|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9550#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1267 fasta sequence
[CCGGAGAGCTCGGAGAAGGGCCCGACGAAGCGCAGGTGGGGATCACCTCGCCGGCGATGGCGCGGAGGAGGGGAAGCGCGGCGGCGGCCGCGGCCTCGCCGGCCGTGGTCGGGGCGGTCTCCGTGTTGGCCCTTGTGTACTACTCCACGGTGTTCGTCTTCCTGGACCACTGGCTCGGCCTCGGCAACGCGGCCGGCGCCGCCCACGCCGCCGCCTTCTCCCTCGTCGTCGCCGCGTGCTTCTTCTCCTTCTTCTGCGCCGCGGCCGCTGACCCGGGCTCCGTGCCCGCCTCCTTCGCCCCCGACGCCGAGGACCCGCAGCGGCAGGGATTAAAATCGAGGTATTGCGATAAATGCTGCATGTACAAACCTTCTCGAACTCACCATTGCAAGGTGTGCAAAAGGTGTGTTCTTAAAATGGACCATCACTGTGTCTGGATTAACAACTGCGTGGGCTATGCAAACTACAAATCATTTATCATCTGTGTTCTAAATGCAACCATCGGGTCTCTTTACTCATTTGTGGTATTTCTATTTGATCTCTTCCAGACAGAACATGAATACGATGTTCCTTATGTGAAGGTCATACATGTCTTGGTCGGTGTTCTTTTGTTCTTCTTAAGCTTGACAATAGGTTCTCTGTTATGCTGGCACATATATCTCTTATGTCATAACATGACAACAATAGAGTACCGAGAGGCAACTAGAGCGAAATGGCTTGCACAGAAGAGTGGACA-GAAGTATCGGCACCGCTTTGATCTTGGCACACGAAAGAATATTCAAATGATCATGGGCCCAAACATCCTGTGCTGGCTTTGCCCTACTGCAACGGGGCATCTCAAGGATGGCACTGAGTTCCAGATCACAAACAACTGATCGGATCAACAAGGAAGCAATTGCTGCACACGTACATACTTCATACATACATTGTAGATTTGCGAGTTTATTTGGCGACCAAAGTTCTTGGCCGTTCCATTTGCTTGTTGCAGTAGAGAGCTCCACATTTGTCACCAGAATCTTTGTATGACAGCATG-TGAAATGTTCCATTTCCCTCCTAATCTCCATGTATTCTCTTGCTTCAATTTATTTGTGTGCAGAGCTGTA-GATA-GATCAAGTGATTTGAGTTTTGAGCATTGTGTACTGACATATTGAACGGCAAAACTATCAATTTGACCAGAATTTTCATGTCAATTTCGCTTATTCGGGGAATAAACGAAACGACATATTTGCAAACGAAATACAATTTGTGAATAAAATTTTTATATATG]
[+] EMBL AK100156 [CCGGAGAGCTCGGAGAAGGGCCCGACGAAGCGCAGGTGGGGATCACCTCGCCGGCGATGGCGCGGAGGAGGGGAAGCGCGGCGGCGGCCGCGGCCTCGCCGGCCGTGGTCGGGGCGGTCTCCGTGTTGGCCCTTGTGTACTACTCCACGGTGTTCGTCTTCCTGGACCACTGGCTCGGCCTCGGCAACGCGGCCGGCGCCGCCCACGCCGCCGCCTTCTCCCTCGTCGTCGCCGCGTGCTTCTTCTCCTTCTTCTGCGCCGCGGCCGCTGACCCGGGCTCCGTGCCCGCCTCCTTCGCCCCCGACGCCGAGGACCCGCAGCGGCAGGGATTAAAATCGAGGTATTGCGATAAATGCTGCATGTACAAACCTTCTCGAACTCACCATTGCAAGGTGTGCAAAAGGTGTGTTCTTAAAATGGACCATCACTGTGTCTGGATTAACAACTGCGTGGGCTATGCAAACTACAAATCATTTATCATCTGTGTTCTAAATGCAACCATCGGGTCTCTTTACTCATTTGTGGTATTTCTATTTGATCTCTTCCGGACAGAACATGAATACGATGTTCCTTATGTGAAGGTCATACATGTCTTGGTCGGTGTTCTTTTGTTCTTCTTAAGCTTGACAATAGGTTCTCTGTTATGCTGGCACATATATCTCTTATGTCATAACATGACAACAATAGAGTACCGAGAGGCAACTAGAGCGAAATGGCTTGCACAGAAGAGTGGACA GAAGTATCGGCACCGCTTTGATCTTGGCACACGAAAGAATATTCAAATGATCATGGGCCCAAACATCCTGTGCTGGCTTTGCCCTACTGCAACGGGGCATCTCAAGGATGGCACTGAGTTCCAGATCACAAACAACTGATCGGATCAACAAGGAAGCAATTGCTGCACACGTACATACTTCATACATACATTGTAGATTTGCGAGTTTATTTGGCGACCAAAGTTCTTGGCCGTTCCATTTGCTTGTTGCAGTAGAGAGCTCCACATTTGTCACCAGAATCTTTGTATGACAGCATG TGAAATGTTCCATTTCCCTCCTAATCTCCATGTATTCTCTTGCTTCAATTTATTTGTGTGCAGAGCTGTA GATA GATCAAGTGATTTGAGTTTTGAGCATTGTGTACTGACATATTGAACGGCAAAACTATCAATTTGACCAGAATTTTCATGTCAATTTCGCTTATTCGGGGAATAAACGAAACGACATATTTGCAAACGAAATACAATTTGTGAATAAAATTTTTATATATG]
