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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9543#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 808 fasta sequence
[AAGGGGGGTAGCCTTTGATGTGAAGAAACAACCAACAAACACAAGAGAGGGAGAGGAGAGTGGAGAAGAAGAAGTGCAACNTTGTTCAGCTCGAGGCTCTTACCCGATCTTCATCAAGTCAGCGATTAGAGGCTCAAACGTGGTTGGATTGGCACCAAACTTGGTGAGTTTGTTCCTCACTTTGAGCACTTTAATCTGGCCAGTTTGGATGAGAATTGTTTGAGTAGAGCACCGGATTTGAGTAGTGGTTTATCAACTCGAGTTACTGAAATTACAGATTGTGCAACAATTAGTAAAGTGTCAGTTTGAGGGGTCAAACGGTGTCCGATTAAGCTGTTTTTTGGATAGCTTGGAAGGGACTCATAGACCATCATTTCTGCCATGTTTCATCAATTTGCATATGTGGTTTGAGAGATCTCAGCTGAGAACCGAAGAGGACAAAATCTGCCATTNCTCTGCTTGTTTGATGATATACCTCTTGTTAGCTTTGATGGTTGATGTTGATGATGCCAAGTGTGTAACTTGATGCTGTAGNTGCTATTGAGATGTGCCTCTANATGTTCTAGAGAAGACTCCAATTGTACCCATTGTTGATTATAGNGGAAGCTTGGAGTGGACCGTTGGTCCCGNAGTTTTTTACTCACATCGAGGAGGTTTNTTCCACGTNAATCACCATATTCTTGNGTGTATGNGTTTTATTGNCTATTTGCATTGTTTGATTTGGCTAGNTNGAAAACTATCCTCNAAAGTTCANGGCAAGATGATGGGNNTGATTCGNGCCGAAANACGTTTTGNCCGGCTTAGGNGA]
[+] EMBL CA765031 [AAGGGGGGTAGCCTTTGATGTGAAGAAACAACCAACAAACACAAGAGAGGGAGAGGAGAGTGGAGAAGAAGAAGTGCAACNTTGTTCAGCTCGAGGCTCTTACCCGATCTTCATCAAGTCAGCGATTAGAGGCTCAAACGTGGTTGGATTGGCACCAAACTTGGTGAGTTTGTTCCTCACTTTGAGCACTTTAATCTGGCCAGTTTGGATGAGAATTGTTTGAGTAGAGCACCGGATTTGAGTAGTGGTTTATCAACTCGAGTTACTGAAATTACAGATTGTGCAACAATTAGTAAAGTGTCAGTTTGAGGGGTCAAACGGTGTCCGATTAAGCTGTTTTTTGGATAGCTTGGAAGGGACTCATAGACCATCATTTCTGCCATGTTTCATCAATTTGCATATGTGGTTTGAGAGATCTCAGCTGAGAACCGAAGAGGACAAAATCTGCCATTNCTCTGCTTGTTTGATGATATACCTCTTGTTAGCTTTGATGGTTGATGTTGATGATGCCAAGTGTGTAACTTGATGCTGTAGNTGCTATTGAGATGTGCCTCTANATGTTCTAGAGAAGACTCCAATTGTACCCATTGTTGATTATAGNGGAAGCTTGGAGTGGACCGTTGGTCCCGNAGTTTTTTACTCACATCGAGGAGGTTTNTTCCACGTNAATCACCATATTCTTGNGTGTATGNGTTTTATTGNCTATTTGCATTGTTTGATTTGGCTAGNTNGAAAACTATCCTCNAAAGTTCANGGCAAGATGATGGGNNTGATTCGNGCCGAAANACGTTTTGNCCGGCTTAGGNGA]
consensusID : consensus_9543#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence
[TTTTTTTTTTTTTTTAATTAAGATGGACTTCATCAGCTAATTAAAAGAAATATAATAAAGTATACGGCACCTTTGTCTAATCCTGATCTTAAGTGTTACTTATCAATTTAATTAGTAGACCTGCTTCCTCATAACATAAACAAGATACAGATCATTCAAGTCGGCAGCTCCACGTGCATAGAGCCAACCTGAATTAATTAACTTATTCTTCTTCTTGACCACAATATCAGCAGCATCACAGTATGTTTGCTGACACCATGGAAAAACACCAGCAGCTAGCCCTTTTGATCCCTCGCTCTTGCCATTTTTCATGACTGAAGTACAGGAACCAACCTAATATTTATTAAACTGTCGGTTGTAATATTTGTGTCCCTGCATGCGAATCAGCGCGCAGTGGTGGATGGCATCTGGGTCACCACCGGAGTCGACAGCGATGCGTTCCAGCTCCAGGACTGGCGCCAGTGTCCACATCATTATCCCGTCCACCTTAGCCTCCCGCGCTGTAGCCTTCCACAAGAACCTTTGGTTGCGGCGGCCATTGGGAGTGGGAGGACCGTGTGTTNGGACTGAACCAAAACACCAAGTTTGGTGCCAATCCAACCACGTTTGAGCCTCTAATCGCTGACTTGATGAAGATCGGGTAAGAGCCTCGAGCCTGACAAGCTGCACTTCTTCTTCT]
