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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9553#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1697 fasta sequence
[GCCTCAGGAAAGGAAGGGGGCGAGTCCGGCCGCCGTCGCCATGTCCAAGCCACAGCAGCAGTCGCCCCCTTCCACCACCACCACCTCACCTCCTCCACCACCGCCCTCCACTCCGCCCCCCGCCTCCTCCTCCCGCTCCCTCCTCTCCGCGCTGCGCCGCTCCCCGGTCACCACCCTCGTCGCCGCCTTCTTCCTCCTCGCCCTCTTCATGTACGGCGAGGACGTCCGCACCCTCGCCGAGCTCTCCATCGACGACTACCTCTACCCCGACGCCGATTTCTACAACGTCTCCGCCCTTCCCCCTCTCCTCCTCCCCCCGCCCACCTGCGACCTCTCCCGCGGCCGATGGGTATTCGACAACACCTCCCTCCCGGCCTACAGGGAGAAGGAATGCACCTTCCTCACCAAGCAGGTCTCCTGCCTCGCCAATGGCCGCCCCGACGACCTATGGCAGTACTGGCGCTGGCAACCCAACAACTGCTCGCTCCCCACGTTCGACGCGCGGCGGTTCATGGAGAAGATGCGGGGGAAGAGGATGATGTTCGTGGGGGACTCGCTGAATCGGAACCAGTGGGAGTCGCTGGTGTGCCTGGTGCAGCCCATCCTATCCAAGGGCAGGAAGAAGATCGTCAAGCGCGGTTCCTTCAACATCTTCTACGCCAAGGAGTATCGCGCCACCCTCGAGTTCTACTGGGCTCCATTCCTCGTCGAGTCCAACTCCGACAACCCCAATTTCCACCACATCGACCAGCGCATCATCAGCCCTGAGCGGATCGAGAGCCATGCCAACAACTGGAAGGACGTTGATTACCTCATCTTCAACACCTACATCTGGTGGATGAACAACGAAGACATCAAAGTCAGGAGGCCAAATTCAACTTCTT-GGTCAGATCACGACGAGGTGCCAAGGATCGAGACCTA-TGGCCGTGTGTTC-AAGAC-TTGGTCGA-CCTGGCTGGAACAGAATGTTGATCCTGCCAGGACTTCGGTGTTCTTCATGACAATTTCTCCTCTTCACAACAGCCCAGCACAATGGGGGAACCCGAACGGGATCAAATGCGTAAAGGAGACACTTCCAGTCCTCAACTACACCAAGCCACTGGATCTCAACCATGACATGCGGATGTACGACCTGGTAGCAAAAGTTGCTAAAAACATGAA-GAATGTTCCAGTGTCGTTGATCGACATCACAAGGAT-GTCAGATTACAGGAAGGATGCCCACACATCATTGTA-TTCCATCCGTCAGGGTAAACTGTTGACACCGGAGCAGAAGGCTGACCCACAGAAGTACGCTGACTGCATCCATTGGTGCCTTCCTGGGGTACCAGACGTCTGGAACCAGATACTCTACACCAGGATCCTCTCCAAATCCTCCCCTCCATCCACACATCCCTCTCTCCCTCCACAATGACAAGCAGGGAGCATGATTTTTTTTTTTGCCCCATCGTATACTATATAGGAAATGTATCATTACTATTCAA-TTTTTTTGGTAGTTTGGTGAAGAAAATCAAGCTAGAGAGAGAAAGGATGGAGTGGGCTGTTTACTGGTGGCATGTAAAATCGTTCAATTGAATTGTAAATTAGTTTTGAGCTAACCAATTGAGCAAACAGCACTGGTGNAGACACTCGGGACTNTGGACTGAGAAATCAGCTGGCAATACATATATACAGGGGGGCACAGTGATTAATCTGAAAAAAAA]
[+] EMBL AK067342 [GCCTCAGGAAAGGAAGGGGGCGAGTCCGGCCGCCGTCGCCATGTCCAAGCCACAGCAGCAGTCGCCCCCTTCCACCACCACCACCTCACCTCCTCCACCACCGCCCTCCACTCCGCCCCCCGCCTCCTCCTCCCGCTCCCTCCTCTCCGCGCTGCGCCGCTCCCCGGTCACCACCCTCGTCGCCGCCTTCTTCCTCCTCGCCCTCTTCATGTACGGCGAGGACGTCCGCACCCTCGCCGAGCTCTCCATCGACGACTACCTCTACCCCGACGCCGATTTCTACAACGTCTCCGCCCTTCCCCCTCTCCTCCTCCCCCCGCCCACCTGCGACCTCTCCCGCGGCCGATGGGTATTCGACAACACCTCCCTCCCGGCCTACAGGGAGAAGGAATGCACCTTCCTCACCAAGCAGGTCTCCTGCCTCGCCAATGGCCGCCCCGACGACCTATGGCAGTACTGGCGCTGGCAACCCAACAACTGCTCGCTCCCCACGTTCGACGCGCGGCGGTTCATGGAGAAGATGCGGGGGAAGAGGATGATGTTCGTGGGGGACTCGCTGAATCGGAACCAGTGGGAGTCGCTGGTGTGCCTGGTGCAGCCCATCCTATCCAAGGGCAGGAAGAAGATCGTCAAGCGCGGTTCCTTCAACATCTTCTACGCCAAGGAGTATCGCGCCACCCTCGAGTTCTACTGGGCTCCATTCCTCGTCGAGTCCAACTCCGACAACCCCAATTTCCACCACATCGACCAGCGCATCATCAGCCCTGAGCGGATCGAGAGCCATGCCAACAACTGGAAGGACGTTGATTACCTCATCTTCAACACCTACATCTGGTGGATGAACAACGAAGACATCAAAGTCAGGAGGCCAAATTCAACTTCTT