These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9553#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1697 fasta sequence [GCCTCAGGAAAGGAAGGGGGCGAGTCCGGCCGCCGTCGCCATGTCCAAGCCACAGCAGCAGTCGCCCCCTTCCACCACCACCACCTCACCTCCTCCACCACCGCCCTCCACTCCGCCCCCCGCCTCCTCCTCCCGCTCCCTCCTCTCCGCGCTGCGCCGCTCCCCGGTCACCACCCTCGTCGCCGCCTTCTTCCTCCTCGCCCTCTTCATGTACGGCGAGGACGTCCGCACCCTCGCCGAGCTCTCCATCGACGACTACCTCTACCCCGACGCCGATTTCTACAACGTCTCCGCCCTTCCCCCTCTCCTCCTCCCCCCGCCCACCTGCGACCTCTCCCGCGGCCGATGGGTATTCGACAACACCTCCCTCCCGGCCTACAGGGAGAAGGAATGCACCTTCCTCACCAAGCAGGTCTCCTGCCTCGCCAATGGCCGCCCCGACGACCTATGGCAGTACTGGCGCTGGCAACCCAACAACTGCTCGCTCCCCACGTTCGACGCGCGGCGGTTCATGGAGAAGATGCGGGGGAAGAGGATGATGTTCGTGGGGGACTCGCTGAATCGGAACCAGTGGGAGTCGCTGGTGTGCCTGGTGCAGCCCATCCTATCCAAGGGCAGGAAGAAGATCGTCAAGCGCGGTTCCTTCAACATCTTCTACGCCAAGGAGTATCGCGCCACCCTCGAGTTCTACTGGGCTCCATTCCTCGTCGAGTCCAACTCCGACAACCCCAATTTCCACCACATCGACCAGCGCATCATCAGCCCTGAGCGGATCGAGAGCCATGCCAACAACTGGAAGGACGTTGATTACCTCATCTTCAACACCTACATCTGGTGGATGAACAACGAAGACATCAAAGTCAGGAGGCCAAATTCAACTTCTT-GGTCAGATCACGACGAGGTGCCAAGGATCGAGACCTA-TGGCCGTGTGTTC-AAGAC-TTGGTCGA-CCTGGCTGGAACAGAATGTTGATCCTGCCAGGACTTCGGTGTTCTTCATGACAATTTCTCCTCTTCACAACAGCCCAGCACAATGGGGGAACCCGAACGGGATCAAATGCGTAAAGGAGACACTTCCAGTCCTCAACTACACCAAGCCACTGGATCTCAACCATGACATGCGGATGTACGACCTGGTAGCAAAAGTTGCTAAAAACATGAA-GAATGTTCCAGTGTCGTTGATCGACATCACAAGGAT-GTCAGATTACAGGAAGGATGCCCACACATCATTGTA-TTCCATCCGTCAGGGTAAACTGTTGACACCGGAGCAGAAGGCTGACCCACAGAAGTACGCTGACTGCATCCATTGGTGCCTTCCTGGGGTACCAGACGTCTGGAACCAGATACTCTACACCAGGATCCTCTCCAAATCCTCCCCTCCATCCACACATCCCTCTCTCCCTCCACAATGACAAGCAGGGAGCATGATTTTTTTTTTTGCCCCATCGTATACTATATAGGAAATGTATCATTACTATTCAA-TTTTTTTGGTAGTTTGGTGAAGAAAATCAAGCTAGAGAGAGAAAGGATGGAGTGGGCTGTTTACTGGTGGCATGTAAAATCGTTCAATTGAATTGTAAATTAGTTTTGAGCTAACCAATTGAGCAAACAGCACTGGTGNAGACACTCGGGACTNTGGACTGAGAAATCAGCTGGCAATACATATATACAGGGGGGCACAGTGATTAATCTGAAAAAAAA] [+] EMBL AK067342 [GCCTCAGGAAAGGAAGGGGGCGAGTCCGGCCGCCGTCGCCATGTCCAAGCCACAGCAGCAGTCGCCCCCTTCCACCACCACCACCTCACCTCCTCCACCACCGCCCTCCACTCCGCCCCCCGCCTCCTCCTCCCGCTCCCTCCTCTCCGCGCTGCGCCGCTCCCCGGTCACCACCCTCGTCGCCGCCTTCTTCCTCCTCGCCCTCTTCATGTACGGCGAGGACGTCCGCACCCTCGCCGAGCTCTCCATCGACGACTACCTCTACCCCGACGCCGATTTCTACAACGTCTCCGCCCTTCCCCCTCTCCTCCTCCCCCCGCCCACCTGCGACCTCTCCCGCGGCCGATGGGTATTCGACAACACCTCCCTCCCGGCCTACAGGGAGAAGGAATGCACCTTCCTCACCAAGCAGGTCTCCTGCCTCGCCAATGGCCGCCCCGACGACCTATGGCAGTACTGGCGCTGGCAACCCAACAACTGCTCGCTCCCCACGTTCGACGCGCGGCGGTTCATGGAGAAGATGCGGGGGAAGAGGATGATGTTCGTGGGGGACTCGCTGAATCGGAACCAGTGGGAGTCGCTGGTGTGCCTGGTGCAGCCCATCCTATCCAAGGGCAGGAAGAAGATCGTCAAGCGCGGTTCCTTCAACATCTTCTACGCCAAGGAGTATCGCGCCACCCTCGAGTTCTACTGGGCTCCATTCCTCGTCGAGTCCAACTCCGACAACCCCAATTTCCACCACATCGACCAGCGCATCATCAGCCCTGAGCGGATCGAGAGCCATGCCAACAACTGGAAGGACGTTGATTACCTCATCTTCAACACCTACATCTGGTGGATGAACAACGAAGACATCAAAGTCAGGAGGCCAAATTCAACTTCTT