These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9554#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1056 fasta sequence [CTTCCCCGCCGGCCGCCGCTCCCCTCCTCGCCACCGCCGCCATGCCTTTCCACTTCCAATTCCCATGGCTCCCCAACAACCCCACCTCCTCCTCCTCCTCCCCAACGAAACCACCTAGCCCTGCAATCCCCAACCCCTTCCTCCCCATCCAGGCCGGCCTCGCCTCCTTCCTCTCCTCCCTCCCGCTCCCACGCGCGGCCTTCCCGCCGCCGCCCTGGGCTCGCATCTCCTCCGCCTCAGCCTCCGCGGCCTCGGCCTCGGCTCTCCCCGTGGCGGAGATCGAGGAGCGGCTCGCGGGGGTCCCCGTGTACGCGCTCGCCAACTCCTCGCAGGAGTTCGTGCTCGTGTCGTCCGCCCGCGGTGGGGGTGGGGGTGGGGGAGGTGCCCGGGCGGCGGTGCCGCCGCCGGCGCTCGGGCTCCTGTGCTTCCGGAGGGAGGACGCCGACGCCCTCCTGGCGCAGATGGACGGGGACATGGCGGCTGGCTCCACCGTCGTGCCCGTCGCGCTAAACAAGGTTATCCAACTTAAGTCCGATGGTGTGGCATTTAGATTTGTTCCTGATTCTTCTCAGGTGGCAAACGCAATGAAGTTAATGGAAAATGAAGGCCAGTATGTGAATGATGGATTTCCAGGGGTT-CCAGTTTTTCAGT-CAAGGAGTCTAGTCCTGATGAGTTATAACAAGAGATATCGTCCAGTTTTCTTCAGAAAGGAGGACTTGGATAACTCACTACATCGAGCCTCTCGTGACCAGCAAAAGCCTAACCCTGCTGTAAAAATGGGTGACATTCAGGTTTCTTCTTTGGAGAATATCATCAAATCTATGAAGGATAGCTCCTCTTCCAAATGGGATGATGCTGTTTTTATTCCTCCAGGATTTGATCTTGCTACTAGTTCAAAGCAATCGAATCATGACAACTAGATCTTTATTTATGTTGAAGCTGCTTAACTGCTCTTGTCATGGAAATGCTTACATGAACATATTGAAGAAATAGAATACATGTTCATACCATACTAGCAACTTGATAATGGGTAATGCAATTATAAGTTAAAAAAAA] [+] EMBL AK071498 [CTTCCCCGCCGGCCGCCGCTCCCCTCCTCGCCACCGCCGCCATGCCTTTCCACTTCCAATTCCCATGGCTCCCCAACAACCCCACCTCCTCCTCCTCCTCCCCAACGAAACCACCTAGCCCTGCAATCCCCAACCCCTTCCTCCCCATCCAGGCCGGCCTCGCCTCCTTCCTCTCCTCCCTCCCGCTCCCACGCGCGGCCTTCCCGCCGCCGCCCTGGGCTCGCATCTCCTCCGCCTCAGCCTCCGCGGCCTCGGCCTCGGCTCTCCCCGTGGCGGAGATCGAGGAGCGGCTCGCGGGGGTCCCCGTGTACGCGCTCGCCAACTCCTCGCAGGAGTTCGTGCTCGTGTCGTCCGCCCGCGGTGGGGGTGGGGGTGGGGGAGGTGCCCGGGCGGCGGTGCCGCCGCCGGCGCTCGGGCTCCTGTGCTTCCGGAGGGAGGACGCCGACGCCCTCCTGGCGCAGATGGACGGGGACATGGCGGCTGGCTCCACCGTCGTGCCCGTCGCGCTAAACAAGGTTATCCAACTTAAGTCCGATGGTGTGGCATTTAGATTTGTTCCTGATTCTTCTCAGGTGGCAAACGCAATGAAGTTAATGGAAAATGAAGGCCAGTATGTGAATGATGGATTTCCAGGGGTT CCAGTTTTTCAGT CAAGGAGTCTAGTCCTGATGAGTTATAACAAGAGATATCGTCCAGTTTTCTTCAGAAAGGAGGACTTGGATAACTCACTACATCGAGCCTCTCGTGACCAGCAAAAGCCTAACCCTGCTGTAAAAATGGGTGACATTCAGGTTTCTTCTTTGGAGAATATCATCAAATCTATGAAGGATAGCTCCTCTTCCAAATGGGATGATGCTGTTTTTATTCCTCCAGGATTTGATCTTGCTACTAGTTCAAAGCAATCGAATCATGACAACTAGATCTTTATTTATGTTGAAGCTGCTTAACTGCTCTTGTCATGGAAATGCTTACATGAACATATTGAAGAAATAGAATACATGTTCATACCATACTAGCAACTTGATAATGGGTAATGCAATTATAAGTTt ] [+] EMBL CA757016 [ CGGTGCCGCCGCCGGCGCTCGGGCTCCTGTGCTTCCGGAGGGAGGACGCCGACGCCCTCCTGGCGCAGATGGACGGGGACATGGCGGCTGGCTCCACCGTCGTGCCCGTCGCGCTAAACAAGGTTATCCAACTTAAGTCCGATGGTGTGGCATTTAGATTTGTTCCTGATTCTTCTCAGGTGGCAAACGCAATGAAGTTAATGGAAAATGAAGGCCAGTATGTGAATGATGGATTT ] [+] EMBL AU094368 [ TAATGGAAAATGAAGGCCAGTATGTGAATGATGGATTTCCAGGGGTTCCCAGTTTTTCAGTCCAAGGAGTCTAGTCCTGATGAGTGATAACAAGAGATATCGTCCAGTTTTCTTCAGAAAGGAGGACTTGGATAACTCACTACATCGANCCTCTCGTGACCAGCAAAAGCCTAACCCTGCTGTAAAAATGGGTGACATTCAGGTTTCTTCTTTGGAGAATATCATCAAATCTATGAAGGATAGCTCCTCTTCCAAATGGGATGATGCTGTTTTTATTCCTCCAGGATTTGATCTTGCTACTAGTTCAAAGCAATCGAATCATGACAACTAGATCTTTATTTATGTTGAAGCTGCTTAACTGCTCTTGTCATGGAAATGCTTACATGAACATATTGAAGAAATAGAATACATGTTCATACCAaaaaaaaa ] [+] EMBL CF308067 [ TTATTCCTCCAGGATTTGATCTTGCTACTAGTTCAAAGCAATCGAATCATGACAACTAGATCTTTATTTATGTTGAAGCTGCTTAACTGCTCTTGTCATGGAAATGCTTACATGAACATATTGAAGAAATAGAATACATGTTCATACCATACTAGCAACTTGATAATGGGTAATGCAATTATAAGTTAAAAAAA ] [-] EMBL CF308068 [ TATTCCTCCAGGATTTGATCTTGCTACTAGTTCAAAGCAATCGAATCATGACAAATAGATCTTTATTTATGTTGAAGCTGCTTAACTGCTCTTGTCATGGAAATGCTTACATGAACATATTGAAGAAATAGAATACATGTTCATACCATACTAGCAACTTGATAATGGGTAATGCAATTAGAAGTTAAAAAAAA] consensusID : consensus_9554#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 373 fasta sequence [TCCCCNCCANCCGCCNCACCCCNCCTNACCACCACCNCCATNCCTTTCCACTTCCAATTCCCATGGCTCCCCAACAACCCCACCTCCTCCNNCTCCTCCCCAACGAAACCACCTAGCCCTGCAATCCCCAACCCCTTCCTCCCCATCCAGGCCGGCCTCGCTCCTTCCTCTNCTCCCTCCNGCTCCCACGCGCGGCCTTCCCGCCGGCGCCCTGGGNTCGCATCTCCTCCGCCTCAGCCTCCGCGGCCTCGGCTCGGCTCTCCCCGTGGCGGAGATCGAGGAGCGGCTCGGGAGGGGTCCNGTGTACGCGNTCGCCAACTTCTCGCAGGAGTTCGTGCTCGTGTCGTCCGGNCGCGTTGGGGGTNGGGGGTTG] [+] EMBL OSC187 [TCCCCNCCANCCGCCNCACCCCNCCTNACCACCACCNCCATNCCTTTCCACTTCCAATTCCCATGGCTCCCCAACAACCCCACCTCCTCCNNCTCCTCCCCAACGAAACCACCTAGCCCTGCAATCCCCAACCCCTTCCTCCCCATCCAGGCCGGCCTCGCTCCTTCCTCTNCTCCCTCCNGCTCCCACGCGCGGCCTTCCCGCCGGCGCCCTGGGNTCGCATCTCCTCCGCCTCAGCCTCCGCGGCCTCGGCTCGGCTCTCCCCGTGGCGGAGATCGAGGAGCGGCTCGGGAGGGGTCCNGTGTACGCGNTCGCCAACTTCTCGCAGGAGTTCGTGCTCGTGTCGTCCGGNCGCGTTGGGGGTNGGGGGTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9554#0 CTTCCCCGCCGGCCGCCGCTCCCCTCCTCGCCACCGCCGCCATGCCTTTCCACTTCCAAT 60 consensus_9554#1 --TCCCCNCCANCCGCCNCACCCCNCCTNACCACCACCNCCATNCCTTTCCACTTCCAAT 58 ***** ** ***** * **** *** ***** ** **** **************** consensus_9554#0 