GGTCAGATCACGACGAGGTGCCAAGGATCGAGACCTA TGGCCGTGTGTTC AAGAC TTGGTCGA CCTGGCTGGAACAGAATGTTGATCCTGCCAGGACTTCGGTGTTCTTCATGACAATTTCTCCTCTTCACAACAGCCCAGCACAATGGGGGAACCCGAACGGGATCAAATGCGTAAAGGAGACACTTCCAGTCCTCAACTACACCAAGCCACTGGATCTCAACCATGACATGCGGATGTACGACCTGGTAGCAAAAGTTGCTAAAAACATGAA GAATGTTCCAGTGTCGTTGATCGACATCACAAGGAT GTCAGATTACAGGAAGGATGCCCACACATCATTGTA TTCCATCCGTCAGGGTAAACTGTTGACACCGGAGCAGAAGGCTGACCCACAGAAGTACGCTGACTGCATCCATTGGTGCCTTCCTGGGGTACCAGACGTCTGGAACCAGATACTCTACACCAGGATCCTCTCCAAATCCTCCCCTCCATCCACACATCCCTCTCTCCCTCCACAATGACAAGCAGGGAGCATGATTTTTTTTTTTGCCCCATCGTATACTATATAGGAAATGTATCATTACTATTCAA TTTTTTTGGTAGTTTGGTGAAGAAAATCAAGCTAGAGAGAGAAAGGATGGAGTGGGCTGTTTACTGGTGGCATGTAAAATCGTTCAATTGAATTGTAAATTAGTTTTGAGCTAACCAATTGAGCAAACA ]
[+] EMBL OSS14928A [ GACTCGCTGAATCGGAACCAGTGGGAGTCGCTGGTGTGCCTGGTGCAGCCCATCCTATCCAAGGGCAGGAAGAAGATCGTCAAGCGCGGTTCCTTCAACATCTTCTACGCCAAGGAGTATCGCGCCACCCTCGAGTTCTACTGGGCTCCATTCCTCGTCGAGTCCAACTTCGACAACCCCAATTTCCACCACATCGACCAGCGCATCATCAGCCCTGAGCGGATCGAGAGCCATGCCAACAACTGGAAGGACGTTGATTACCTCATCTTCAACACCTACATCTGGTGGATGAACAACGAAGACATCAAAGTCAGGAGGGCAAATTCAACTTCTTGGGTCAGATCACGGCGAGGTGCCAAGGATCGAGACCTATTGGCCGTGTGTTCAAAGACTTTGGTCGANCTTGGTTGGAACAAAATTTTGATCCTGCCAGGNCTTCGGTGTTCT ]
[+] EMBL OSC175 [ ACAACGAAGACATCAAAGTCAGGAGGCCAAATTCAACTTCTT GGTCAGATCACGACGAGGTGCCAAGGATCGAGACCTA TGGCCGTGTGTTC AAGAC TTGGTCGA CCTGGCTGGAACAGAATGTTGATCCTGCCAGGACTTCGGTGTTCTTCATGACAATTTCTCCTCTTCACAACAGCCCAGCACAATGGGGGAACCCGAACGGGATCAAATGCGTAAAGGAGACACTTCCAGTCCTCAACTACACCAAGCCACTGGATCTCAACCATGACATGCGGATGTACGACCTGGTAGCAAAAGTTGCTAAAAACATGAAGGAATGTTCCAGTGTCGTTGATCG CATCACAAGGATGGTCAGATTACAGGAAGGATGCCCACACATCATTGTATTTCCATCCGTCAGGGTAAACTTTTGACACCGGAGCAGAAGGCTtgncca ]
[+] EMBL CB096290 [ aggggGAAGACATCAAAGTCAGGAGGCCAAATTCAACTTCTT GGTCAGATCACGACGAGGTGCCAAGGATCGAGACCTA TGGCCGTGTGTTC AAGAC TTGGTCGA CCTGGCTGGAACAGAATGTTGATCCTGCCAGGACTTCGGTGTTCTTCATGACAATTCCTCCTCTTCACAACAGCCCAGCACAATGGGGGAACCCGAACGGGATCAAATGCGTAAAGGAGACACTTCCAGTCCTCAACTACACCAAGCCACTGGATCTCAACCATGACATGCGGATGTACGACCTGGTAGCAAAAGTTGCTAAAAACATGAA GAATGTTCCAGTGTCGTTGATCGACATCACAAGGAT GTCAGATTACAGGAAGGATGCCCACACATCATTGTA TTCCATCCGTCAGGGTAAACTGTTGACACCGGAGCAGAAGGCTGACCCACAGAAGTACGCTGACTGCATCCATTGGTGCCTTCCTGGGGTACCAGACGTCTGGAACCAGATACTCTACACCAGGATCCTCTNCAAATCCTTCCCTTCATTCACACATNCCTCTCTTCCTTCACAATGACAAGCAGGGAGCATGA TTTTTTTTG CCCATCGTATACTATATAGGNAATGNATCATTACTATTCAATTTTTTTTGGTAGNTTGGTGAA NAAATCAAGCTAGANAGAG AGGATGGAGTGGGCTGNTTACTGATGGCATGCAAAATCGNTCAANTGAATTGGAAATTAGTTTTGAGCTAACC ANTGAGC AACAGCACTGGTGNAGACACTCGGGACTNTGGACTGA ]