[+] EMBL CA761895 [TTTTTTTTTTTTTTTAATTAAGATGGACTTCATCAGCTAATTAAAAGAAATATAATAAAGTATACGGCACCTTTGTCTAATCCTGATCTTAAGTGTTACTTATCAATTTAATTAGTAGACCTGCTTCCTCATAACATAAACAAGATACAGATCATTCAAGTCGGCAGCTCCACGTGCATAGAGCCAACCTGAATTAATTAACTTATTCTTCTTCTTGACCACAATATCAGCAGCATCACAGTATGTTTGCTGACACCATGGAAAAACACCAGCAGCTAGCCCTTTTGATCCCTCGCTCTTGCCATTTTTCATGACTGAAGTACAGGAACCAACCTAATATTTATTAAACTGTCGGTTGTAATATTTGTGTCCCTGCATGCGAATCAGCGCGCAGTGGTGGATGGCATCTGGGTCACCACCGGAGTCGACAGCGATGCGTTCCAGCTCCAGGACTGGCGCCAGTGTCCACATCATTATCCCGTCCACCTTAGCCTCCCGCGCTGTAGCCTTCCACAAGAACCTTTGGTTGCGGCGGCCATTGGGAGTGGGAGGACCGTGTGTTNGGACTGAACCAAAACACCAAGTTTGGTGCCAATCCAACCACGTTTGAGCCTCTAATCGCTGACTTGATGAAGATCGGGTAAGAGCCTCGAGCCTGACAAGCTGCACTTCTTCTTCT]
consensusID : consensus_9543#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 571 fasta sequence
[AGATTTTNAGTTTGGTGACTCTAACCCGGTCTTCATCAAGTCAGCGATTGGAAGGTCAAACGTGCTTGGTTCAATACCAAACTTGGTGAGTTTATTTCTCACTTGGTGAACTTCAATCTGGCCAGTTTTGGTGGGAATTGGTTGAGTAGAGCATCAGATTTGGGTATGGTTTCTTCAGCTCGAGTAACCGCAGTTTCAGCGTGTACAGTCTGTGGTAGAATGTCAGTTTGAGGGGTCAAACGGTGTCTGATTGGGCTGGTTTTTGGATAGCTTGGAAGGGACTTATAGACCATCATTTCTGCCAAGTTTCGTGCAATTTGTAATGATTTTGGGAGATCTCAAGTTANAACCGAAGTGGACAGAATCTGTCATTTCTCTGCTTGTTGTTGTTATACCTCTTGTTAGTTGCTATGGTTGTTGTTGTGATGTGCCTCTAGATGTTCTAGAGAAGACTCCATTTGTACCCATTGTTGATTATAGTGGAAGTTTGGAGTGGACCGTTGGTCCCGTGGTTTTTTACTCCTCACACCGAGGAGGTTTTTCTACATAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL C27908 [AGATTTTNAGTTTGGTGACTCTAACCCGGTCTTCATCAAGTCAGCGATTGGAAGGTCAAACGTGCTTGGTTCAATACCAAACTTGGTGAGTTTATTTCTCACTTGGTGAACTTCAATCTGGCCAGTTTTGGTGGGAATTGGTTGAGTAGAGCATCAGATTTGGGTATGGTTTCTTCAGCTCGAGTAACCGCAGTTTCAGCGTGTACAGTCTGTGGTAGAATGTCAGTTTGAGGGGTCAAACGGTGTCTGATTGGGCTGGTTTTTGGATAGCTTGGAAGGGACTTATAGACCATCATTTCTGCCAAGTTTCGTGCAATTTGTAATGATTTTGGGAGATCTCAAGTTAN ]
[+] EMBL AU092757 [ GATTTTCAGTTTGGTGACTCTAACCCGGTCTTCATCAAGTCAGCGATTGGAAGGTCAAACGTGCTTGGATCAATACCAAACTTGGTGAGTTTATTTCTCACTTGGTGAACTTCAATCTGGCCAGTTTTGGTGGGAATTGGTTGAGTAGAGCATCAGATTTGGGTATGGTTTCTTCAGCTCGAGTAACCGCAGTTTCAGCGTGTACAGTCTGTGGTAGAATGTCAGTTTGAGGGGTCAAACGGTGTCTGATTGGGCTGGTTTTTGGATAGCTTGGAAGGGACTTATAGACCATCATTTCTGCCAAGTTTCGTGCAATTTGT ATGA TTTGGGAGATCTCAGCTAAGAACCGAAGTGGACAGAATCTGTCATTTCTCTGCTTGTTGTTGTTATACCTCTTGTTAGTTGCTATGGTTGTTGTTGTGATGTGCCTCTAGATGTTCTAGAGAAGACTCCATTTGTACCCATTGTTGATTATAGTGGAAGTTTGGAGTGGACCGTTGGTCCCGTGGTTTTTTACTCCTCACACCGAGGAGGTTTTTCTACATAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_9543#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 525 fasta sequence
