cluster # 9545

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 9545 cluster # 9545 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9545#0 length = 1579 sequences # 2

consensus_9545#1 length = 436 sequences # 4

consensusID : consensus_9545#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1579
fasta sequence

                              [CCTCGTAGGCTGATTGGTTTGAATACTTGAATGGTCAAGAGAATGCAAAATTCTTTATGAATGGAACCGTGCAGGGTAACGTACTTTTCTTGAGCACATCCAGCAGTAGCATCTTGGTATCAGTGAAGAACTGTGTATCCGTTTCATACCTCAGTGTGCACCACACCCCAAGAATGGCCGCTCCCATCTGGGTAGTGCTAATCTTGCTCTGCCTGCCTGAGATGATACCATCCAGGCAGTTCATGCATTGCTCCGATGGCATGCCCTGCATGCACTGCACTAGCCCATACACCGTCTGTCCTGTCTCCTCAAACCTCTGTTTGCCTACTGCATACCTCTCTGGTCGACTCACTGCAGCATCAGTAAGTGCACGCAGCACCTTGGTGACAAGATCCTCAAATTGCTTAGCCACAGAAGCTGTCACAGCATTCAGGTTAGTATTCACAGTGCACTCCGGCACATTTGTGAAGCTGGAGATAAAATCCTGGTTGGAGAAGTGTATCCTGGCCTGGTCTTGGTTGTAATAGTAGGTCACCTTCTTGGTCATGGCCTTGGGAGAGTAAGAGTTGCTGTTTTTGCTGTTGATGGCTGCATCAAGGGCCTCAGTTAGGTGCTTGCGACAATCGGAGCCATCAGAATCGCCTCGACAAGAAACTGCACCATAGACTTTGTCCAGGCCTGTGCCGGCCATGCCAGTAGCTGAGTGCAGCTCTGTGGCATTAGCAATGAGCGTTGCGGCAAGGGAGATAAGGTTGGATTTGTAGGTACTGTTTGGCATGTAAATGGCGCCATTATAGTCACTGCAGAGTTCCTGGCCGACAGATGGTGCTGGGCAGGAGATGAAGAGAACTAGGAGAGACAATAGCAGCATACTGCAGTAACTAGAGAGCAATGGAAAAGCTTTGCTTGTGGATCGTCATGGATGAGTTCCAAATACCATCTTGGTTTTGTCTACCAAGAGAGTTGTAGTTAGACTTTTCCTTGAAATAGGATTTGGCAGATGGTGATGTTTCAAGGAGGGATAGCTCCAGAAACAGCGATTATTCGATCTGGGAACCTGACATTCACTTTCCTCCATCATCGGCTGTGGACTTCCTCTATACAGGGGATGTCATCGCTGCTAAGCATAGCAACAACATCAGACATGGTGGGGCGCTCCGCTGATTTCTCTTGAACACACATTAGTGCCACCACAAGACATTTCATCATTTCTCCAGGAAACAGAAAAACAGGCGTGTGCAGATGATGGAAAGAGAGTAAACAGTAGCAATGATCAAGATTGCATGTCCCTTCTTTTGCCCTGAATTTTGAAACATAGAATGGTTTACATGTAGTGAATGAATCAGTTCTACAATATCAAAGACTTAGCTCCTGAATTTTGCTAAGATAGTGTGCCTTACGGTTGGATTCAAGTGTTCGTTTCTTTCTTTTTGGCCAAATTGATCAGCTAAATTGAATCTTAATTTGTACCATACCGAAAGGATTCATCTTAAACTTTCAGTCAATATATACATGTAAAATATACATATTTGGCAAGCAGAGTAGCATGCAGTCCTTTTTATAAAAAAAAAAAAAAAAA]