[+] EMBL AU094360 [ TTTTTGCCCCATCGTATACTATATAGGAAATGTATCATTACTATTCAA TTTTTTTGGTAGTTTGGTGAAGAAAATCAAGCTAGAGAGAGAAAGGATGGAGTGGGCTGTTTACTGGTGGCATGTAAAATCGTTCAATTGAATTGTAAATTAGTTTTGAGCTAACCAATTGAGCAAACAGCACTGTTGTAGACACTCGGTACTCTGGACTGTGAAATCAGCTGGCAATACATATATACAGGGGGGCACAGTGATTAATCTGAAAAAAAA]
consensusID : consensus_9553#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence
[CCAGCACAATGGGGGAACCCGAACGGGATCAAATGCGTAAAGGAGACACTTCCAGTCCTCAACTACACCAAGCCACTGGATCTCAACCATGACATGCGGATGTACGACCTGGTAGCAAAAGTTGCTAAAAACATGAAGAATGTTCCAGTGTCGTTGATCGACATCACAAGGATGTCAGATTACAGGAAGGATGCCCACACATCATTGTATTCCATCCGTCAGGGTAAACTGTTGACACCGGAGCAGAAGGCTGACCCACAGAAGTACGCTGACTGCATCCATTGGTGCCTTCCTGGGGTACCAGACGTTTGGAACCAGATACTTTACACCAGGATCCTCTCCAAATCCTCCCCTCCATCCACACATCCCTTTTTCCCTCCACAATGACAAGCAGGGAGCATGATTTTTTTTTGCCCCATCGTATACTATATAGGAAATGTATCATTACTATTCAATTTTTTTGGTAGTTTGGTGAAGAAAATCAAGCTAGAGAGAGAAAGGATGGAGTGGGCTGTTTACTGGTGGCATGTAAAATCGTTCAATTGAATTGTAAATTAGTTTTGAGCTAACCAATTGAGCAAACAGCACTGTTGTAGACACTCGGTACTTTGGACTGTGAAATCAGCTGGCAATACATATATACAGGGGGGCACAGTGATTAATGGGAGATCAATTT]
[-] EMBL CB669834 [CCAGCACAATGGGGGAACCCGAACGGGATCAAATGCGTAAAGGAGACACTTCCAGTCCTCAACTACACCAAGCCACTGGATCTCAACCATGACATGCGGATGTACGACCTGGTAGCAAAAGTTGCTAAAAACATGAAGAATGTTCCAGTGTCGTTGATCGACATCACAAGGATGTCAGATTACAGGAAGGATGCCCACACATCATTGTATTCCATCCGTCAGGGTAAACTGTTGACACCGGAGCAGAAGGCTGACCCACAGAAGTACGCTGACTGCATCCATTGGTGCCTTCCTGGGGTACCAGACGTTTGGAACCAGATACTTTACACCAGGATCCTCTCCAAATCCTCCCCTCCATCCACACATCCCTTTTTCCCTCCACAATGACAAGCAGGGAGCATGATTTTTTTTTGCCCCATCGTATACTATATAGGAAATGTATCATTACTATTCAATTTTTTTGGTAGTTTGGTGAAGAAAATCAAGCTAGAGAGAGAAAGGATGGAGTGGGCTGTTTACTGGTGGCATGTAAAATCGTTCAATTGAATTGTAAATTAGTTTTGAGCTAACCAATTGAGCAAACAGCACTGTTGTAGACACTCGGTACTTTGGACTGTGAAATCAGCTGGCAATACATATATACAGGGGGGCACAGTGATTAATGGGAGATCAATTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9553#0 GCCTCAGGAAAGGAAGGGGGCGAGTCCGGCCGCCGTCGCCATGTCCAAGCCACAGCAGCA 60
consensus_9553#1 ------------------------------------------------------------
consensus_9553#0 GTCGCCCCCTTCCACCACCACCACCTCACCTCCTCCACCACCGCCCTCCACTCCGCCCCC 120
consensus_9553#1 ------------------------------------------------------------
consensus_9553#0 CGCCTCCTCCTCCCGCTCCCTCCTCTCCGCGCTGCGCCGCTCCCCGGTCACCACCCTCGT 180