[ATTATTGGATTAGACCTTCGAATTTGATTGTGTTTTTCAGCTCGATCACTAAAATCCAGATTGCCAAATAGTTAATAAAGTGTCGGCTTTAAAGGTCAAACCGGTGTCCGATTAGCCTGTTTTTTGACAGCTTGGAAGGGAATCATAGACCATCATTTCTCCAAGTTTCGTGCAACTGTGGTTTGGAGATCTCAGCTGAGAACCGAAAAGGACAGAATCTGCTATTTCTCTACTTGTTAGTTGATATACCTCTTGTTAGCTTTGATGGTTGAGATGTTGATAATCCCATGTAACTTGATGTTGTACCTGTTGTGATGTGTCTTTAGATATTATAGAGAAGACTACATTTGTACCCATTGTTGATTATAGTGGAAGCTTGGAGTGGACCGTTGGTCCCGTGTTTTTTACTCCTCACACCGAGGAGGTTTTTCCACGTAAATCACTGGTGTCTTGTGTCCATGTTTTATTGTTATTCCGCTACTGATTTGTTAAGTTGAAACTATCCTCAAAGTTCATCCCAAAAAA]
[+] EMBL BI799604 [ATTATTGGATTAGACCTTCGAATTTGATTGTGTTTTTCAGCTCGATCACTAAAATCCAGATTGCCAAATAGTTAATAAAGTGTCGGCTTTAAAGGTCAAACCGGTGTCCGATTAGCCTGTTTTTTGACAGCTTGGAAGGGAATCATAGACCATCATTTCTCCAAGTTTCGTGCAACTGTGGTTTGGAGATCTCAGCTGAGAACCGAAAAGGACAGAATCTGCTATTTCTCTACTTGTTAGTTGATATACCTCTTGTTAGCTTTGATGGTTGAGATGTTGATAATCCCATGTAACTTGATGTTGTACCTGTTGTGATGTGTCTTTAGATATTATAGAGAAGACTACATTTGTACCCATTGTTGATTATAGTGGAAGCTTGGAGTGGACCGTTGGTCCCGTGTTTTTTACTCCTCACACCGAGGAGGTTTTTCCACGTAAATCACTGGTGTCTTGTGTCCATGTTTTATTGTTATTCCGCTACTGATTTGTTAAGTTGAAACTATCCTCAAAGTTCATCCCAAAAAA]
consensusID : consensus_9543#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 264 fasta sequence
[TTTTTGGATATCTTGGAAGGGACTCATAGACCATCATTTTTGCCAAGTTTAGTGCAATTTGCATCTGTGGTTTGGGAGATCTCATCTGAGAACCGAAAAGGACATAATCCGCTATTTCTTTGCTTATTTGTTGATATATTTCTTGTTAGCTTTGATGGTTGATGTTGATGATGCCAAATGTGTAACTTGATGTTATAGCTGCTGTTGTGATGTGCCTCTAGATGTTCTAGAGAAGACTCCATATGTACCCATTGTTGATTATGG]
[-] EMBL AU165164 [TTTTTGGATATCTTGGAAGGGACTCATAGACCATCATTTTTGCCAAGTTTAGTGCAATTTGCATCTGTGGTTTGGGAGATCTCATCTGAGAACCGAAAAGGACATAATCCGCTATTTCTTTGCTTATTTGTTGATATATTTCTTGTTAGCTTTGATGGTTGATGTTGATGATGCCAAATGTGTAACTTGATGTTATAGCTGCTGTTGTGATGTGCCTCTAGATGTTCTAGAGAAGACTCCATATGTACCCATTGTTGATTATGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9543#3 ------------------------------------------------------------
consensus_9543#4 ------------------------------------------------------------
consensus_9543#0 AAGGGGGGTAGCCTTTGATGTGAAGAAACAACCAACAAACACAAGAGAGGGAGAGGAGAG 60
consensus_9543#2 ------------------------------------------------------------
consensus_9543#1 ------------------------------------------------------------
consensus_9543#3 ------------------------------------------------------------
consensus_9543#4 ------------------------------------------------------------
consensus_9543#0 TGGAGAAGAAGAAGTGCAACNTTGTTCAGCTCGAGGCTCTTACCCGATCTTCATCAAGTC 120
consensus_9543#2 ------------------AGATTTTNAGTTTGGTGACTCTAACCCGGTCTTCATCAAGTC 42
