These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9543#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 808 fasta sequence [AAGGGGGGTAGCCTTTGATGTGAAGAAACAACCAACAAACACAAGAGAGGGAGAGGAGAGTGGAGAAGAAGAAGTGCAACNTTGTTCAGCTCGAGGCTCTTACCCGATCTTCATCAAGTCAGCGATTAGAGGCTCAAACGTGGTTGGATTGGCACCAAACTTGGTGAGTTTGTTCCTCACTTTGAGCACTTTAATCTGGCCAGTTTGGATGAGAATTGTTTGAGTAGAGCACCGGATTTGAGTAGTGGTTTATCAACTCGAGTTACTGAAATTACAGATTGTGCAACAATTAGTAAAGTGTCAGTTTGAGGGGTCAAACGGTGTCCGATTAAGCTGTTTTTTGGATAGCTTGGAAGGGACTCATAGACCATCATTTCTGCCATGTTTCATCAATTTGCATATGTGGTTTGAGAGATCTCAGCTGAGAACCGAAGAGGACAAAATCTGCCATTNCTCTGCTTGTTTGATGATATACCTCTTGTTAGCTTTGATGGTTGATGTTGATGATGCCAAGTGTGTAACTTGATGCTGTAGNTGCTATTGAGATGTGCCTCTANATGTTCTAGAGAAGACTCCAATTGTACCCATTGTTGATTATAGNGGAAGCTTGGAGTGGACCGTTGGTCCCGNAGTTTTTTACTCACATCGAGGAGGTTTNTTCCACGTNAATCACCATATTCTTGNGTGTATGNGTTTTATTGNCTATTTGCATTGTTTGATTTGGCTAGNTNGAAAACTATCCTCNAAAGTTCANGGCAAGATGATGGGNNTGATTCGNGCCGAAANACGTTTTGNCCGGCTTAGGNGA] [+] EMBL CA765031 [AAGGGGGGTAGCCTTTGATGTGAAGAAACAACCAACAAACACAAGAGAGGGAGAGGAGAGTGGAGAAGAAGAAGTGCAACNTTGTTCAGCTCGAGGCTCTTACCCGATCTTCATCAAGTCAGCGATTAGAGGCTCAAACGTGGTTGGATTGGCACCAAACTTGGTGAGTTTGTTCCTCACTTTGAGCACTTTAATCTGGCCAGTTTGGATGAGAATTGTTTGAGTAGAGCACCGGATTTGAGTAGTGGTTTATCAACTCGAGTTACTGAAATTACAGATTGTGCAACAATTAGTAAAGTGTCAGTTTGAGGGGTCAAACGGTGTCCGATTAAGCTGTTTTTTGGATAGCTTGGAAGGGACTCATAGACCATCATTTCTGCCATGTTTCATCAATTTGCATATGTGGTTTGAGAGATCTCAGCTGAGAACCGAAGAGGACAAAATCTGCCATTNCTCTGCTTGTTTGATGATATACCTCTTGTTAGCTTTGATGGTTGATGTTGATGATGCCAAGTGTGTAACTTGATGCTGTAGNTGCTATTGAGATGTGCCTCTANATGTTCTAGAGAAGACTCCAATTGTACCCATTGTTGATTATAGNGGAAGCTTGGAGTGGACCGTTGGTCCCGNAGTTTTTTACTCACATCGAGGAGGTTTNTTCCACGTNAATCACCATATTCTTGNGTGTATGNGTTTTATTGNCTATTTGCATTGTTTGATTTGGCTAGNTNGAAAACTATCCTCNAAAGTTCANGGCAAGATGATGGGNNTGATTCGNGCCGAAANACGTTTTGNCCGGCTTAGGNGA] consensusID : consensus_9543#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence [TTTTTTTTTTTTTTTAATTAAGATGGACTTCATCAGCTAATTAAAAGAAATATAATAAAGTATACGGCACCTTTGTCTAATCCTGATCTTAAGTGTTACTTATCAATTTAATTAGTAGACCTGCTTCCTCATAACATAAACAAGATACAGATCATTCAAGTCGGCAGCTCCACGTGCATAGAGCCAACCTGAATTAATTAACTTATTCTTCTTCTTGACCACAATATCAGCAGCATCACAGTATGTTTGCTGACACCATGGAAAAACACCAGCAGCTAGCCCTTTTGATCCCTCGCTCTTGCCATTTTTCATGACTGAAGTACAGGAACCAACCTAATATTTATTAAACTGTCGGTTGTAATATTTGTGTCCCTGCATGCGAATCAGCGCGCAGTGGTGGATGGCATCTGGGTCACCACCGGAGTCGACAGCGATGCGTTCCAGCTCCAGGACTGGCGCCAGTGTCCACATCATTATCCCGTCCACCTTAGCCTCCCGCGCTGTAGCCTTCCACAAGAACCTTTGGTTGCGGCGGCCATTGGGAGTGGGAGGACCGTGTGTTNGGACTGAACCAAAACACCAAGTTTGGTGCCAATCCAACCACGTTTGAGCCTCTAATCGCTGACTTGATGAAGATCGGGTAAGAGCCTCGAGCCTGACAAGCTGCACTTCTTCTTCT] [+] EMBL