consensus_9553#1 ------------------------------------------------------------
consensus_9553#0 CGCCGCCTTCTTCCTCCTCGCCCTCTTCATGTACGGCGAGGACGTCCGCACCCTCGCCGA 240
consensus_9553#1 ------------------------------------------------------------
consensus_9553#0 GCTCTCCATCGACGACTACCTCTACCCCGACGCCGATTTCTACAACGTCTCCGCCCTTCC 300
consensus_9553#1 ------------------------------------------------------------
consensus_9553#0 CCCTCTCCTCCTCCCCCCGCCCACCTGCGACCTCTCCCGCGGCCGATGGGTATTCGACAA 360
consensus_9553#1 ------------------------------------------------------------
consensus_9553#0 CACCTCCCTCCCGGCCTACAGGGAGAAGGAATGCACCTTCCTCACCAAGCAGGTCTCCTG 420
consensus_9553#1 ------------------------------------------------------------
consensus_9553#0 CCTCGCCAATGGCCGCCCCGACGACCTATGGCAGTACTGGCGCTGGCAACCCAACAACTG 480
consensus_9553#1 ------------------------------------------------------------
consensus_9553#0 CTCGCTCCCCACGTTCGACGCGCGGCGGTTCATGGAGAAGATGCGGGGGAAGAGGATGAT 540
consensus_9553#1 ------------------------------------------------------------
consensus_9553#0 GTTCGTGGGGGACTCGCTGAATCGGAACCAGTGGGAGTCGCTGGTGTGCCTGGTGCAGCC 600
consensus_9553#1 ------------------------------------------------------------
consensus_9553#0 CATCCTATCCAAGGGCAGGAAGAAGATCGTCAAGCGCGGTTCCTTCAACATCTTCTACGC 660
consensus_9553#1 ------------------------------------------------------------
consensus_9553#0 CAAGGAGTATCGCGCCACCCTCGAGTTCTACTGGGCTCCATTCCTCGTCGAGTCCAACTC 720
consensus_9553#1 ------------------------------------------------------------
consensus_9553#0 CGACAACCCCAATTTCCACCACATCGACCAGCGCATCATCAGCCCTGAGCGGATCGAGAG 780
consensus_9553#1 ------------------------------------------------------------
consensus_9553#0 CCATGCCAACAACTGGAAGGACGTTGATTACCTCATCTTCAACACCTACATCTGGTGGAT 840
consensus_9553#1 ------------------------------------------------------------
consensus_9553#0 GAACAACGAAGACATCAAAGTCAGGAGGCCAAATTCAACTTCTTGGTCAGATCACGACGA 900
consensus_9553#1 ------------------------------------------------------------
consensus_9553#0 GGTGCCAAGGATCGAGACCTATGGCCGTGTGTTCAAGACTTGGTCGACCTGGCTGGAACA 960
consensus_9553#1 ------------------------------------------------------------
consensus_9553#0 GAATGTTGATCCTGCCAGGACTTCGGTGTTCTTCATGACAATTTCTCCTCTTCACAACAG 1020
consensus_9553#1 ------------------------------------------------------------
consensus_9553#0 CCCAGCACAATGGGGGAACCCGAACGGGATCAAATGCGTAAAGGAGACACTTCCAGTCCT 1080
consensus_9553#1 -CCAGCACAATGGGGGAACCCGAACGGGATCAAATGCGTAAAGGAGACACTTCCAGTCCT 59