[+] EMBL AK064206             [CCTCGTAGGCTGATTGGTTTGAATACTTGAATGGTCAAGAGAATGCAAAATTCTTTATGAATGGAACCGTGCAGGGTAACGTACTTTTCTTGAGCACATCCAGCAGTAGCATCTTGGTATCAGTGAAGAACTGTGTATCCGTTTCATACCTCAGTGTGCACCACACCCCAAGAATGGCCGCTCCCATCTGGGTAGTGCTAATCTTGCTCTGCCTGCCTGAGATGATACCATCCAGGCAGTTCATGCATTGCTCCGATGGCATGCCCTGCATGCACTGCACTAGCCCATACACCGTCTGTCCTGTCTCCTCAAACCTCTGTTTGCCTACTGCATACCTCTCTGGTCGACTCACTGCAGCATCAGTAAGTGCACGCAGCACCTTGGTGACAAGATCCTCAAATTGCTTAGCCACAGAAGCTGTCACAGCATTCAGGTTAGTATTCACAGTGCACTCCGGCACATTTGTGAAGCTGGAGATAAAATCCTGGTTGGAGAAGTGTATCCTGGCCTGGTCTTGGTTGTAATAGTAGGTCACCTTCTTGGTCATGGCCTTGGGAGAGTAAGAGTTGCTGTTTTTGCTGTTGATGGCTGCATCAAGGGCCTCAGTTAGGTGCTTGCGACAATCGGAGCCATCAGAATCGCCTCGACAAGAAACTGCACCATAGACTTTGTCCAGGCCTGTGCCGGCCATGCCAGTAGCTGAGTGCAGCTCTGTGGCATTAGCAATGAGCGTTGCGGCAAGGGAGATAAGGTTGGATTTGTAGGTACTGTTTGGCATGTAAATGGCGCCATTATAGTCACTGCAGAGTTCCTGGCCGACAGATGGTGCTGGGCAGGAGATGAAGAGAACTAGGAGAGACAATAGCAGCATACTGCAGTAACTAGAGAGCAATGGAAAAGCTTTGCTTGTGGATCGTCATGGATGAGTTCCAAATACCATCTTGGTTTTGTCTACCAAGAGAGTTGTAGTTAGACTTTTCCTTGAAATAGGATTTGGCAGATGGTGATGTTTCAAGGAGGGATAGCTCCAGAAACAGCGATTATTCGATCTGGGAACCTGACATTCACTTTCCTCCATCATCGGCTGTGGACTTCCTCTATACAGGGGATGTCATCGCTGCTAAGCATAGCAACAACATCAGACATGGTGGGGCGCTCCGCTGATTTCTCTTGAACACACATTAGTGCCACCACAAGACATTTCATCATTTCTCCAGGAAACAGAAAAACAGGCGTGTGCAGATGATGGAAAGAGAGTAAACAGTAGCAATGATCAAGATTGCATGTCCCTTCTTTTGCCCTGAATTTTGAAACATAGAATGGTTTACATGTAGTGAATGAATCAGTTCTACAATATCAAAGACTTAGCTCCTGAATTTTGCTAAGATAGTGTGCCTTACGGTTGGATTCAAGTGTTCGTTTCTTTCTTTTTGGCCAAATTGATCAGCTAAATTGAATCTTAATTTGTACCATACCGAAAGGATTCATCTTAAACTTTCAGTCAATATATACATGTA                                                              ]
[+] EMBL AU093203             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TCCTGAATTTTGCTAAGATAGTGTNCCTTACGGTTGGATTCAAGTGTTCGTTTCTTTCTTTTTGGCCAAATTGATCAGNTAAATTGAATCTTAATTTGTACCATACCGAAAGGATTCATCTTAAACTTTCAGTCAATATATACATGTAAAATATACATATTTGGCAAGCAGAGTAGCATGCAGTCCTTTTTATAAAAAAAAAAAAAAAAA]