consensus_9543#1 ---------------------TTTTTTTTTTTTTTTAATTAAGATGGACTTCATCAGCT- 38
consensus_9543#3 ------------------------------------------------------------
consensus_9543#4 ------------------------------------------------------------
consensus_9543#0 AGCGATTAGAGGCTCAAACGTGGTTGGATTGGCACCAAACTTGGTGAGTTTGTTCCTCAC 180
consensus_9543#2 AGCGATTGGAAGGTCAAACGTGCTTGGTTCAATACCAAACTTGGTGAGTTTATTTCTCAC 102
consensus_9543#1 ---AATTAAAAG---AAATATAATAAAGTATACGGCACCTTTGTCTAATCCTGATCTTAA 92
consensus_9543#3 ----------------------------------ATTATTGGATTAGACCTTCGAATTTG 26
consensus_9543#4 ------------------------------------------------------------
consensus_9543#0 TTTGAGCACTTTAATCTGGCCAGTTTGGATGAGAATTGTTTGAGTAGAGCACCGGATTTG 240
consensus_9543#2 TTGGTGAACTTCAATCTGGCCAGTTTTGGTGGGAATTGGTTGAGTAGAGCATCAGATTTG 162
consensus_9543#1 GTGTTACTTATCAATTTAATTAGTAGACCTGCTTCCTCATAACATAAA-CAAGATACAGA 151
consensus_9543#3 ATTGT--GTTTTTCAGCTCGA-TCACTAAAATC-CAGATTGCCAAATAGTTAATAAAGTG 82
consensus_9543#4 ------------------------------------------------------------
consensus_9543#0 AGTAGTGGTTTATCAACTCGAGTTACTGAAATTACAGATTGTGCAACAATTAGTAAAGTG 300
consensus_9543#2 GGTATGGTTTCTTCAGCTCGAGTAACCGCAGTTTCAGCGTGTACAGTCTGTGGTAGAATG 222
consensus_9543#1 TCATTCAAGTCGGCAGCTCCACGTGCATAGAGC---CAACCTGAATTAATTAACTTATTC 208
consensus_9543#3 TCGGCTTTAAAGGTCAAACCGGTGTCCGATTAGCCTGTTTTTTG-ACAGCTTGGAAGGGA 141
consensus_9543#4 -------------------------------------TTTTTGG-ATATCTTGGAAGGGA 22
consensus_9543#0 TCAGTTTGAGGGGTCAAAC-GGTGTCCGATTAAGCTGTTTTTTGGATAGCTTGGAAGGGA 359
consensus_9543#2 TCAGTTTGAGGGGTCAAAC-GGTGTCTGATTGGGCTGGTTTTTGGATAGCTTGGAAGGGA 281
consensus_9543#1 TTCTTCTTGACCACAATATCAGCAGCATCACAGTATGTTTGCTG-ACACCATGGAAAAAC 267
** * * * * *****
consensus_9543#3 ATCATAGACCATCATTTCT----CCAAGTTTCGTGCAA-------CTGTGGTTTGG-AGA 189
consensus_9543#4 CTCATAGACCATCATTTTTG---CCAAGTTTAGTGCAATTTGCATCTGTGGTTTGGGAGA 79
consensus_9543#0 CTCATAGACCATCATTTCTG---CCATGTTTCAT-CAATTTGCATATGTGGTTTGAGAGA 415
consensus_9543#2 CTTATAGACCATCATTTCTG---CCAAGTTTCGTGCAATTTGTAATGAT--TTTGGGAGA 336
consensus_9543#1 ACCAGCAGCTAGCCCTTTTGATCCCTCGCTCTTGCCATTTTTCATGACTGAAGTACAGGA 327
* * * * ** * ** * * ** * * **
consensus_9543#3 TCTCAGCTGAGAACCGA-AAAGGACAGAATCTGCTATTTCTCTACTTGTTAGTTGATATA 248
consensus_9543#4 TCTCATCTGAGAACCGA-AAAGGACATAATCCGCTATTTCTTTGCTTATTTGTTGATATA 138
consensus_9543#0 TCTCAGCTGAGAACCGA-AGAGGACAAAATCTGCCATTNCTCTGCTTGTTTGATGATATA 474
consensus_9543#2 TCTCAAGTTANAACCGA-AGTGGACAGAATCTGTCATTTCTCTGCTTGTT-GTTGTTATA 394
