cluster # 9542

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 9542 cluster # 9542 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9542#0 length = 602 sequences # 4

consensus_9542#1 length = 380 sequences # 1
consensus_9542#2 length = 278 sequences # 1

consensusID : consensus_9542#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 602
fasta sequence

                              [GGTGAGAATATCTCCAGAGTTGGTTGATCGGAGCAAGAGCGAGCTAACCGGCGACCGGAGGTAGGGATGGCGATCAGGAGCATGACGGTGGCGACGACGACGCGGTCTCTGGACGGCGACATGACGGTGGACGAGTTCAAGGAGTGGCTGAGGCGGTTCGATGTCGACCGCGACGGGCGCATCAGCCGCGACGAGCTGCGGCGCGCGATGCGCGCCATCCGGGCGCGG-TTCACGGGGTGGAGGAGCAGGCAGGGCATCAGCTACGCCGACGCGGACGGCGACGGCTACATCGACGACGGCGAGGTGGACGGCCTCATCGAGTACGCGCAG-AAGAGCCTCGGCCTCAGGATCGTCGCCTACTAGCTAGCTAATCCAAGCCATGGCTGCTAGCTCCTTTGCAGC-TCGATCGGCTGGCCGTTTGCG-ACCTAAATAATCTCCATCTTGATCGCTTGTCACTTCGTCTTGCTTTCTTGTACTTAAATTAATCAACTCATGTACTGTGTGTGCTTGTGATCTGCGCTGTATTATTAATTGATGTATCACTGATTGCTCTTTGAGAAATCAATTGACCCATGTATGTTCTTGATCGACGAAAAAAAAAA]

[+] EMBL C26905               [GGTGAGAATATCTCCAGAGTTGGTTGATCGGAGCAAGAGCGAGCTAACCGGCGACCGGA GTAGGGATGGCGATCAGGAGCATGACGGTGGCGACGACGACGCGGTCTCTGGACGGCGACATGACGGTGGACGAGTTCAAGGAGTGGCTGAGGCGGTTCGATGTCGACCGCNACGGGCGCATCANCCGCGACGAGCTGCGGCGCGCNATGC NANTNCCCGGGCGGGGTTTCACGGGGTGGAGGAGCAGGCAGGGCATCAGCTACGCCGACGCGGACGGCGACGGCTACATCGACGACGGCGAGGTTGACGGCCTCATCGAGTACGCGCAGAAAGAACCTCGGCCTCAAGATCGTngg                                                                                                                                                                                                                                                        ]
[-] EMBL BU672925             [               AGAGTTGGTTGATCGGAGCAAGAGCGAGCTTACCGGCGACCGGAGGTAGGGATGGCGATCAGGAGCATGACGGTGGCGACGACGACGCGGTCGCTGGACGGCGACATGACGGTGGACGAGTTCAAGGAGTGGCTGAGGCGGTTCGATGTCGACCGCGACGGGCGCATCAGCCGCGACGAGCTGCGGCGCGCGATGCGCGCCATCCGGGCGCGG TTCACGGGGTGGAGGAGCAGGCAGGGCATCAGCTACGCCGACGCGGACGGCGACGGCTACATCGACGACGGCGAGGTGGACGGCCTCATCGAGTACGCGCAG AAGAGCCTCGGTCTCAGGATCGTCGCCTACTAGCTAGCTAATCCAAGCCATGGCTGCTAGCTCCTTTGCAGC TCGATCGGCTGGCCGTTTGCG ACCTAAATAATCTCCATCTTGATCGCTTGTCACTTCGTCTTGCTTTCTTGTACTTAAATTAATCAACTCATGTACTGTGTGTGCTTGTGATCTGCGCTGTATTATTAATTGATGTATCACTGATTGCTCTT                                                ]
[+] EMBL AU092671             [                     GGTTGATCGGAGCAAGAGCGAGCTAACCGGCGACCGAAGGTAGGGATGGCGATCAGGAGCATGACGGTGGCGACGACGACGCGGTCTCTGGACGGCGACATGACGGTGGACGAGTTCAAGGAGTGGCTNAGGCGGTTCGATGTCGACCGCGACGGGCGCATCAGCCGCGACGAGCTGCGGCGCGCGATGCGCGCCATCCGGGCGCGG TTCACGGGGTGGAGGAGCAGGCAGGGCATCAGCTACGCCGACGCGGACGGCGACGGCTACATCGACGACGGCGAGGTGGACGGCCTCATCGAGTACGCGCAG AAGAGCCTCGGCCTCAGGATCGTCGCCTACTAGCTAGCTAATCCAAGCCATGGCTGCTAGCTCCTTTGCAGC TCGATCGGCTGGCCGTTTGCG ACCTAAATAATCTCCATCTTGATCGCTTGTCACTTCGTCTTGCTTTCTTGTACTTAAATTAATCAACTCATGTACTGTGTGTGCTTGTGATCTGCGCTGTATTATTAATTGATGTATCACTGATTGCTCTTTGAGAAATCAATTGACCCATGTATGTTCTTGATCGACGAAAAAAAAAA]
[-] EMBL CB966257             [                                                                                                                                                                                                                                                                                                                                                                                                     TAGCTCCTTTGCAGCNTCGATCGGCTGGCCGTTTGCGNACCTAAATAATCTCCATCTTGATCGCTTGTCACTTCGTCTTGCTTTCTTGTACTTAAATTAATCAACTCATGTACTGTGTGTGCTTGTGATCTGCGCTGTATTATTAATTGATGTATCACTGATTGCTCTT                                                ]