>consensus_9545#0
CCTCGTAGGCTGATTGGTTTGAATACTTGAATGGTCAAGAGAATGCAAAATTCTTTATGA
ATGGAACCGTGCAGGGTAACGTACTTTTCTTGAGCACATCCAGCAGTAGCATCTTGGTAT
CAGTGAAGAACTGTGTATCCGTTTCATACCTCAGTGTGCACCACACCCCAAGAATGGCCG
CTCCCATCTGGGTAGTGCTAATCTTGCTCTGCCTGCCTGAGATGATACCATCCAGGCAGT
TCATGCATTGCTCCGATGGCATGCCCTGCATGCACTGCACTAGCCCATACACCGTCTGTC
CTGTCTCCTCAAACCTCTGTTTGCCTACTGCATACCTCTCTGGTCGACTCACTGCAGCAT
CAGTAAGTGCACGCAGCACCTTGGTGACAAGATCCTCAAATTGCTTAGCCACAGAAGCTG
TCACAGCATTCAGGTTAGTATTCACAGTGCACTCCGGCACATTTGTGAAGCTGGAGATAA
AATCCTGGTTGGAGAAGTGTATCCTGGCCTGGTCTTGGTTGTAATAGTAGGTCACCTTCT
TGGTCATGGCCTTGGGAGAGTAAGAGTTGCTGTTTTTGCTGTTGATGGCTGCATCAAGGG
CCTCAGTTAGGTGCTTGCGACAATCGGAGCCATCAGAATCGCCTCGACAAGAAACTGCAC
CATAGACTTTGTCCAGGCCTGTGCCGGCCATGCCAGTAGCTGAGTGCAGCTCTGTGGCAT
TAGCAATGAGCGTTGCGGCAAGGGAGATAAGGTTGGATTTGTAGGTACTGTTTGGCATGT
AAATGGCGCCATTATAGTCACTGCAGAGTTCCTGGCCGACAGATGGTGCTGGGCAGGAGA
TGAAGAGAACTAGGAGAGACAATAGCAGCATACTGCAGTAACTAGAGAGCAATGGAAAAG
CTTTGCTTGTGGATCGTCATGGATGAGTTCCAAATACCATCTTGGTTTTGTCTACCAAGA
GAGTTGTAGTTAGACTTTTCCTTGAAATAGGATTTGGCAGATGGTGATGTTTCAAGGAGG
GATAGCTCCAGAAACAGCGATTATTCGATCTGGGAACCTGACATTCACTTTCCTCCATCA
TCGGCTGTGGACTTCCTCTATACAGGGGATGTCATCGCTGCTAAGCATAGCAACAACATC
AGACATGGTGGGGCGCTCCGCTGATTTCTCTTGAACACACATTAGTGCCACCACAAGACA
TTTCATCATTTCTCCAGGAAACAGAAAAACAGGCGTGTGCAGATGATGGAAAGAGAGTAA
ACAGTAGCAATGATCAAGATTGCATGTCCCTTCTTTTGCCCTGAATTTTGAAACATAGAA
TGGTTTACATGTAGTGAATGAATCAGTTCTACAATATCAAAGACTTAGCTCCTGAATTTT
GCTAAGATAGTGTGCCTTACGGTTGGATTCAAGTGTTCGTTTCTTTCTTTTTGGCCAAAT
TGATCAGCTAAATTGAATCTTAATTTGTACCATACCGAAAGGATTCATCTTAAACTTTCA
GTCAATATATACATGTAAAATATACATATTTGGCAAGCAGAGTAGCATGCAGTCCTTTTT
ATAAAAAAAAAAAAAAAAA

consensusID : consensus_9545#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 436
fasta sequence

                              [TGTNGNGGAAAAATCATACAAGGAGAACTCTGAACCAGCATCTTCTATCTTCCAAAGCCGCATAACTTCATCCATGAAACAGAAAAACAGGCGTGTGCAGATGATGGAAAGAGAGTAAACAGTAGCAATGATCAAGATTGCATGTCCCTTCTTTTGCCCTGAATTTTGAAACATAGAATGGTTTACATGTAGTGAATGAATCAGTTCTACAATATCAAAGACTTAGCTCCTGAATTTTGCTAAGATAGTGTGCCTTACGGTTGGATTCAAGTGTTCGTTTCTTTCTTTTTGGCCAAATTGATCAGCTAAATTGAATCTTAATTTGTACCATACCGAAAGGATTCATCTTAAACTTTCAGTCAATATATACATGTAAAATATACATATTTGGCAAGCAGAGTAGCATGCAGTCCTTTTTATAAAAAAAAAAAAAAAA]

