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Oryza sativa
cluster # 9538 cluster # 9538       Sequences # 6       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9538#0 length = 1356 sequences # 6  

consensusID : consensus_9538#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1356
fasta sequence
                              [CCATTAAGGTAATCAATCAACCATGGCGCCCTCCCGCCCGCTCATGCGCGGGATCCGCCCGCCGCGCGTCTTCCCCACCCGCGGCGGCCGCACCTCGCCCTTGGCCCTCGCCCTCGCCGCCCTCCTCCTCGCCTCCGCCTTGCTCCTCGCCCTCATCGCCTTCGGCGTCTTCTCCCTCCCGGTCTCCGCCCCCAACGCCGCCACCACCGACTCCGCCGCCGCCGGGGGAGACGCCGAGCCCGCCGATCCACGGCCCCCGCGCACCCGCGCCCGCCGCGACCTTAGCGAGGGCCTTGGGGAACGAGGAGCACAATGGACGGAAGTCATATCATGGGAGCCCAGGGCTTTCGTCTATCACAATTTCCTGTCCAAGGAAGAGTGTGATTACTTGATTGGATTGGCCAAGCCTCACATGGTCAAATCCACGGTTGTTGATAGCACTACTGGTAAAAGCAAGGACAGCAGGGTACGCACAAGTTC-AGGCATG-TTTCTCC-AAAGGGGACGAGACAAGGTTATTCGGGCCATTGAAAAGAGGATAGCAGACTACAC-TTTCATTCCTATGGAA-CATGGA-GAGGGACTCCAAGTTC-TGCACTATGAAGTCGGGCAGAAGTACGAGCCTCACTTTGACTATTTTCTTGATGAGTACAACACCAAGAATGGTGGTCAGAGAATGGCTACTCTTCTGATGTATCTATCTGATGTTGAAGAAGGGGGTGAGACTATTTTCCCTGATGCAAATGTGAACAGCAGTTCATTACCATGGTATAATGAACTTTCAGAGTGTGCCAGAAAGGGCCTTGCTGTCAAACCAAAGATGGGAGATGCGCTTCTTTTTTGGAGCATGAAACCAGATGCCACTCTAGACCCTTTAAGTTTGCATGGGGGTTGTCCTGTCATCAAAGGAAACAAATGGTCATCAACCAAGTGGATGCATGTCCGTGAGTACAAAGCTTGAGCTTTCTGAAGTCGTGATTACCAAAGATGGACCCTATATAAAGCATTGACTGGGGCACTTTCCAGGATGGCAGTTATGTAGGCTTTAGAGATCCACACCGGTGGTATTCTTTGCTCTCTGAGAATATATAGTAGAGGCACTAAGCAAGGGGGTTTACTTGTCCATACCGTGTTTTTGGAGATGGTCTTGTTGAACCTGGCGCCTTTTCTTCTTTATTTTTTCTGGCAGACTACAGAGGAATGAATGGTCCATTGTTGGGGACATAGGGTGTGGCGTTTGATTTAGTTTGTTTTGTGGTGTATTGCTATCTGCTAATGTTAGTAGCTTAATTATGTACACTGTTGAGCTAAGTTGTCATTACTATAGAGCTCTCTCCTATACATGAGGGGAGGTGACAAAAA]

[+] EMBL CA754786             [CCATTAAGGTAATCAATCAACCATGGCGCCCTCCCGCCCGCTCATGCGCGGGATCCGCCCGCCGCGCGTCTTCCCCACCCGCGGCGGCCGCACCTCGCCCTTGGCCCTCGCCCTCGCCGCCCTCCTCCTCGCCTCCGCCTTGCTCCTCGCCCTCATCGCCTTCGGCGTCTTCTCCCTCCCGGTCTCCGCCCCCAACGCCGCCACCACCGACTCCGCCGCCGCCGGGGGAGACGCCGAGCCCGCCGATCCACGGCCCCCGCGCACCCGCGCCCGCCGCGACCTTAGCGAGGGCCTTGGGGAACGAGGAGCACAATGGACGGAAGTCATATCATGGGAGCCCAGGGCTTTCGTCTATCACAATTTCCTGTCCAAGGAAGAGTGTGATTACTTGATTGGATTGGCCAAGCCTCACATGGTCAAATCCACGGTTGTTGATAGCACTACTGGTAAAAGCAAGGACAGCAGGGTACGCACAAGTTC AGGCATG TTTCTCC AAAGGGGACGAGACAAGGTTATTCGGGCCATTGAAAAGAGGATAGCAGACTACAC TGTCATTCCTATGGAA CATGGA AAGGGACTCCNAGTTC TGCACTATGAAATCGGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL OSC103751            [                                                                                                                                                                                                                                                                                                                         TGGACGGAAGTCATATCATGGGAGCCCAGGGCTTTCGTCTATCACAATTTCCTGTCCAAGGAAGAGTGTGATTACTTGATTGGATTGGCCAAGCCTCACATGGTCAAATCCACGGTTGTTGATAGCACTACTGGTAAAAGCAAGGACAGCAGGGTACGCACAAGTTCAAGGCATGTTTTCTCCAAAAGGGGACGAGACAAGGTTATTCGGGCCATTGAAAANAGGATAGCAGACTACACTTTTCATTCCTATGGAACCATGGAGGATGGACTCCAAGTTCTTGCACTATGAAGTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CB096348             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GCCATTGAAAAGAGGATAGCAGACTACAC TTTCATACCTATGGAA CATGGA GAGGGACTCCAAGTTC TGCACTATGAAGTCGGGCAGAAGTACGAGCCTCACTTTGACTATTTTCTTGATGAGTACAACACCAAGAATGGTGGTCAGAGAATGGCTACTCTTCTGATGTATCTATCTGATGTTGAAGAAGGGGGTGAGACTATTTTCCCTGATGCAAATGTGAACAGCAGTTCATTACCATGGTATAATGAACTTTCAGAGTGTGCCAGAAAGGGCCTTGCTGTCAAACCAAAGATGGGAGATGCGCTTCTTTTTTGGAGCATGAAACCAGATGCCACTCTAGACCCTTTAAGTTTGCATGGGGGTTGTCCTGTCATCAAAGGAAACAAATGGTCATCAACCAAGTGGATGCATGTCCGTGAGTACAAAGCTTGAGCTTTCTGAAGTCGTGATTGCCAAAGATGGACCCTATATAAAGCATTGACTGGGGCACTTTCCAGGATGGCAGTTATGTAGGCTTTAGAGATCCACACCGGTGGTATTCTTTGCTCTCTGAGAATATATAGTAGAGGCACTAAGCAAGGGGGTTTACTTGTCCATACCGTGTTTTTGGAGATGGTCTTGNTGAACCTGGCGCCTTTTCTTCTTTATTTTTTCTGGCAGACTACAGAGGAATGAATGGTCCATTGNTGGGGACATANGGTGGGGCGGTTGANTTAG TTGGTTTGGGGGGGATTGCTATCTGCTAAGGTagg                                                                                ]
[+] EMBL CA767111             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CCATTGAAAAGAGGATAGCAGACTACAC TTTCATTCCTATGGAA CATGGA GAGGGACTCCAAGTTC TGCACTATGAAGTCGGGCAGAAGTACGAGCCTCACTTTGACTATTTTCTTGATGAGTACAACACCAAGAATGGTGGTCAGAGAATGGCTACTCTTCTGATGTATCTATCTGATGTTGAAGAAGGGGGTGAGACTATTTTCCCTGATGCAAATGTGAACAGCAGTTCATTACCATGGTATAATGAACTTTCAGAGTGCGCCAGAAAGGGCCTTGCTGTCAAACCAAAGATGGGAGATGCGCTTCTTTTTTGGAGCATGAAACCAGATGCCACTCTAGACCCTTTAAGTTTGCATGGGGGTTGTCCTGTCATCAAAGGAAACAAATGGTCATCAACCAAG                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU092064             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         