>consensus_9542#0
GGTGAGAATATCTCCAGAGTTGGTTGATCGGAGCAAGAGCGAGCTAACCGGCGACCGGAG
GTAGGGATGGCGATCAGGAGCATGACGGTGGCGACGACGACGCGGTCTCTGGACGGCGAC
ATGACGGTGGACGAGTTCAAGGAGTGGCTGAGGCGGTTCGATGTCGACCGCGACGGGCGC
ATCAGCCGCGACGAGCTGCGGCGCGCGATGCGCGCCATCCGGGCGCGGTTCACGGGGTGG
AGGAGCAGGCAGGGCATCAGCTACGCCGACGCGGACGGCGACGGCTACATCGACGACGGC
GAGGTGGACGGCCTCATCGAGTACGCGCAGAAGAGCCTCGGCCTCAGGATCGTCGCCTAC
TAGCTAGCTAATCCAAGCCATGGCTGCTAGCTCCTTTGCAGCTCGATCGGCTGGCCGTTT
GCGACCTAAATAATCTCCATCTTGATCGCTTGTCACTTCGTCTTGCTTTCTTGTACTTAA
ATTAATCAACTCATGTACTGTGTGTGCTTGTGATCTGCGCTGTATTATTAATTGATGTAT
CACTGATTGCTCTTTGAGAAATCAATTGACCCATGTATGTTCTTGATCGACGAAAAAAAA
AA

consensusID : consensus_9542#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 380
fasta sequence

                              [TGGTTGATCGGAGCAAGAGCGAGCTAACCGGCGACCGGAGTAGGNGATGGCGATCAGGAGCATGACGGTGGCGACGACGACGCGGTCTCTGGACGGCGACATGACGGTGGACGAGTTCAAGGAGTGGCTGAGGCGGTTCGATGTCGACCGCAACGGGCGCATCACCCGCNACGAGCTGCGGCGCGCAATGCCAATNCCNGGGCNGGTTTNACGGGGTGGAGGAGCAGGCAGGGCATCAGCTACGCCGACGCGGACGCGACGGCTACATCGACGACGGCGAGGTNGACGGCCTCATCGAGTACGCGCAGAAGAAGCCTCGGCCTCAGGNTCGTCGCCTACTTAGTTAGTAATCCAAGCCATNGCTTCTAGTTCCTTTTCAA]