***********************************************************
consensus_9553#0 CAACTACACCAAGCCACTGGATCTCAACCATGACATGCGGATGTACGACCTGGTAGCAAA 1140
consensus_9553#1 CAACTACACCAAGCCACTGGATCTCAACCATGACATGCGGATGTACGACCTGGTAGCAAA 119
************************************************************
consensus_9553#0 AGTTGCTAAAAACATGAAGAATGTTCCAGTGTCGTTGATCGACATCACAAGGATGTCAGA 1200
consensus_9553#1 AGTTGCTAAAAACATGAAGAATGTTCCAGTGTCGTTGATCGACATCACAAGGATGTCAGA 179
************************************************************
consensus_9553#0 TTACAGGAAGGATGCCCACACATCATTGTATTCCATCCGTCAGGGTAAACTGTTGACACC 1260
consensus_9553#1 TTACAGGAAGGATGCCCACACATCATTGTATTCCATCCGTCAGGGTAAACTGTTGACACC 239
************************************************************
consensus_9553#0 GGAGCAGAAGGCTGACCCACAGAAGTACGCTGACTGCATCCATTGGTGCCTTCCTGGGGT 1320
consensus_9553#1 GGAGCAGAAGGCTGACCCACAGAAGTACGCTGACTGCATCCATTGGTGCCTTCCTGGGGT 299
************************************************************
consensus_9553#0 ACCAGACGTCTGGAACCAGATACTCTACACCAGGATCCTCTCCAAATCCTCCCCTCCATC 1380
consensus_9553#1 ACCAGACGTTTGGAACCAGATACTTTACACCAGGATCCTCTCCAAATCCTCCCCTCCATC 359
********* ************** ***********************************
consensus_9553#0 CACACATCCCTCTCTCCCTCCACAATGACAAGCAGGGAGCATGATTTTTTTTTTTGCCCC 1440
consensus_9553#1 CACACATCCCTTTTTCCCTCCACAATGACAAGCAGGGAGCATGATTTTTTTT--TGCCCC 417
*********** * ************************************** ******
consensus_9553#0 ATCGTATACTATATAGGAAATGTATCATTACTATTCAATTTTTTTGGTAGTTTGGTGAAG 1500
consensus_9553#1 ATCGTATACTATATAGGAAATGTATCATTACTATTCAATTTTTTTGGTAGTTTGGTGAAG 477
************************************************************
consensus_9553#0 AAAATCAAGCTAGAGAGAGAAAGGATGGAGTGGGCTGTTTACTGGTGGCATGTAAAATCG 1560
consensus_9553#1 AAAATCAAGCTAGAGAGAGAAAGGATGGAGTGGGCTGTTTACTGGTGGCATGTAAAATCG 537
************************************************************
consensus_9553#0 TTCAATTGAATTGTAAATTAGTTTTGAGCTAACCAATTGAGCAAACAGCACTGGTGNAGA 1620
consensus_9553#1 TTCAATTGAATTGTAAATTAGTTTTGAGCTAACCAATTGAGCAAACAGCACTGTTGTAGA 597
***************************************************** ** ***
consensus_9553#0 CACTCGGGACTNTGGACTGAGAAATCAGCTGGCAATACATATATACAGGGGGGCACAGTG 1680
consensus_9553#1 CACTCGGTACTTTGGACTGTGAAATCAGCTGGCAATACATATATACAGGGGGGCACAGTG 657
******* *** ******* ****************************************
consensus_9553#0 ATTAATCTGAAAAAAAA-- 1697
consensus_9553#1 ATTAATGGGAGATCAATTT 676
****** ** * **
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||