[+] EMBL CA765345 [ ggGGCAGGGATTAAAATCGAGGTATTGCGATAAATGCTGCATGTACAAACCTTCTCGAACTCACCATTGCAAGGTGTGCAAAAGGTGTGTTCTTAAAATGGACCATCACTGTGTCTGGATTAACAACTGCGTGGGCTATGCAAACTACAAATCATTTATCATCTGTGTTCTAAATGCAACCATCGGGTCTCTTTACTCATTTGTGGTATTTCTATTTGATCTCTTCCAGACAGAACATGAATACGATGTTCCTTATGTGAAGGTCATACATGTCTTGGTCGGTGTTCTTTTGTTCTTCTTAAGCTTGACAATAGGTTCTCTGTTATGCTGGCACATATATCTCTTATGTCATAACATGACAACAATAGAGTACCGAGAGGCAACTAGAGCGAAATGGCTTGCACAGAAGAGTGGACA GAAGTATCGGCACCGCTTTGATCTTGGCACACGAAAGAATATTCAAATGATCATGGGCCCAAACATCCTGTGCTGGCTTTGCCCTACTGCAACGGGGCATCTCAAGGATGGCACTGAGTTCCAGATCACAAACAACTGATCGGATCAACAAGGAAGCAATTGCTGCACACGTACATACTTCATACATACATTGTAGATTTGCGAGTTTATTTGGCGACCAAAGNTCTTGGCCGTTCCATTTGCTTGNTGCAGTAGAGAGCTNCACATTTGTCACCAGAATCTTTGTATGACAGCATGNGGAAATGGTNCATTTCCCTCCTAATCTCCATGNAT ]
[+] EMBL CA998165 [ GCATGTACAAACCTTCTCGAACTCACCATTGCAAGGTGTGCAAAAGGTGTGTTCTTAAAATGGACCATCACTGTGTCTGGATTAACAACTGCGTGGGCTATGCAAACTACAAATCATTTATCATCTGTGTTCTAAATGCAACCATCGGGTCTC ]
[+] EMBL CF303580 [ ACCATCACTGTGTCTGGATTAACAACTGCGTGGGCTATGCAAACTACAAATCATTTATCATCTGTGTTCTAAATGCAACCATCGGGTCTCTTTACTCATTTGTGGTATTTCTATTTGATCTCTTCCAGACAGAACATGAATACGATGTTCCTTATGTGAAGGTCATACATGTCTTGGTCGGTGTTCTTTTGTTCTTCTTAAGCTTGACAATAGGTTCTCTGTTATGCTGGCACATATATCTCTTATGTCATAACATGACAACAATAGAGTACCGAGAGGCAACTAGAGCGAAATGGCTTGCACAGAAGAGTGGACA GAAGTATCGGCACCGCTTTGATCTTGGCACACGAAAGAATATTCAAATGATCATGGGCCCAAACATCCTGTGCTGGCTTTGCCCTACTGCAACGGGGCATCTCAAGGATGGCACTGAGTTCCAGATCACAAACAACTGATCGGATCAACAAGGAAGCAATTGCTGCACACGTACATACTTCATACATACATTGTAGATTTGCGAGTTTATTTGGCGACCAAAGTTCTTGGCCGTTCCATTTGCTTGTTGCAGTAGAGAGCTCCACATTTGTCACCAGAATCTTTGTATGAC ]
[+] EMBL C72564 [ AAGAGTGGACAGGAAGTATCGGCACCGCTTTGATCTTGGCACACGAAAGAATATTCAAATGATCATGGGCNCAAACATCCTGTGCTGGCTTTGCCCTACTGCAACGGGGCATCTCAAGGATGGCACTGAGTTCCAGATCACAAACAACTGATCGGATCAACAAGGAAGCAATTGCTGCACACGTACATACTTCATACATACATTGTAGATTTGCGAGTTTATTTGGCGACCAAAGTTCTTGGCCGTTCCATTTGCTTGTTGCAGTAGAGAGCTCCACATTTGTCACCAGAATCTTTGTATGACAGCATG TGAAATGTTCCATTTCCCTCCTAATCTCCATGTATTCTCTTGCTTCAATTTATTTGTGTGCAGAGCTGTANGATAGGATCAAGTGATTTGAGTTTTGAGCATTGTGTACTGACANATTTGACGGCAAAA ]
consensusID : consensus_9550#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 480 fasta sequence