[+] EMBL C27770               [TGGTTGATCGGAGCAAGAGCGAGCTAACCGGCGACCGGAGTAGGNGATGGCGATCAGGAGCATGACGGTGGCGACGACGACGCGGTCTCTGGACGGCGACATGACGGTGGACGAGTTCAAGGAGTGGCTGAGGCGGTTCGATGTCGACCGCAACGGGCGCATCACCCGCNACGAGCTGCGGCGCGCAATGCCAATNCCNGGGCNGGTTTNACGGGGTGGAGGAGCAGGCAGGGCATCAGCTACGCCGACGCGGACGCGACGGCTACATCGACGACGGCGAGGTNGACGGCCTCATCGAGTACGCGCAGAAGAAGCCTCGGCCTCAGGNTCGTCGCCTACTTAGTTAGTAATCCAAGCCATNGCTTCTAGTTCCTTTTCAA]




>consensus_9542#1
TGGTTGATCGGAGCAAGAGCGAGCTAACCGGCGACCGGAGTAGGNGATGGCGATCAGGAG
CATGACGGTGGCGACGACGACGCGGTCTCTGGACGGCGACATGACGGTGGACGAGTTCAA
GGAGTGGCTGAGGCGGTTCGATGTCGACCGCAACGGGCGCATCACCCGCNACGAGCTGCG
GCGCGCAATGCCAATNCCNGGGCNGGTTTNACGGGGTGGAGGAGCAGGCAGGGCATCAGC
TACGCCGACGCGGACGCGACGGCTACATCGACGACGGCGAGGTNGACGGCCTCATCGAGT
ACGCGCAGAAGAAGCCTCGGCCTCAGGNTCGTCGCCTACTTAGTTAGTAATCCAAGCCAT
NGCTTCTAGTTCCTTTTCAA

consensusID : consensus_9542#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 278
fasta sequence

                              [TCGGCGAGGTGGTCGGCCTCATCGAGTACGCGCAGAAGAGCCTCGGTCTCAGGATCGTCGCCTACTAGCTAGCTGAATCCAAGCCATGGCTGCTGAGCTGCCTTTGCAGCTGCGATGCGGCTGGCCGTTTGCGACCTGAAATGAATGCTGCCATGCTTGGATGCGCTTGTGCACTGTCGTGCTTGCTTTGCTTGTGACTTGAAATTAATCAACTCATGTACTGTGTGTGCTTGTGATCTGCGCTGTATTATTAATTGATGTATCACTGATTGCTCTTT]

[-] EMBL CB965397             [TCGGCGAGGTGGTCGGCCTCATCGAGTACGCGCAGAAGAGCCTCGGTCTCAGGATCGTCGCCTACTAGCTAGCTGAATCCAAGCCATGGCTGCTGAGCTGCCTTTGCAGCTGCGATGCGGCTGGCCGTTTGCGACCTGAAATGAATGCTGCCATGCTTGGATGCGCTTGTGCACTGTCGTGCTTGCTTTGCTTGTGACTTGAAATTAATCAACTCATGTACTGTGTGTGCTTGTGATCTGCGCTGTATTATTAATTGATGTATCACTGATTGCTCTTT]




>consensus_9542#2
TCGGCGAGGTGGTCGGCCTCATCGAGTACGCGCAGAAGAGCCTCGGTCTCAGGATCGTCG
CCTACTAGCTAGCTGAATCCAAGCCATGGCTGCTGAGCTGCCTTTGCAGCTGCGATGCGG
CTGGCCGTTTGCGACCTGAAATGAATGCTGCCATGCTTGGATGCGCTTGTGCACTGTCGT
GCTTGCTTTGCTTGTGACTTGAAATTAATCAACTCATGTACTGTGTGTGCTTGTGATCTG
CGCTGTATTATTAATTGATGTATCACTGATTGCTCTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9542#0      GGTGAGAATATCTCCAGAGTTGGTTGATCGGAGCAAGAGCGAGCTAACCGGCGACCGGAG 60
consensus_9542#1      --------------------TGGTTGATCGGAGCAAGAGCGAGCTAACCGGCGACCGGAG 40
consensus_9542#2      ------------------------------------------------------------
                                                                                  