CA761895 [TTTTTTTTTTTTTTTAATTAAGATGGACTTCATCAGCTAATTAAAAGAAATATAATAAAGTATACGGCACCTTTGTCTAATCCTGATCTTAAGTGTTACTTATCAATTTAATTAGTAGACCTGCTTCCTCATAACATAAACAAGATACAGATCATTCAAGTCGGCAGCTCCACGTGCATAGAGCCAACCTGAATTAATTAACTTATTCTTCTTCTTGACCACAATATCAGCAGCATCACAGTATGTTTGCTGACACCATGGAAAAACACCAGCAGCTAGCCCTTTTGATCCCTCGCTCTTGCCATTTTTCATGACTGAAGTACAGGAACCAACCTAATATTTATTAAACTGTCGGTTGTAATATTTGTGTCCCTGCATGCGAATCAGCGCGCAGTGGTGGATGGCATCTGGGTCACCACCGGAGTCGACAGCGATGCGTTCCAGCTCCAGGACTGGCGCCAGTGTCCACATCATTATCCCGTCCACCTTAGCCTCCCGCGCTGTAGCCTTCCACAAGAACCTTTGGTTGCGGCGGCCATTGGGAGTGGGAGGACCGTGTGTTNGGACTGAACCAAAACACCAAGTTTGGTGCCAATCCAACCACGTTTGAGCCTCTAATCGCTGACTTGATGAAGATCGGGTAAGAGCCTCGAGCCTGACAAGCTGCACTTCTTCTTCT] consensusID : consensus_9543#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 571 fasta sequence [AGATTTTNAGTTTGGTGACTCTAACCCGGTCTTCATCAAGTCAGCGATTGGAAGGTCAAACGTGCTTGGTTCAATACCAAACTTGGTGAGTTTATTTCTCACTTGGTGAACTTCAATCTGGCCAGTTTTGGTGGGAATTGGTTGAGTAGAGCATCAGATTTGGGTATGGTTTCTTCAGCTCGAGTAACCGCAGTTTCAGCGTGTACAGTCTGTGGTAGAATGTCAGTTTGAGGGGTCAAACGGTGTCTGATTGGGCTGGTTTTTGGATAGCTTGGAAGGGACTTATAGACCATCATTTCTGCCAAGTTTCGTGCAATTTGTAATGATTTTGGGAGATCTCAAGTTANAACCGAAGTGGACAGAATCTGTCATTTCTCTGCTTGTTGTTGTTATACCTCTTGTTAGTTGCTATGGTTGTTGTTGTGATGTGCCTCTAGATGTTCTAGAGAAGACTCCATTTGTACCCATTGTTGATTATAGTGGAAGTTTGGAGTGGACCGTTGGTCCCGTGGTTTTTTACTCCTCACACCGAGGAGGTTTTTCTACATAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C27908 [AGATTTTNAGTTTGGTGACTCTAACCCGGTCTTCATCAAGTCAGCGATTGGAAGGTCAAACGTGCTTGGTTCAATACCAAACTTGGTGAGTTTATTTCTCACTTGGTGAACTTCAATCTGGCCAGTTTTGGTGGGAATTGGTTGAGTAGAGCATCAGATTTGGGTATGGTTTCTTCAGCTCGAGTAACCGCAGTTTCAGCGTGTACAGTCTGTGGTAGAATGTCAGTTTGAGGGGTCAAACGGTGTCTGATTGGGCTGGTTTTTGGATAGCTTGGAAGGGACTTATAGACCATCATTTCTGCCAAGTTTCGTGCAATTTGTAATGATTTTGGGAGATCTCAAGTTAN ] [+] EMBL AU092757 [ GATTTTCAGTTTGGTGACTCTAACCCGGTCTTCATCAAGTCAGCGATTGGAAGGTCAAACGTGCTTGGATCAATACCAAACTTGGTGAGTTTATTTCTCACTTGGTGAACTTCAATCTGGCCAGTTTTGGTGGGAATTGGTTGAGTAGAGCATCAGATTTGGGTATGGTTTCTTCAGCTCGAGTAACCGCAGTTTCAGCGTGTACAGTCTGTGGTAGAATGTCAGTTTGAGGGGTCAAACGGTGTCTGATTGGGCTGGTTTTTGGATAGCTTGGAAGGGACTTATAGACCATCATTTCTGCCAAGTTTCGTGCAATTTGT ATGA TTTGGGAGATCTCAGCTAAGAACCGAAGTGGACAGAATCTGTCATTTCTCTGCTTGTTGTTGTTATACCTCTTGTTAGTTGCTATGGTTGTTGTTGTGATGTGCCTCTAGATGTTCTAGAGAAGACTCCATTTGTACCCATTGTTGATTATAGTGGAAGTTTGGAGTGGACCGTTGGTCCCGTGGTTTTTTACTCCTCACACCGAGGAGGTTTTTCTACATAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_9543#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 525 fasta