consensus_9543#1 ACCAACCTAATATTTATTAAACTGTCGGTTGTAATATTTGTGTCCCTGCATGCGAATCAG 387
* * * * * * * *** * * * * * *
consensus_9543#3 CCTCTTGTTAGCTTTGATGGTTGAGATGTTGATAATCCCA----TGTAACTTGATGTTGT 304
consensus_9543#4 TTTCTTGTTAGCTTTGATGGTTGA--TGTTGATGATGCCAAATGTGTAACTTGATGTTAT 196
consensus_9543#0 CCTCTTGTTAGCTTTGATGGTTGA--TGTTGATGATGCCAAGTGTGTAACTTGATGCTGT 532
consensus_9543#2 CCTCTTGTTAGTTGCTATGGTTGT------------------------------------ 418
consensus_9543#1 CGCGCAGTGGTGGATGGCATCTGGGTCACCACCGGAGTCGACAGCGATGCGTTCCAGCTC 447
** **
consensus_9543#3 ACC---TGTTGTGATGTGTCTTTAGATATTATAGAGAAGACTACATTTGTACCCATTGTT 361
consensus_9543#4 AGCTGCTGTTGTGATGTGCCTCTAGATGTTCTAGAGAAGACTCCATATGTACCCATTGTT 256
consensus_9543#0 AGNTGCTATTGAGATGTGCCTCTANATGTTCTAGAGAAGACTCCAATTGTACCCATTGTT 592
consensus_9543#2 ------TGTTGTGATGTGCCTCTAGATGTTCTAGAGAAGACTCCATTTGTACCCATTGTT 472
consensus_9543#1 CAGGACTGGCGCCA-GTGTCCACAT-CATTATCCCGTCCACCTTAGCCTCCCGCGCTGTA 505
* * * *** * * ** * * ** * * * ***
consensus_9543#3 GA-TTATAGTGGAAGCTTGGAGTG----GACCGTTGGTCCCGTG-TTTTTTACTCCTCAC 415
consensus_9543#4 GA-TTATGG--------------------------------------------------- 264
consensus_9543#0 GA-TTATAGNGGAAGCTTGGAGTG----GACCGTTGGTCCCGNA-GTTTTT--TACTCAC 644
consensus_9543#2 GA-TTATAGTGGAAGTTTGGAGTG----GACCGTTGGTCCCGTGGTTTTTTACTCCTCAC 527
consensus_9543#1 GCCTTCCACAAGAACCTTTGGTTGCGGCGGCCATTGGGAGTGGGAGGACCGTGTGTTNGG 565
* **
consensus_9543#3 ACCGAGGAGGTTTTT-CCACGTAAATCACTGGTGTCTTGTGTCCATGT--TTTATTGTTA 472
consensus_9543#4 ------------------------------------------------------------
consensus_9543#0 ATCGAGGAGGTTTNTTCCACGTNAATCACCATATTCTTGNGTGTATGNGTTTTATTGNCT 704
consensus_9543#2 ACCGAGGAGGTTTTT-CTACATAAAAAAAAAAAAAAAAAAAAAAA--------------- 571
consensus_9543#1 ACTGAACCAAAACAC-CAAGTTTGGTGCCAATCCAACCACGTTTGAGCCTCTAATCGCTG 624
consensus_9543#3 TTCCGCTAC---TGATTTGTTAAGTTG--AAACTATCCTCAAA-GTTCATCCCAAAAAA- 525
consensus_9543#4 ------------------------------------------------------------
consensus_9543#0 ATTTGCATTGTTTGATTTGGCTAGNTNGAAAACTATCCTCNAAAGTTCANGGCAAGATGA 764
consensus_9543#2 ------------------------------------------------------------
consensus_9543#1 ACTTGATGAAGATCGGGTAAGAGCCTCGAGCCTGACAAGCTGCACTTCTTCTTCT----- 679
consensus_9543#3 --------------------------------------------
consensus_9543#4 --------------------------------------------
consensus_9543#0 TGGGNNTGATTCGNGCCGAAANACGTTTTGNCCGGCTTAGGNGA 808
consensus_9543#2 --------------------------------------------
consensus_9543#1 --------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||