCGTCGTGGGCGGCGGCGATGAGCGTGGGCACGGTGGAGGCGCTCAAGGACCAGGCCGGACTGTGCCGCTGGAACTACGCGTTCCGGACGCTCCAGCAGCGCGGCAGGCAGCAGGCCGTGGCCGGGACGAGCGGCGCCAAGAGCGGCGGCGGCGCGCGTGCGCTGCAGCCTGCAGCGGCGGCGGCGGCGAGGAGGAAAGCCCAGCAGCAAGAGGAGGAGCTGAGGACGGTCATGTACCTCAGCAACTGGGGCCCAAACAACTAATTGTTACTGAGCTGATCAGTCAGATTAGGATCGTGTTAGGTGGTTAGATTGGTTTTGGTGCTTGCAAGATGGAACTGCTTGTATATGCAGACGAGTTTTGCACAAGATGTATATATACGATATATATGATATGGCAACTAATCAAGAGCTTT                                                                     ]
[+] EMBL OS0979A              [               AAACAAGAGCATCATCTGAGCGTGCAGAGCTCACACAAACACACGTACAGATCGTTCGTACAAGTGCAACAAACACATGGCGAGCGGCGGAGGGAAGGCGAAGGCGTCGTCGTGGGCGGCGGCGATGAGCGTGGGCACGGTGGAGGCGCTCAAGGACCAGGCCGGACTGTGCCGCTGGAACTACGCGTTCCGGACGCTCCAGCAGCGCGNCAGGCAGCAGGCCGTGGCCGGGACGAGCGGCGCCAAGAGCGGCGGCGGCGCGCGTGCGTTGCAGCCTGCATCGGNGGCGGCGTTGAGGNGGANAGCNCAGannangag                                                                                                                                                                                                                                                                                 ]
[+] EMBL C98184               [                                                                                                                                                                                                                                                                                                    GCAGCGGCGGCGGCGGCGAGGAGGAAAGCCCAGCAGCAAGAGGAGGAGCTGAGGACGGTCATGTACCTCAGCAACTGGGGCCCAAACAACTAATTGTTACTGAGCTGATCAGTCAGATTAGGATCGTGTTAGGTGGTTAGATTGGTTTTGGTGCTTGCAAGATGGAACTGCTTGTATATGCAGACGAGTTTTGCACAAGATGTATATATACGATATATATGATATGGCAACTAATCAAGAGCTTTGGTNATG  NACAAAAAAAAAA                                               ]
[+] EMBL CF316882             [                                                                                                                                                                                                                                                                                                                                                                                                                                       GGTGGTTAGATTGGTTTTGGTGCTTGCAAGATGGAACTGCTTGTATATGCAGACGAGTTTTGCACAAGATGTATATATACGATATATATGATATGGCAACTAATCAAGAGCTTTGGTTATGCNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_9529#0
CACACACCCAAACACAAACAAGAGCATCATCTGAGCGTGCAGAGCTCACACAAACACACG
TACAGATCGTTCGTACAAGTGCAACAAACACATGGCGAGCGGCGGAGGGAAGGCGAAGGC
GTCGTCGTGGGCGGCGGCGATGAGCGTGGGCACGGTGGAGGCGCTCAAGGACCAGGCCGG
ACTGTGCCGCTGGAACTACGCGTTCCGGACGCTCCAGCAGCGCGGCAGGCAGCAGGCCGT
GGCCGGGACGAGCGGCGCCAAGAGCGGCGGCGGCGCGCGTGCGCTGCAGCCTGCAGCGGC
GGCGGCGGCGAGGAGGAAAGCCCAGCAGCAAGAGGAGGAGCTGAGGACGGTCATGTACCT
CAGCAACTGGGGCCCAAACAACTAATTGTTACTGAGCTGATCAGTCAGATTAGGATCGTG
TTAGGTGGTTAGATTGGTTTTGGTGCTTGCAAGATGGAACTGCTTGTATATGCAGACGAG
TTTTGCACAAGATGTATATATACGATATATATGATATGGCAACTAATCAAGAGCTTTGGT
NATGNACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA

consensusID : consensus_9529#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 523
fasta sequence