sequence [ATTATTGGATTAGACCTTCGAATTTGATTGTGTTTTTCAGCTCGATCACTAAAATCCAGATTGCCAAATAGTTAATAAAGTGTCGGCTTTAAAGGTCAAACCGGTGTCCGATTAGCCTGTTTTTTGACAGCTTGGAAGGGAATCATAGACCATCATTTCTCCAAGTTTCGTGCAACTGTGGTTTGGAGATCTCAGCTGAGAACCGAAAAGGACAGAATCTGCTATTTCTCTACTTGTTAGTTGATATACCTCTTGTTAGCTTTGATGGTTGAGATGTTGATAATCCCATGTAACTTGATGTTGTACCTGTTGTGATGTGTCTTTAGATATTATAGAGAAGACTACATTTGTACCCATTGTTGATTATAGTGGAAGCTTGGAGTGGACCGTTGGTCCCGTGTTTTTTACTCCTCACACCGAGGAGGTTTTTCCACGTAAATCACTGGTGTCTTGTGTCCATGTTTTATTGTTATTCCGCTACTGATTTGTTAAGTTGAAACTATCCTCAAAGTTCATCCCAAAAAA] [+] EMBL BI799604 [ATTATTGGATTAGACCTTCGAATTTGATTGTGTTTTTCAGCTCGATCACTAAAATCCAGATTGCCAAATAGTTAATAAAGTGTCGGCTTTAAAGGTCAAACCGGTGTCCGATTAGCCTGTTTTTTGACAGCTTGGAAGGGAATCATAGACCATCATTTCTCCAAGTTTCGTGCAACTGTGGTTTGGAGATCTCAGCTGAGAACCGAAAAGGACAGAATCTGCTATTTCTCTACTTGTTAGTTGATATACCTCTTGTTAGCTTTGATGGTTGAGATGTTGATAATCCCATGTAACTTGATGTTGTACCTGTTGTGATGTGTCTTTAGATATTATAGAGAAGACTACATTTGTACCCATTGTTGATTATAGTGGAAGCTTGGAGTGGACCGTTGGTCCCGTGTTTTTTACTCCTCACACCGAGGAGGTTTTTCCACGTAAATCACTGGTGTCTTGTGTCCATGTTTTATTGTTATTCCGCTACTGATTTGTTAAGTTGAAACTATCCTCAAAGTTCATCCCAAAAAA] consensusID : consensus_9543#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 264 fasta sequence [TTTTTGGATATCTTGGAAGGGACTCATAGACCATCATTTTTGCCAAGTTTAGTGCAATTTGCATCTGTGGTTTGGGAGATCTCATCTGAGAACCGAAAAGGACATAATCCGCTATTTCTTTGCTTATTTGTTGATATATTTCTTGTTAGCTTTGATGGTTGATGTTGATGATGCCAAATGTGTAACTTGATGTTATAGCTGCTGTTGTGATGTGCCTCTAGATGTTCTAGAGAAGACTCCATATGTACCCATTGTTGATTATGG] [-] EMBL AU165164 [TTTTTGGATATCTTGGAAGGGACTCATAGACCATCATTTTTGCCAAGTTTAGTGCAATTTGCATCTGTGGTTTGGGAGATCTCATCTGAGAACCGAAAAGGACATAATCCGCTATTTCTTTGCTTATTTGTTGATATATTTCTTGTTAGCTTTGATGGTTGATGTTGATGATGCCAAATGTGTAACTTGATGTTATAGCTGCTGTTGTGATGTGCCTCTAGATGTTCTAGAGAAGACTCCATATGTACCCATTGTTGATTATGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9543#3 ------------------------------------------------------------ consensus_9543#4 ------------------------------------------------------------ consensus_9543#0 AAGGGGGGTAGCCTTTGATGTGAAGAAACAACCAACAAACACAAGAGAGGGAGAGGAGAG 60 consensus_9543#2 ------------------------------------------------------------ consensus_9543#1 ------------------------------------------------------------ consensus_9543#3 ------------------------------------------------------------ consensus_9543#4 ------------------------------------------------------------ consensus_9543#0 TGGAGAAGAAGAAGTGCAACNTTGTTCAGCTCGAGGCTCTTACCCGATCTTCATCAAGTC 120 consensus_9543#2 ------------------AGATTTTNAGTTTGGTGACTCTAACCCGGTCTTCATCAAGTC 42 consensus_9543#1 ---------------------TTTTTTTTTTTTTTTAATTAAGATGGACTTCATCAGCT- 38 consensus_9543#3 ------------------------------------------------------------ consensus_9543#4 ------------------------------------------------------------ consensus_9543#0 AGCGATTAGAGGCTCAAACGTGGTTGGATTGGCACCAAACTTGGTGAGTTTGTTCCTCAC 180 consensus_9543#2 AGCGATTGGAAGGTCAAACGTGCTTGGTTCAATACCAAACTTGGTGAGTTTATTTCTCAC 102 consensus_9543#1 ---AATTAAAAG---AAATATAATAAAGTATACGGCACCTTTGTCTAATCCTGATCTTAA 92 consensus_9543#3 ----------------------------------ATTATTGGATTAGACCTTCGAATTTG 26 consensus_9543#4 ------------------------------------------------------------ consensus_9543#0 TTTGAGCACTTTAATCTGGCCAGTTTGGATGAGAATTGTTTGAGTAGAGCACCGGATTTG 240 consensus_9543#2 TTGGTGAACTTCAATCTGGCCAGTTTTGGTGGGAATTGGTTGAGTAGAGCATCAGATTTG 162 consensus_9543#1 GTGTTACTTATCAATTTAATTAGTAGACCTGCTTCCTCATAACATAAA-CAAGATACAGA 151 consensus_9543#3 ATTGT--GTTTTTCAGCTCGA-TCACTAAAATC-CAGATTGCCAAATAGTTAATAAAGTG 82 consensus_9543#4 ------------------------------------------------------------ consensus_9543#0 AGTAGTGGTTTATCAACTCGAGTTACTGAAATTACAGATTGTGCAACAATTAGTAAAGTG 300 consensus_9543#2 GGTATGGTTTCTTCAGCTCGAGTAACCGCAGTTTCAGCGTGTACAGTCTGTGGTAGAATG 222 consensus_9543#1 TCATTCAAGTCGGCAGCTCCACGTGCATAGAGC---CAACCTGAATTAATTAACTTATTC 208 consensus_9543#3 TCGGCTTTAAAGGTCAAACCGGTGTCCGATTAGCCTGTTTTTTG-ACAGCTTGGAAGGGA 141 consensus_9543#4 -------------------------------------TTTTTGG-ATATCTTGGAAGGGA 22 consensus_9543#0 TCAGTTTGAGGGGTCAAAC-GGTGTCCGATTAAGCTGTTTTTTGGATAGCTTGGAAGGGA 359 consensus_9543#2 TCAGTTTGAGGGGTCAAAC-GGTGTCTGATTGGGCTGGTTTTTGGATAGCTTGGAAGGGA 281 consensus_9543#1 TTCTTCTTGACCACAATATCAGCAGCATCACAGTATGTTTGCTG-ACACCATGGAAAAAC 267 ** * * * * ***** consensus_9543#3 ATCATAGACCATCATTTCT----CCAAGTTTCGTGCAA-------CTGTGGTTTGG-AGA 189 consensus_9543#4 CTCATAGACCATCATTTTTG---CCAAGTTTAGTGCAATTTGCATCTGTGGTTTGGGAGA 79 consensus_9543#0 CTCATAGACCATCATTTCTG---CCATGTTTCAT-CAATTTGCATATGTGGTTTGAGAGA 415 consensus_9543#2 CTTATAGACCATCATTTCTG---CCAAGTTTCGTGCAATTTGTAATGAT--TTTGGGAGA 336 consensus_9543#1 ACCAGCAGCTAGCCCTTTTGATCCCTCGCTCTTGCCATTTTTCATGACTGAAGTACAGGA 327 * * * * ** * ** * * ** * * ** consensus_9543#3 TCTCAGCTGAGAACCGA-AAAGGACAGAATCTGCTATTTCTCTACTTGTTAGTTGATATA 248 consensus_9543#4 TCTCATCTGAGAACCGA-AAAGGACATAATCCGCTATTTCTTTGCTTATTTGTTGATATA 138 consensus_9543#0 TCTCAGCTGAGAACCGA-AGAGGACAAAATCTGCCATTNCTCTGCTTGTTTGATGATATA 474 consensus_9543#2 TCTCAAGTTANAACCGA-AGTGGACAGAATCTGTCATTTCTCTGCTTGTT-GTTGTTATA 394 consensus_9543#1 