GGTCAGATCACGACGAGGTGCCAAGGATCGAGACCTA TGGCCGTGTGTTC AAGAC TTGGTCGA CCTGGCTGGAACAGAATGTTGATCCTGCCAGGACTTCGGTGTTCTTCATGACAATTTCTCCTCTTCACAACAGCCCAGCACAATGGGGGAACCCGAACGGGATCAAATGCGTAAAGGAGACACTTCCAGTCCTCAACTACACCAAGCCACTGGATCTCAACCATGACATGCGGATGTACGACCTGGTAGCAAAAGTTGCTAAAAACATGAA GAATGTTCCAGTGTCGTTGATCGACATCACAAGGAT GTCAGATTACAGGAAGGATGCCCACACATCATTGTA TTCCATCCGTCAGGGTAAACTGTTGACACCGGAGCAGAAGGCTGACCCACAGAAGTACGCTGACTGCATCCATTGGTGCCTTCCTGGGGTACCAGACGTCTGGAACCAGATACTCTACACCAGGATCCTCTCCAAATCCTCCCCTCCATCCACACATCCCTCTCTCCCTCCACAATGACAAGCAGGGAGCATGATTTTTTTTTTTGCCCCATCGTATACTATATAGGAAATGTATCATTACTATTCAA TTTTTTTGGTAGTTTGGTGAAGAAAATCAAGCTAGAGAGAGAAAGGATGGAGTGGGCTGTTTACTGGTGGCATGTAAAATCGTTCAATTGAATTGTAAATTAGTTTTGAGCTAACCAATTGAGCAAACA ] [+] EMBL OSS14928A [ GACTCGCTGAATCGGAACCAGTGGGAGTCGCTGGTGTGCCTGGTGCAGCCCATCCTATCCAAGGGCAGGAAGAAGATCGTCAAGCGCGGTTCCTTCAACATCTTCTACGCCAAGGAGTATCGCGCCACCCTCGAGTTCTACTGGGCTCCATTCCTCGTCGAGTCCAACTTCGACAACCCCAATTTCCACCACATCGACCAGCGCATCATCAGCCCTGAGCGGATCGAGAGCCATGCCAACAACTGGAAGGACGTTGATTACCTCATCTTCAACACCTACATCTGGTGGATGAACAACGAAGACATCAAAGTCAGGAGGGCAAATTCAACTTCTTGGGTCAGATCACGGCGAGGTGCCAAGGATCGAGACCTATTGGCCGTGTGTTCAAAGACTTTGGTCGANCTTGGTTGGAACAAAATTTTGATCCTGCCAGGNCTTCGGTGTTCT ] [+] EMBL OSC175 [ ACAACGAAGACATCAAAGTCAGGAGGCCAAATTCAACTTCTT GGTCAGATCACGACGAGGTGCCAAGGATCGAGACCTA TGGCCGTGTGTTC AAGAC TTGGTCGA CCTGGCTGGAACAGAATGTTGATCCTGCCAGGACTTCGGTGTTCTTCATGACAATTTCTCCTCTTCACAACAGCCCAGCACAATGGGGGAACCCGAACGGGATCAAATGCGTAAAGGAGACACTTCCAGTCCTCAACTACACCAAGCCACTGGATCTCAACCATGACATGCGGATGTACGACCTGGTAGCAAAAGTTGCTAAAAACATGAAGGAATGTTCCAGTGTCGTTGATCG CATCACAAGGATGGTCAGATTACAGGAAGGATGCCCACACATCATTGTATTTCCATCCGTCAGGGTAAACTTTTGACACCGGAGCAGAAGGCTtgncca ] [+] EMBL CB096290 [ aggggGAAGACATCAAAGTCAGGAGGCCAAATTCAACTTCTT GGTCAGATCACGACGAGGTGCCAAGGATCGAGACCTA TGGCCGTGTGTTC AAGAC TTGGTCGA CCTGGCTGGAACAGAATGTTGATCCTGCCAGGACTTCGGTGTTCTTCATGACAATTCCTCCTCTTCACAACAGCCCAGCACAATGGGGGAACCCGAACGGGATCAAATGCGTAAAGGAGACACTTCCAGTCCTCAACTACACCAAGCCACTGGATCTCAACCATGACATGCGGATGTACGACCTGGTAGCAAAAGTTGCTAAAAACATGAA GAATGTTCCAGTGTCGTTGATCGACATCACAAGGAT GTCAGATTACAGGAAGGATGCCCACACATCATTGTA TTCCATCCGTCAGGGTAAACTGTTGACACCGGAGCAGAAGGCTGACCCACAGAAGTACGCTGACTGCATCCATTGGTGCCTTCCTGGGGTACCAGACGTCTGGAACCAGATACTCTACACCAGGATCCTCTNCAAATCCTTCCCTTCATTCACACATNCCTCTCTTCCTTCACAATGACAAGCAGGGAGCATGA