[+] EMBL AU161475             [ GTNGNGGAAAAATCATACAAGGAGAACTCTGAACCAGCATCTTCTATCTTCCAAAGCCGCATAACTTCATCCATGAAACAGAAAAACAGGCGTGTGCAGATGATGGAAAGAGAGTAAACAGTAGCAATGATCAAGATTGCATGTCCCTTCTTTTGCCCTGAATTTTGAAACATAGAATGGTTTACATGTAGTGAATGAATCAGTTCTACAATATCAAAGACTTAGCTCCTGAATTTTGCTAAGATAGTGTGCCTTACGGTTGGATTCAAGTGTTCGTTTCTTTCTTTTTGGCCAAATTGATCAGCTAAATTGAATCTTAATTTGTACCATACCGAAAGGATTCATCTTAAACTTTCAGTCAATATATACATGTAAAATATACATATTTGGCAAGCAGAGTAGCATGCAGTCCTTTTTATAAAAAAAAAAAAAAAA]
[+] EMBL OS1347A              [tngNGNGNAAAAATCATACAAGGAGAACTCTGAACCAGCATCTTCTATCTTCCAAAGCCGCATAACTTCATCCATGAAACAGAAAAACAGGCGTGTGCAGATGATGGAAAGAGAGTAAACAGTAGCAATGATCAAGATTGCATGTCCCTTCTTTTGCCCTGAATTTTGAAACATAGAATGGTTTACATGTAGTGAATGAATCAGTTCTACAATATCAAAGACTTAGCTCCTGAATTTTGCTAAGATAGTGTGCCTTACGGTTGGATTCAAGTGTTCGTTTCTTTCTTTTTGGCCAAATTGATCAGCTAAATTGAATCTTAATTTGTACCATACCGAAAGGATTCATCTTAAACTTTCAGTCAATATATACATGTAA                                                            ]
[+] EMBL OS1360A              [  tgcgnGAAAAATCATACAAGGAGAACTCTGAACCAGCATCTTCTATCTTCCAAAGCCGCATAACTTCATCCATGAAACAGAAAAACAGGCGTGTGCAGATGATGGAAAGAGAGTAAACAGTAGCAATGATCAAGATTGCATGTCCCTTCTTTTGCCCTGAATTTTGAAACATAGAATGGTTTACATGTAGTGAATGAATCAGTTCTACAATATCAAAGACTTAGCTCCTGAATTTTGCTAAGATAGTGTGCCTTACGGTTGGATTCAAGTGTTCGTTTCTTTCTTTTTGGCCAAATTGATCAGCTAAATTGAATCTTAATTTGTACCATACCGAAAGGATTCATCTTAAACTTTCAGTCAATATATACATGTAAAATATACATATTTGGCAAGCAGAGTAG                                 ]
[+] EMBL C98268               [             TCATACAAGGAGAACTCTGAACCAGCATCTTCTATCTTCCAAAGCCGCATAACTTCATCCATGAAACAGAAAAACAGGCGTGTGCAGATGATGGAAAGAGAGTAAACAGTAGCAATGATCAAGATTGCATGTCCCTTCTTTTGCCCTGAATTTTGAAACATAGAATGGTTTACATGTAGTGAATGAATCAGTTCTACAATATCAAAGACTTAGCTCCTGAATTTTGCTAAGATAGTGTGCCTTACGGTTGGATTCAAGTGTTCGTTTCTTTCTTTTTGGCCAAATTGATCAGCTAAATTGAATCTTAATTTGTACCATACCGAAAGGATTCATCTTAAACTTTCAGTCAATATATACATGTAAAATATACATATTTGGCAAGCAGAGTAGCATGCAGTCCTTTTTATAAAAAAAAAAAAAAAA]