consensus_9542#0      GTAGGGATGGCGATCAGGAGCATGACGGTGGCGACGACGA--CGCGGTCTCTGGACGGCG 118
consensus_9542#1      TAGGNGATGGCGATCAGGAGCATGACGGTGGCGACGACGA--CGCGGTCTCTGGACGGCG 98
consensus_9542#2      TCGGCGA-GGTGGTCGGCCTCATCGAGTACGCGCAGAAGAGCCTCGGTCTCAGGATCGTC 59
                         * ** ** * ** *   ***   *   ***  ** **  * ******* ***  *  

consensus_9542#0      ACATGACGG-TGGACGAGTTCAAGGAGTGGCTGAGGCGGTTCGATGTCGACCGCGACGGG 177
consensus_9542#1      ACATGACGG-TGGACGAGTTCAAGGAGTGGCTGAGGCGGTTCGATGTCGACCGCAACGGG 157
consensus_9542#2      GCCTACTAGCTAGCTGAATCCAAGCCATGGCTGCTGAGCTGCCTTTGCAGCTGCGATG-- 117
                       * *    * * *  ** * ****   ******  * * * *  *  *  * ** * *  

consensus_9542#0      CGCATCAGCCGCGACGAGCTGCGGCGCGCGATGCGCGCCATCCGGGCGCGGTTCACGGGG 237
consensus_9542#1      CGCATCACCCGCNACGAGCTGCGGCGCGCAATGC-CAATNCCNGGGCNGGTTTNACGGGG 216
consensus_9542#2      CGGCTGGCCGTTTGCGACCTGAAATGAATGCTGC--CATGCTTGGATGCGCTTGT--GCA 173
                      **  *   *     *** ***    *     ***         **    * **    *  

consensus_9542#0      TGGAGGAGCAGGCAGGGCATCAGCTACGCCGACGCGGACGGCGACGGCTACATCGACGAC 297
consensus_9542#1      TGGAGGAGCAGGCAGGGCATCAGCTACGCCGACGCGGACG-CGACGGCTACATCGACGAC 275
consensus_9542#2      CTGTCGTGCTTGCTTTGCTT--GTGACTTGAAATTAATCAACTCATGTACTGTGTGTGCT 231
                        *  * **  **   ** *  *  **    *      *  *    *     *    *  

consensus_9542#0      GGCGAGGTGGACGGCCTCATCGAGT-ACGCGCAGAAGA-GCCTCGGCCTCAGGATCGTCG 355
consensus_9542#1      GGCGAGGTNGACGGCCTCATCGAGT-ACGCGCAGAAGAAGCCTCGGCCTCAGGNTCGTCG 334
consensus_9542#2      TGTGATCTGCGCTGTATTATTAATTGATGTATCACTGATTGCTCTTT------------- 278
                       * **  *   * *  * **  * * * *       **   ***                

consensus_9542#0      CCTACTAGCTAGCTAATCCAAGCCATGGCTGCTAGCTCCTTTGCAGCTCGATCGGCTGGC 415
consensus_9542#1      CCTACTTAGTTAGTAATCCAAGCCATNGCTTCTAGTTCCTTTTCAA-------------- 380
consensus_9542#2      ------------------------------------------------------------
                                                                                  

consensus_9542#0      CGTTTGCGACCTAAATAATCTCCATCTTGATCGCTTGTCACTTCGTCTTGCTTTCTTGTA 475
consensus_9542#1      ------------------------------------------------------------
consensus_9542#2      ------------------------------------------------------------
                                                                                  

consensus_9542#0      CTTAAATTAATCAACTCATGTACTGTGTGTGCTTGTGATCTGCGCTGTATTATTAATTGA 535
consensus_9542#1      ------------------------------------------------------------
consensus_9542#2      ------------------------------------------------------------
                                                                                  

consensus_9542#0      TGTATCACTGATTGCTCTTTGAGAAATCAATTGACCCATGTATGTTCTTGATCGACGAAA 595
consensus_9542#1      ------------------------------------------------------------
consensus_9542#2      ------------------------------------------------------------
                                                                                  

consensus_9542#0      AAAAAAA 602
consensus_9542#1      -------
consensus_9542#2      -------