[AGAGTGGACAGAAGTATCGGCACCGCTTTGATCTTGGCACACGAAAGAATATTCAAATGATCATGGGCCCAAACATCCTGTGCTGGCTTTGCCCTACTGCAACGGGGCATCTCAAGGATGGCACTGAGTTCCAGATCACAAACAACTGATCGGATCAACAAGGAAGCAATTGCTGCACACGTACATACTTCATACATACATTGTAGATTTGCGAGTTTATTTGGCGACCAAAGTTCTTGGCCGTTCCATTTGCTTGTTGCAGTAGAGAGCTCCACATTTGTCACCAGAATCTTTGTATGACAGCATGTGAAATGTTCCATTTCCCTCCTAATCTCCATGTATTCTCTTGCTTCAATTTATTTGTGTGCAGAGCTGTAGATAGATCAAGTGATTTGAGTTTTGAGCATTGTGTACTGACATATTGAACGGCAAAACTATCAATTTGACCAGAATTTTCATGTCAAAAAAAAAAAAAAAAAA]
[+] EMBL AU094009 [AGAGTGGACAGAAGTATCGGCACCGCTTTGATCTTGGCACACGAAAGAATATTCAAATGATCATGGGCCCAAACATCCTGTGCTGGCTTTGCCCTACTGCAACGGGGCATCTCAAGGATGGCACTGAGTTCCAGATCACAAACAACTGATCGGATCAACAAGGAAGCAATTGCTGCACACGTACATACTTCATACATACATTGTAGATTTGCGAGTTTATTTGGCGACCAAAGTTCTTGGCCGTTCCATTTGCTTGTTGCAGTAGAGAGCTCCACATTTGTCACCAGAATCTTTGTATGACAGCATGTGAAATGTTCCATTTCCCTCCTAATCTCCATGTATTCTCTTGCTTCAATTTATTTGTGTGCAGAGCTGTAGATAGATCAAGTGATTTGAGTTTTGAGCATTGTGTACTGACATATTGAACGGCAAAACTATCAATTTGACCAGAATTTTCATGTCAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9550#0 CCGGAGAGCTCGGAGAAGGGCCCGACGAAGCGCAGGTGGGGATCACCTCGCCGGCGATGG 60
consensus_9550#1 ------------------------------------------------------------
consensus_9550#0 CGCGGAGGAGGGGAAGCGCGGCGGCGGCCGCGGCCTCGCCGGCCGTGGTCGGGGCGGTCT 120
consensus_9550#1 ------------------------------------------------------------
consensus_9550#0 CCGTGTTGGCCCTTGTGTACTACTCCACGGTGTTCGTCTTCCTGGACCACTGGCTCGGCC 180
consensus_9550#1 ------------------------------------------------------------
consensus_9550#0 TCGGCAACGCGGCCGGCGCCGCCCACGCCGCCGCCTTCTCCCTCGTCGTCGCCGCGTGCT 240
consensus_9550#1 ------------------------------------------------------------
consensus_9550#0 TCTTCTCCTTCTTCTGCGCCGCGGCCGCTGACCCGGGCTCCGTGCCCGCCTCCTTCGCCC 300
consensus_9550#1 ------------------------------------------------------------
consensus_9550#0 CCGACGCCGAGGACCCGCAGCGGCAGGGATTAAAATCGAGGTATTGCGATAAATGCTGCA 360
consensus_9550#1 ------------------------------------------------------------
consensus_9550#0 TGTACAAACCTTCTCGAACTCACCATTGCAAGGTGTGCAAAAGGTGTGTTCTTAAAATGG 420
consensus_9550#1 ------------------------------------------------------------
consensus_9550#0 ACCATCACTGTGTCTGGATTAACAACTGCGTGGGCTATGCAAACTACAAATCATTTATCA 480
consensus_9550#1 ------------------------------------------------------------
consensus_9550#0 TCTGTGTTCTAAATGCAACCATCGGGTCTCTTTACTCATTTGTGGTATTTCTATTTGATC 540
consensus_9550#1 ------------------------------------------------------------
consensus_9550#0 TCTTCCAGACAGAACATGAATACGATGTTCCTTATGTGAAGGTCATACATGTCTTGGTCG 600