>consensus_9545#1
TGTNGNGGAAAAATCATACAAGGAGAACTCTGAACCAGCATCTTCTATCTTCCAAAGCCG
CATAACTTCATCCATGAAACAGAAAAACAGGCGTGTGCAGATGATGGAAAGAGAGTAAAC
AGTAGCAATGATCAAGATTGCATGTCCCTTCTTTTGCCCTGAATTTTGAAACATAGAATG
GTTTACATGTAGTGAATGAATCAGTTCTACAATATCAAAGACTTAGCTCCTGAATTTTGC
TAAGATAGTGTGCCTTACGGTTGGATTCAAGTGTTCGTTTCTTTCTTTTTGGCCAAATTG
ATCAGCTAAATTGAATCTTAATTTGTACCATACCGAAAGGATTCATCTTAAACTTTCAGT
CAATATATACATGTAAAATATACATATTTGGCAAGCAGAGTAGCATGCAGTCCTTTTTAT
AAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9545#0      CCTCGTAGGCTGATTGGTTTGAATACTTGAATGGTCAAGAGAATGCAAAATTCTTTATGA 60
consensus_9545#1      ------------------------------------------------------------
                                                                                  

consensus_9545#0      ATGGAACCGTGCAGGGTAACGTACTTTTCTTGAGCACATCCAGCAGTAGCATCTTGGTAT 120
consensus_9545#1      ------------------------------------------------------------
                                                                                  

consensus_9545#0      CAGTGAAGAACTGTGTATCCGTTTCATACCTCAGTGTGCACCACACCCCAAGAATGGCCG 180
consensus_9545#1      ------------------------------------------------------------
                                                                                  

consensus_9545#0      CTCCCATCTGGGTAGTGCTAATCTTGCTCTGCCTGCCTGAGATGATACCATCCAGGCAGT 240
consensus_9545#1      ------------------------------------------------------------
                                                                                  

consensus_9545#0      TCATGCATTGCTCCGATGGCATGCCCTGCATGCACTGCACTAGCCCATACACCGTCTGTC 300
consensus_9545#1      ------------------------------------------------------------
                                                                                  

consensus_9545#0      CTGTCTCCTCAAACCTCTGTTTGCCTACTGCATACCTCTCTGGTCGACTCACTGCAGCAT 360
consensus_9545#1      ------------------------------------------------------------
                                                                                  

consensus_9545#0      CAGTAAGTGCACGCAGCACCTTGGTGACAAGATCCTCAAATTGCTTAGCCACAGAAGCTG 420
consensus_9545#1      ------------------------------------------------------------
                                                                                  

consensus_9545#0      TCACAGCATTCAGGTTAGTATTCACAGTGCACTCCGGCACATTTGTGAAGCTGGAGATAA 480
consensus_9545#1      ------------------------------------------------------------
                                                                                  

consensus_9545#0      AATCCTGGTTGGAGAAGTGTATCCTGGCCTGGTCTTGGTTGTAATAGTAGGTCACCTTCT 540
consensus_9545#1      ------------------------------------------------------------
                                                                                  

consensus_9545#0      TGGTCATGGCCTTGGGAGAGTAAGAGTTGCTGTTTTTGCTGTTGATGGCTGCATCAAGGG 600
consensus_9545#1      ------------------------------------------------------------
                                                                                  

consensus_9545#0      CCTCAGTTAGGTGCTTGCGACAATCGGAGCCATCAGAATCGCCTCGACAAGAAACTGCAC 660
consensus_9545#1      ------------------------------------------------------------
                                                                                  

consensus_9545#0      CATAGACTTTGTCCAGGCCTGTGCCGGCCATGCCAGTAGCTGAGTGCAGCTCTGTGGCAT 720
consensus_9545#1      ------------------------------------------------------------
                                                                                  

consensus_9545#0      TAGCAATGAGCGTTGCGGCAAGGGAGATAAGGTTGGATTTGTAGGTACTGTTTGGCATGT 780
consensus_9545#1      ------------------------------------------------------------
                                                                                  