TTTTTTTTG CCCATCGTATACTATATAGGNAATGNATCATTACTATTCAATTTTTTTTGGTAGNTTGGTGAA NAAATCAAGCTAGANAGAG AGGATGGAGTGGGCTGNTTACTGATGGCATGCAAAATCGNTCAANTGAATTGGAAATTAGTTTTGAGCTAACC ANTGAGC AACAGCACTGGTGNAGACACTCGGGACTNTGGACTGA ] [+] EMBL AU094360 [ TTTTTGCCCCATCGTATACTATATAGGAAATGTATCATTACTATTCAA TTTTTTTGGTAGTTTGGTGAAGAAAATCAAGCTAGAGAGAGAAAGGATGGAGTGGGCTGTTTACTGGTGGCATGTAAAATCGTTCAATTGAATTGTAAATTAGTTTTGAGCTAACCAATTGAGCAAACAGCACTGTTGTAGACACTCGGTACTCTGGACTGTGAAATCAGCTGGCAATACATATATACAGGGGGGCACAGTGATTAATCTGAAAAAAAA] consensusID : consensus_9553#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence [CCAGCACAATGGGGGAACCCGAACGGGATCAAATGCGTAAAGGAGACACTTCCAGTCCTCAACTACACCAAGCCACTGGATCTCAACCATGACATGCGGATGTACGACCTGGTAGCAAAAGTTGCTAAAAACATGAAGAATGTTCCAGTGTCGTTGATCGACATCACAAGGATGTCAGATTACAGGAAGGATGCCCACACATCATTGTATTCCATCCGTCAGGGTAAACTGTTGACACCGGAGCAGAAGGCTGACCCACAGAAGTACGCTGACTGCATCCATTGGTGCCTTCCTGGGGTACCAGACGTTTGGAACCAGATACTTTACACCAGGATCCTCTCCAAATCCTCCCCTCCATCCACACATCCCTTTTTCCCTCCACAATGACAAGCAGGGAGCATGATTTTTTTTTGCCCCATCGTATACTATATAGGAAATGTATCATTACTATTCAATTTTTTTGGTAGTTTGGTGAAGAAAATCAAGCTAGAGAGAGAAAGGATGGAGTGGGCTGTTTACTGGTGGCATGTAAAATCGTTCAATTGAATTGTAAATTAGTTTTGAGCTAACCAATTGAGCAAACAGCACTGTTGTAGACACTCGGTACTTTGGACTGTGAAATCAGCTGGCAATACATATATACAGGGGGGCACAGTGATTAATGGGAGATCAATTT] [-] EMBL CB669834 [CCAGCACAATGGGGGAACCCGAACGGGATCAAATGCGTAAAGGAGACACTTCCAGTCCTCAACTACACCAAGCCACTGGATCTCAACCATGACATGCGGATGTACGACCTGGTAGCAAAAGTTGCTAAAAACATGAAGAATGTTCCAGTGTCGTTGATCGACATCACAAGGATGTCAGATTACAGGAAGGATGCCCACACATCATTGTATTCCATCCGTCAGGGTAAACTGTTGACACCGGAGCAGAAGGCTGACCCACAGAAGTACGCTGACTGCATCCATTGGTGCCTTCCTGGGGTACCAGACGTTTGGAACCAGATACTTTACACCAGGATCCTCTCCAAATCCTCCCCTCCATCCACACATCCCTTTTTCCCTCCACAATGACAAGCAGGGAGCATGATTTTTTTTTGCCCCATCGTATACTATATAGGAAATGTATCATTACTATTCAATTTTTTTGGTAGTTTGGTGAAGAAAATCAAGCTAGAGAGAGAAAGGATGGAGTGGGCTGTTTACTGGTGGCATGTAAAATCGTTCAATTGAATTGTAAATTAGTTTTGAGCTAACCAATTGAGCAAACAGCACTGTTGTAGACACTCGGTACTTTGGACTGTGAAATCAGCTGGCAATACATATATACAGGGGGGCACAGTGATTAATGGGAGATCAATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9553#0 GCCTCAGGAAAGGAAGGGGGCGAGTCCGGCCGCCGTCGCCATGTCCAAGCCACAGCAGCA 60 consensus_9553#1 ------------------------------------------------------------ consensus_9553#0 GTCGCCCCCTTCCACCACCACCACCTCACCTCCTCCACCACCGCCCTCCACTCCGCCCCC 120 consensus_9553#1 ------------------------------------------------------------ consensus_9553#0 CGCCTCCTCCTCCCGCTCCCTCCTCTCCGCGCTGCGCCGCTCCCCGGTCACCACCCTCGT 