                              [ACAAACAAGAGCATCATCTGAGCGTGCAGAGCTCACACAAACACACGTACAGATCGTTCGTACAAGTGCAACAAACACATGGCGAGCGGCGGAGGGAAGGCGAAGGCGTCGTCGTGGGCGGCGGCGATGAGCGTGGGCACGGTGGAGGCGCTCAAGGACCAGGCCGGACTGTGCCGCTGGAACTACGCGTTCCGGACGCTCCAGCAGCGCGGCCAGGCAGCAGGCCGTGGCCGGGACGAGCGGCGCCAAGAGCGGCGGCGGCGCGCGTGCCTGCAGCCTGCAGGGCCGGCGGCGGCGAGGAGGAAAGCCCAGCAGCAACTGGGGCCCAAACAACTAATTGTTACTGAGCTGATCAGTCAGATTAGGATCGTGTTAGGTGGTTAGATTGGTTTTGGTGCTTTCAAGATGGAACTTCTTGTATATTCAGACGAGTTTTTCACAAGATGTATTATNTTACGGTATATATGATATGGCAACTAATCAAGAGCTTTGGTTATGCACAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL OSS15886A            [ACAAACAAGAGCATCATCTGAGCGTGCAGAGCTCACACAAACACACGTACAGATCGTTCGTACAAGTGCAACAAACACATGGCGAGCGGCGGAGGGAAGGCGAAGGCGTCGTCGTGGGCGGCGGCGATGAGCGTGGGCACGGTGGAGGCGCTCAAGGACCAGGCCGGACTGTGCCGCTGGAACTACGCGTTCCGGACGCTCCAGCAGCGCGGCCAGGCAGCAGGCCGTGGCCGGGACGAGCGGCGCCAAGAGCGGCGGCGGCGCGCGTGCCTGCAGCCTGCAGGGCCGGCGGCGGCGAGGAGGAAAGCCCAGCAGCAACTGGGGCCCAAACAACTAATTGTTACTGAGCTGATCAGTCAGATTAGGATCGTGTTAGGTGGTTAGATTGGTTTTGGTGCTTTCAAGATGGAACTTCTTGTATATTCAGACGAGTTTTTCACAAGATGTATTATNTTACGGTA                                                              ]
[+] EMBL AU089783             [                                                                                                                                                                                                                                                                                nCAGCCTGCAGCGGCGGCGGCGGCGAGGAGGAAAGCCCAGCAGCAACTGGGGCCCAAACAACTAATTGTTACTGAGCTGATCAGTCAGATTAGGATCGTGTTAGGTGGTTAGATTGGTTTTGGTGCTTGCAAGATGGAACTGCTTGTATATGCAGACGAGTTTTGCACAAGATGTA TAT ATACGATATATATGATATGGCAACTAATCAAGAGCTTTGGTTATGCACAAAAAAAAAAAAAAAAAAAAAA]




>consensus_9529#1
ACAAACAAGAGCATCATCTGAGCGTGCAGAGCTCACACAAACACACGTACAGATCGTTCG
TACAAGTGCAACAAACACATGGCGAGCGGCGGAGGGAAGGCGAAGGCGTCGTCGTGGGCG
GCGGCGATGAGCGTGGGCACGGTGGAGGCGCTCAAGGACCAGGCCGGACTGTGCCGCTGG
AACTACGCGTTCCGGACGCTCCAGCAGCGCGGCCAGGCAGCAGGCCGTGGCCGGGACGAG
CGGCGCCAAGAGCGGCGGCGGCGCGCGTGCCTGCAGCCTGCAGGGCCGGCGGCGGCGAGG
AGGAAAGCCCAGCAGCAACTGGGGCCCAAACAACTAATTGTTACTGAGCTGATCAGTCAG
ATTAGGATCGTGTTAGGTGGTTAGATTGGTTTTGGTGCTTTCAAGATGGAACTTCTTGTA
TATTCAGACGAGTTTTTCACAAGATGTATTATNTTACGGTATATATGATATGGCAACTAA
TCAAGAGCTTTGGTTATGCACAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9529#0      CACACACCCAAACACAAACAAGAGCATCATCTGAGCGTGCAGAGCTCACACAAACACACG 60
consensus_9529#1      -------------ACAAACAAGAGCATCATCTGAGCGTGCAGAGCTCACACAAACACACG 47
                                   ***********************************************