ACCAACCTAATATTTATTAAACTGTCGGTTGTAATATTTGTGTCCCTGCATGCGAATCAG 387 * * * * * * * *** * * * * * * consensus_9543#3 CCTCTTGTTAGCTTTGATGGTTGAGATGTTGATAATCCCA----TGTAACTTGATGTTGT 304 consensus_9543#4 TTTCTTGTTAGCTTTGATGGTTGA--TGTTGATGATGCCAAATGTGTAACTTGATGTTAT 196 consensus_9543#0 CCTCTTGTTAGCTTTGATGGTTGA--TGTTGATGATGCCAAGTGTGTAACTTGATGCTGT 532 consensus_9543#2 CCTCTTGTTAGTTGCTATGGTTGT------------------------------------ 418 consensus_9543#1 CGCGCAGTGGTGGATGGCATCTGGGTCACCACCGGAGTCGACAGCGATGCGTTCCAGCTC 447 ** ** consensus_9543#3 ACC---TGTTGTGATGTGTCTTTAGATATTATAGAGAAGACTACATTTGTACCCATTGTT 361 consensus_9543#4 AGCTGCTGTTGTGATGTGCCTCTAGATGTTCTAGAGAAGACTCCATATGTACCCATTGTT 256 consensus_9543#0 AGNTGCTATTGAGATGTGCCTCTANATGTTCTAGAGAAGACTCCAATTGTACCCATTGTT 592 consensus_9543#2 ------TGTTGTGATGTGCCTCTAGATGTTCTAGAGAAGACTCCATTTGTACCCATTGTT 472 consensus_9543#1 CAGGACTGGCGCCA-GTGTCCACAT-CATTATCCCGTCCACCTTAGCCTCCCGCGCTGTA 505 * * * *** * * ** * * ** * * * *** consensus_9543#3 GA-TTATAGTGGAAGCTTGGAGTG----GACCGTTGGTCCCGTG-TTTTTTACTCCTCAC 415 consensus_9543#4 GA-TTATGG--------------------------------------------------- 264 consensus_9543#0 GA-TTATAGNGGAAGCTTGGAGTG----GACCGTTGGTCCCGNA-GTTTTT--TACTCAC 644 consensus_9543#2 GA-TTATAGTGGAAGTTTGGAGTG----GACCGTTGGTCCCGTGGTTTTTTACTCCTCAC 527 consensus_9543#1 GCCTTCCACAAGAACCTTTGGTTGCGGCGGCCATTGGGAGTGGGAGGACCGTGTGTTNGG 565 * ** consensus_9543#3 ACCGAGGAGGTTTTT-CCACGTAAATCACTGGTGTCTTGTGTCCATGT--TTTATTGTTA 472 consensus_9543#4 ------------------------------------------------------------ consensus_9543#0 ATCGAGGAGGTTTNTTCCACGTNAATCACCATATTCTTGNGTGTATGNGTTTTATTGNCT 704 consensus_9543#2 ACCGAGGAGGTTTTT-CTACATAAAAAAAAAAAAAAAAAAAAAAA--------------- 571 consensus_9543#1 ACTGAACCAAAACAC-CAAGTTTGGTGCCAATCCAACCACGTTTGAGCCTCTAATCGCTG 624 consensus_9543#3 TTCCGCTAC---TGATTTGTTAAGTTG--AAACTATCCTCAAA-GTTCATCCCAAAAAA- 525 consensus_9543#4 ------------------------------------------------------------ consensus_9543#0 ATTTGCATTGTTTGATTTGGCTAGNTNGAAAACTATCCTCNAAAGTTCANGGCAAGATGA 764 consensus_9543#2 ------------------------------------------------------------ consensus_9543#1 ACTTGATGAAGATCGGGTAAGAGCCTCGAGCCTGACAAGCTGCACTTCTTCTTCT----- 679 consensus_9543#3 -------------------------------------------- consensus_9543#4 -------------------------------------------- consensus_9543#0 TGGGNNTGATTCGNGCCGAAANACGTTTTGNCCGGCTTAGGNGA 808 consensus_9543#2 -------------------------------------------- consensus_9543#1 -------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||