180 consensus_9553#1 ------------------------------------------------------------ consensus_9553#0 CGCCGCCTTCTTCCTCCTCGCCCTCTTCATGTACGGCGAGGACGTCCGCACCCTCGCCGA 240 consensus_9553#1 ------------------------------------------------------------ consensus_9553#0 GCTCTCCATCGACGACTACCTCTACCCCGACGCCGATTTCTACAACGTCTCCGCCCTTCC 300 consensus_9553#1 ------------------------------------------------------------ consensus_9553#0 CCCTCTCCTCCTCCCCCCGCCCACCTGCGACCTCTCCCGCGGCCGATGGGTATTCGACAA 360 consensus_9553#1 ------------------------------------------------------------ consensus_9553#0 CACCTCCCTCCCGGCCTACAGGGAGAAGGAATGCACCTTCCTCACCAAGCAGGTCTCCTG 420 consensus_9553#1 ------------------------------------------------------------ consensus_9553#0 CCTCGCCAATGGCCGCCCCGACGACCTATGGCAGTACTGGCGCTGGCAACCCAACAACTG 480 consensus_9553#1 ------------------------------------------------------------ consensus_9553#0 CTCGCTCCCCACGTTCGACGCGCGGCGGTTCATGGAGAAGATGCGGGGGAAGAGGATGAT 540 consensus_9553#1 ------------------------------------------------------------ consensus_9553#0 GTTCGTGGGGGACTCGCTGAATCGGAACCAGTGGGAGTCGCTGGTGTGCCTGGTGCAGCC 600 consensus_9553#1 ------------------------------------------------------------ consensus_9553#0 CATCCTATCCAAGGGCAGGAAGAAGATCGTCAAGCGCGGTTCCTTCAACATCTTCTACGC 660 consensus_9553#1 ------------------------------------------------------------ consensus_9553#0 CAAGGAGTATCGCGCCACCCTCGAGTTCTACTGGGCTCCATTCCTCGTCGAGTCCAACTC 720 consensus_9553#1 ------------------------------------------------------------ consensus_9553#0 CGACAACCCCAATTTCCACCACATCGACCAGCGCATCATCAGCCCTGAGCGGATCGAGAG 780 consensus_9553#1 ------------------------------------------------------------ consensus_9553#0 CCATGCCAACAACTGGAAGGACGTTGATTACCTCATCTTCAACACCTACATCTGGTGGAT 840 consensus_9553#1 ------------------------------------------------------------ consensus_9553#0 GAACAACGAAGACATCAAAGTCAGGAGGCCAAATTCAACTTCTTGGTCAGATCACGACGA 900 consensus_9553#1 ------------------------------------------------------------ consensus_9553#0 GGTGCCAAGGATCGAGACCTATGGCCGTGTGTTCAAGACTTGGTCGACCTGGCTGGAACA 960 consensus_9553#1 ------------------------------------------------------------ consensus_9553#0 GAATGTTGATCCTGCCAGGACTTCGGTGTTCTTCATGACAATTTCTCCTCTTCACAACAG 1020 consensus_9553#1 ------------------------------------------------------------ consensus_9553#0 CCCAGCACAATGGGGGAACCCGAACGGGATCAAATGCGTAAAGGAGACACTTCCAGTCCT 1080 consensus_9553#1 -CCAGCACAATGGGGGAACCCGAACGGGATCAAATGCGTAAAGGAGACACTTCCAGTCCT 