consensus_9529#0      TACAGATCGTTCGTACAAGTGCAACAAACACATGGCGAGCGGCGGAGGGAAGGCGAAGGC 120
consensus_9529#1      TACAGATCGTTCGTACAAGTGCAACAAACACATGGCGAGCGGCGGAGGGAAGGCGAAGGC 107
                      ************************************************************

consensus_9529#0      GTCGTCGTGGGCGGCGGCGATGAGCGTGGGCACGGTGGAGGCGCTCAAGGACCAGGCCGG 180
consensus_9529#1      GTCGTCGTGGGCGGCGGCGATGAGCGTGGGCACGGTGGAGGCGCTCAAGGACCAGGCCGG 167
                      ************************************************************

consensus_9529#0      ACTGTGCCGCTGGAACTACGCGTTCCGGACGCTCCAGCAGCGCGGC-AGGCAGCAGGCCG 239
consensus_9529#1      ACTGTGCCGCTGGAACTACGCGTTCCGGACGCTCCAGCAGCGCGGCCAGGCAGCAGGCCG 227
                      ********************************************** *************

consensus_9529#0      TGGCCGGGACGAGCGGCGCCAAGAGCGGCGGCGGCGCGCGTGCGCTGCAGCCTGCAGCGG 299
consensus_9529#1      TGGCCGGGACGAGCGGCGCCAAGAGCGGCGGCGGCGCGCGTGC-CTGCAGCCTGCAGGGC 286
                      ******************************************* ************* * 

consensus_9529#0      CGGCGGCGGCGAGGAGGAAAGCCCAGCAGCAAGAGGAGGAGCTGAGGACGGTCATGTACC 359
consensus_9529#1      CGGCGGCGGCGAGGAGGAAAGCCCAGCAGCAA---------------------------- 318
                      ********************************                            

consensus_9529#0      TCAGCAACTGGGGCCCAAACAACTAATTGTTACTGAGCTGATCAGTCAGATTAGGATCGT 419
consensus_9529#1      -------CTGGGGCCCAAACAACTAATTGTTACTGAGCTGATCAGTCAGATTAGGATCGT 371
                             *****************************************************

consensus_9529#0      GTTAGGTGGTTAGATTGGTTTTGGTGCTTGCAAGATGGAACTGCTTGTATATGCAGACGA 479
consensus_9529#1      GTTAGGTGGTTAGATTGGTTTTGGTGCTTTCAAGATGGAACTTCTTGTATATTCAGACGA 431
                      ***************************** ************ ********* *******

consensus_9529#0      GTTTTGCACAAGATGTAT-ATAT-ACGATATATATGATATGGCAACTAATCAAGAGCTTT 537
consensus_9529#1      GTTTTTCACAAGATGTATTATNTTACGGTATATATGATATGGCAACTAATCAAGAGCTTT 491
                      ***** ************ ** * *** ********************************

consensus_9529#0      GGTNATGNACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 597
consensus_9529#1      GGTTATGCACAAAAAAAAAAAAAAAAAAAAAA---------------------------- 523
                      *** *** ************************                            

consensus_9529#0      AAAAAAA 604
consensus_9529#1      -------