gnTGGTCAGAGAATGGCTACTCTTCTGATGTATCTATCTGATGTTGAAGAAGGGGGTGAGACTATTTTCCCTGATGCAAATGTGAACAGCAGTTCATTACCATGGTATAATGAACTTTCAGAGTGTGCCAGAAAGGGCCTTGCTGTCAAACCAAAGATGGGAGATGCGCTTCTTTTTTGGAGCATGAAACCAGATGCCACTCTAGACCCTTTAAGTTTGCATGGGGGTTGTCCTGTCATCAAAGGAAACAAATGGTCATCAACCAAGTGGATGCATGTCCGTGAGTACAAAGCTTGAGCTTTCTGAAGTCGTGATTACCAAAGATGGACCCTATATAAAGCATTGACTGGGGCACTTTCCAGGATGGCAGTTATGTAGGCTTTAGAGATCCACACCGGTGGTATTCTTTGCTCTCTGAGAATATATAGTAGAGGCACTAAGCAAGGGGGTTTACTTGTCCATACCGTGTTTTTGGAGATGGTCTTGTTGAACCTGGCGCCTTTTCTTCTTTATTTTTTCTGGCAGACTACAGAGGAATGAATGGTCCATTGTTGGGGACATAGGGTGTGGCGTTTGATTTAGTTTGTTTTGTGGTGTATTGCTATCTGCTAATGTTAGTAGCTTAATTATGTACACTGTTGAGCTAAGTTGTCATTACTATAGAGCTCTCTCCTATACATGAGGGGAGGTGACAAAAA]
[+] EMBL AK058935             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CATGAAACCAGATGCCACTCTAGACCCTTTAAGTTTGCATGGGGGTTGTCCTGTCATCAAAGGAAACAAATGGTCATCAACCAAGTGGATGCATGTCCGTGAGTACAAAGCTTGAGCTTTCTGAAGTCGTGATTACCAAAGATGGACCCTATATAAAGCATTGACTGGGGCACTTTCCAGGATGGCAGTTATGTAGGCTTTAGAGATCCACACCGGTGGTATTCTTTGCTCTCTGAGAATATATAGTAGAGGCACTAAGCAAGGGGGTTTACTTGTCCATACCGTGTTTTTGGAGATGGTCTTGTTGAACCTGGCGCCTTTTCTTCTTTATTTTTTCTGGCAGACTACAGAGGAATGAATGGTCCATTGTTGGGGACATAGGGTGTGGCGTTTGATTTAGTTTGTTTTGTGGTGTATTGCTATCTGCTAATGTTAGTAGCTTAATTATGTACACTGTTGAGCTAAGTTGTCATTACTATAGAGCTCTCTCCTATACATGAGGGG            ]


>consensus_9538#0 CCATTAAGGTAATCAATCAACCATGGCGCCCTCCCGCCCGCTCATGCGCGGGATCCGCCC GCCGCGCGTCTTCCCCACCCGCGGCGGCCGCACCTCGCCCTTGGCCCTCGCCCTCGCCGC CCTCCTCCTCGCCTCCGCCTTGCTCCTCGCCCTCATCGCCTTCGGCGTCTTCTCCCTCCC GGTCTCCGCCCCCAACGCCGCCACCACCGACTCCGCCGCCGCCGGGGGAGACGCCGAGCC CGCCGATCCACGGCCCCCGCGCACCCGCGCCCGCCGCGACCTTAGCGAGGGCCTTGGGGA ACGAGGAGCACAATGGACGGAAGTCATATCATGGGAGCCCAGGGCTTTCGTCTATCACAA TTTCCTGTCCAAGGAAGAGTGTGATTACTTGATTGGATTGGCCAAGCCTCACATGGTCAA ATCCACGGTTGTTGATAGCACTACTGGTAAAAGCAAGGACAGCAGGGTACGCACAAGTTC AGGCATGTTTCTCCAAAGGGGACGAGACAAGGTTATTCGGGCCATTGAAAAGAGGATAGC AGACTACACTTTCATTCCTATGGAACATGGAGAGGGACTCCAAGTTCTGCACTATGAAGT CGGGCAGAAGTACGAGCCTCACTTTGACTATTTTCTTGATGAGTACAACACCAAGAATGG TGGTCAGAGAATGGCTACTCTTCTGATGTATCTATCTGATGTTGAAGAAGGGGGTGAGAC TATTTTCCCTGATGCAAATGTGAACAGCAGTTCATTACCATGGTATAATGAACTTTCAGA GTGTGCCAGAAAGGGCCTTGCTGTCAAACCAAAGATGGGAGATGCGCTTCTTTTTTGGAG CATGAAACCAGATGCCACTCTAGACCCTTTAAGTTTGCATGGGGGTTGTCCTGTCATCAA AGGAAACAAATGGTCATCAACCAAGTGGATGCATGTCCGTGAGTACAAAGCTTGAGCTTT CTGAAGTCGTGATTACCAAAGATGGACCCTATATAAAGCATTGACTGGGGCACTTTCCAG GATGGCAGTTATGTAGGCTTTAGAGATCCACACCGGTGGTATTCTTTGCTCTCTGAGAAT ATATAGTAGAGGCACTAAGCAAGGGGGTTTACTTGTCCATACCGTGTTTTTGGAGATGGT CTTGTTGAACCTGGCGCCTTTTCTTCTTTATTTTTTCTGGCAGACTACAGAGGAATGAAT GGTCCATTGTTGGGGACATAGGGTGTGGCGTTTGATTTAGTTTGTTTTGTGGTGTATTGC TATCTGCTAATGTTAGTAGCTTAATTATGTACACTGTTGAGCTAAGTTGTCATTACTATA GAGCTCTCTCCTATACATGAGGGGAGGTGACAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)