59 *********************************************************** consensus_9553#0 CAACTACACCAAGCCACTGGATCTCAACCATGACATGCGGATGTACGACCTGGTAGCAAA 1140 consensus_9553#1 CAACTACACCAAGCCACTGGATCTCAACCATGACATGCGGATGTACGACCTGGTAGCAAA 119 ************************************************************ consensus_9553#0 AGTTGCTAAAAACATGAAGAATGTTCCAGTGTCGTTGATCGACATCACAAGGATGTCAGA 1200 consensus_9553#1 AGTTGCTAAAAACATGAAGAATGTTCCAGTGTCGTTGATCGACATCACAAGGATGTCAGA 179 ************************************************************ consensus_9553#0 TTACAGGAAGGATGCCCACACATCATTGTATTCCATCCGTCAGGGTAAACTGTTGACACC 1260 consensus_9553#1 TTACAGGAAGGATGCCCACACATCATTGTATTCCATCCGTCAGGGTAAACTGTTGACACC 239 ************************************************************ consensus_9553#0 GGAGCAGAAGGCTGACCCACAGAAGTACGCTGACTGCATCCATTGGTGCCTTCCTGGGGT 1320 consensus_9553#1 GGAGCAGAAGGCTGACCCACAGAAGTACGCTGACTGCATCCATTGGTGCCTTCCTGGGGT 299 ************************************************************ consensus_9553#0 ACCAGACGTCTGGAACCAGATACTCTACACCAGGATCCTCTCCAAATCCTCCCCTCCATC 1380 consensus_9553#1 ACCAGACGTTTGGAACCAGATACTTTACACCAGGATCCTCTCCAAATCCTCCCCTCCATC 359 ********* ************** *********************************** consensus_9553#0 CACACATCCCTCTCTCCCTCCACAATGACAAGCAGGGAGCATGATTTTTTTTTTTGCCCC 1440 consensus_9553#1 CACACATCCCTTTTTCCCTCCACAATGACAAGCAGGGAGCATGATTTTTTTT--TGCCCC 417 *********** * ************************************** ****** consensus_9553#0 ATCGTATACTATATAGGAAATGTATCATTACTATTCAATTTTTTTGGTAGTTTGGTGAAG 1500 consensus_9553#1 ATCGTATACTATATAGGAAATGTATCATTACTATTCAATTTTTTTGGTAGTTTGGTGAAG 477 ************************************************************ consensus_9553#0 AAAATCAAGCTAGAGAGAGAAAGGATGGAGTGGGCTGTTTACTGGTGGCATGTAAAATCG 1560 consensus_9553#1 AAAATCAAGCTAGAGAGAGAAAGGATGGAGTGGGCTGTTTACTGGTGGCATGTAAAATCG 537 ************************************************************ consensus_9553#0 TTCAATTGAATTGTAAATTAGTTTTGAGCTAACCAATTGAGCAAACAGCACTGGTGNAGA 1620 consensus_9553#1 TTCAATTGAATTGTAAATTAGTTTTGAGCTAACCAATTGAGCAAACAGCACTGTTGTAGA 597 ***************************************************** ** *** consensus_9553#0 CACTCGGGACTNTGGACTGAGAAATCAGCTGGCAATACATATATACAGGGGGGCACAGTG 1680 consensus_9553#1 CACTCGGTACTTTGGACTGTGAAATCAGCTGGCAATACATATATACAGGGGGGCACAGTG 657 ******* *** ******* **************************************** consensus_9553#0 ATTAATCTGAAAAAAAA-- 1697 consensus_9553#1 ATTAATGGGAGATCAATTT 676 ****** ** * ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||