consensus_9550#1 ------------------------------------------------------------
consensus_9550#0 GTGTTCTTTTGTTCTTCTTAAGCTTGACAATAGGTTCTCTGTTATGCTGGCACATATATC 660
consensus_9550#1 ------------------------------------------------------------
consensus_9550#0 TCTTATGTCATAACATGACAACAATAGAGTACCGAGAGGCAACTAGAGCGAAATGGCTTG 720
consensus_9550#1 ------------------------------------------------------------
consensus_9550#0 CACAGAAGAGTGGACAGAAGTATCGGCACCGCTTTGATCTTGGCACACGAAAGAATATTC 780
consensus_9550#1 ------AGAGTGGACAGAAGTATCGGCACCGCTTTGATCTTGGCACACGAAAGAATATTC 54
******************************************************
consensus_9550#0 AAATGATCATGGGCCCAAACATCCTGTGCTGGCTTTGCCCTACTGCAACGGGGCATCTCA 840
consensus_9550#1 AAATGATCATGGGCCCAAACATCCTGTGCTGGCTTTGCCCTACTGCAACGGGGCATCTCA 114
************************************************************
consensus_9550#0 AGGATGGCACTGAGTTCCAGATCACAAACAACTGATCGGATCAACAAGGAAGCAATTGCT 900
consensus_9550#1 AGGATGGCACTGAGTTCCAGATCACAAACAACTGATCGGATCAACAAGGAAGCAATTGCT 174
************************************************************
consensus_9550#0 GCACACGTACATACTTCATACATACATTGTAGATTTGCGAGTTTATTTGGCGACCAAAGT 960
consensus_9550#1 GCACACGTACATACTTCATACATACATTGTAGATTTGCGAGTTTATTTGGCGACCAAAGT 234
************************************************************
consensus_9550#0 TCTTGGCCGTTCCATTTGCTTGTTGCAGTAGAGAGCTCCACATTTGTCACCAGAATCTTT 1020
consensus_9550#1 TCTTGGCCGTTCCATTTGCTTGTTGCAGTAGAGAGCTCCACATTTGTCACCAGAATCTTT 294
************************************************************
consensus_9550#0 GTATGACAGCATGTGAAATGTTCCATTTCCCTCCTAATCTCCATGTATTCTCTTGCTTCA 1080
consensus_9550#1 GTATGACAGCATGTGAAATGTTCCATTTCCCTCCTAATCTCCATGTATTCTCTTGCTTCA 354
************************************************************
consensus_9550#0 ATTTATTTGTGTGCAGAGCTGTAGATAGATCAAGTGATTTGAGTTTTGAGCATTGTGTAC 1140
consensus_9550#1 ATTTATTTGTGTGCAGAGCTGTAGATAGATCAAGTGATTTGAGTTTTGAGCATTGTGTAC 414
************************************************************
consensus_9550#0 TGACATATTGAACGGCAAAACTATCAATTTGACCAGAATTTTCATGTCAATTTCGCTTAT 1200
consensus_9550#1 TGACATATTGAACGGCAAAACTATCAATTTGACCAGAATTTTCATGTCAAA--------- 465
**************************************************
consensus_9550#0 TCGGGGAATAAACGAAACGACATATTTGCAAACGAAATACAATTTGTGAATAAAATTTTT 1260
consensus_9550#1 --AAAAAAAAAAAAAAA------------------------------------------- 480
** *** ***
consensus_9550#0 ATATATG 1267
consensus_9550#1 -------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||