consensus_9545#0      AAATGGCGCCATTATAGTCACTGCAGAGTTCCTGGCCGACAGATGGTGCTGGGCAGGAGA 840
consensus_9545#1      ------------------------------------------------------------
                                                                                  

consensus_9545#0      TGAAGAGAACTAGGAGAGACAATAGCAGCATACTGCAGTAACTAGAGAGCAATGGAAAAG 900
consensus_9545#1      ------------------------------------------------------------
                                                                                  

consensus_9545#0      CTTTGCTTGTGGATCGTCATGGATGAGTTCCAAATACCATCTTGGTTTTGTCTACCAAGA 960
consensus_9545#1      ------------------------------------------------------------
                                                                                  

consensus_9545#0      GAGTTGTAGTTAGACTTTTCCTTGAAATAGGATTTGGCAGATGGTGATGTTTCAAGGAGG 1020
consensus_9545#1      ------------------------------------------------------------
                                                                                  

consensus_9545#0      GATAGCTCCAGAAACAGCGATTATTCGATCTGGGAACCTGACATTCACTTTCCTCCATCA 1080
consensus_9545#1      ------------------------------------------------------------
                                                                                  

consensus_9545#0      TCGGCTGTGGACTTCCTCTATACAGGGGATGTCATCGCTGCTAAGCATAGCAACAACATC 1140
consensus_9545#1      ------------------------------------------------------------
                                                                                  

consensus_9545#0      AGACATGGTGGGGCGCTCCGCTGATTTCTCTTGAACACACATTAGTGCCACCACAAGACA 1200
consensus_9545#1      TGTNGNGGAAAAATCATACAAGGAGAACTCT-GAACCAGCATC--TTCTATCTTCCAAAG 57
                       *    **        * *   **   **** ****   ***   * * * *     *  

consensus_9545#0      TTTCATCATTTC-TCCAGGAAACAGAAAAACAGGCGTGTGCAGATGATGGAAAGAGAGTA 1259
consensus_9545#1      CCGCATAACTTCATCCATGAAACAGAAAAACAGGCGTGTGCAGATGATGGAAAGAGAGTA 117
                         *** * *** **** ******************************************

consensus_9545#0      AACAGTAGCAATGATCAAGATTGCATGTCCCTTCTTTTGCCCTGAATTTTGAAACATAGA 1319
consensus_9545#1      AACAGTAGCAATGATCAAGATTGCATGTCCCTTCTTTTGCCCTGAATTTTGAAACATAGA 177
                      ************************************************************

consensus_9545#0      ATGGTTTACATGTAGTGAATGAATCAGTTCTACAATATCAAAGACTTAGCTCCTGAATTT 1379
consensus_9545#1      ATGGTTTACATGTAGTGAATGAATCAGTTCTACAATATCAAAGACTTAGCTCCTGAATTT 237
                      ************************************************************

consensus_9545#0      TGCTAAGATAGTGTGCCTTACGGTTGGATTCAAGTGTTCGTTTCTTTCTTTTTGGCCAAA 1439
consensus_9545#1      TGCTAAGATAGTGTGCCTTACGGTTGGATTCAAGTGTTCGTTTCTTTCTTTTTGGCCAAA 297
                      ************************************************************

consensus_9545#0      TTGATCAGCTAAATTGAATCTTAATTTGTACCATACCGAAAGGATTCATCTTAAACTTTC 1499
consensus_9545#1      TTGATCAGCTAAATTGAATCTTAATTTGTACCATACCGAAAGGATTCATCTTAAACTTTC 357
                      ************************************************************

consensus_9545#0      AGTCAATATATACATGTAAAATATACATATTTGGCAAGCAGAGTAGCATGCAGTCCTTTT 1559
consensus_9545#1      AGTCAATATATACATGTAAAATATACATATTTGGCAAGCAGAGTAGCATGCAGTCCTTTT 417
                      ************************************************************

consensus_9545#0      TATAAAAAAAAAAAAAAAAA 1579
consensus_9545#1      TATAAAAAAAAAAAAAAAA- 436
                      *******************