TCCCATGGCTCCCCAACAACCCCACCTCCTCCTCCTCCTCCCCAACGAAACCACCTAGCC 120 consensus_9554#1 TCCCATGGCTCCCCAACAACCCCACCTCCTCCNNCTCCTCCCCAACGAAACCACCTAGCC 118 ******************************** ************************** consensus_9554#0 CTGCAATCCCCAACCCCTTCCTCCCCATCCAGGCCGGCCTCGCCTCCTTCCTCTCCTCCC 180 consensus_9554#1 CTGCAATCCCCAACCCCTTCCTCCCCATCCAGGCCGGCCTCGC-TCCTTCCTCTNCTCCC 177 ******************************************* ********** ***** consensus_9554#0 TCCCGCTCCCACGCGCGGCCTTCCCGCCGCCGCCCTGGGCTCGCATCTCCTCCGCCTCAG 240 consensus_9554#1 TCCNGCTCCCACGCGCGGCCTTCCCGCCGGCGCCCTGGGNTCGCATCTCCTCCGCCTCAG 237 *** ************************* ********* ******************** consensus_9554#0 CCTCCGCGGCCTCGGCCTCGGCTCTCCCCGTGGCGGAGATCGAGGAGCGGCTCGCGGGGG 300 consensus_9554#1 CCTCCGCGGCCTCGGC-TCGGCTCTCCCCGTGGCGGAGATCGAGGAGCGGCTCGGGAGGG 296 **************** ************************************* * *** consensus_9554#0 TCCCCGTGTACGCGCTCGCCAACTCCTCGCAGGAGTTCGTGCTCGTGTCGTCCGCCCGCG 360 consensus_9554#1 GTCCNGTGTACGCGNTCGCCAACTTCTCGCAGGAGTTCGTGCTCGTGTCGTCCGGNCGCG 356 ** ********* ********* ***************************** **** consensus_9554#0 GTGGGGGTGGGGGTGGGGGAGGTGCCCGGGCGGCGGTGCCGCCGCCGGCGCTCGGGCTCC 420 consensus_9554#1 TTGGGGGTNGGGGGTTG------------------------------------------- 373 ******* **** * consensus_9554#0 TGTGCTTCCGGAGGGAGGACGCCGACGCCCTCCTGGCGCAGATGGACGGGGACATGGCGG 480 consensus_9554#1 ------------------------------------------------------------ consensus_9554#0 CTGGCTCCACCGTCGTGCCCGTCGCGCTAAACAAGGTTATCCAACTTAAGTCCGATGGTG 540 consensus_9554#1 ------------------------------------------------------------ consensus_9554#0 TGGCATTTAGATTTGTTCCTGATTCTTCTCAGGTGGCAAACGCAATGAAGTTAATGGAAA 600 consensus_9554#1 ------------------------------------------------------------ consensus_9554#0 ATGAAGGCCAGTATGTGAATGATGGATTTCCAGGGGTTCCAGTTTTTCAGTCAAGGAGTC 660 consensus_9554#1 ------------------------------------------------------------ consensus_9554#0 TAGTCCTGATGAGTTATAACAAGAGATATCGTCCAGTTTTCTTCAGAAAGGAGGACTTGG 720 consensus_9554#1 ------------------------------------------------------------ consensus_9554#0 ATAACTCACTACATCGAGCCTCTCGTGACCAGCAAAAGCCTAACCCTGCTGTAAAAATGG 780 consensus_9554#1 ------------------------------------------------------------ consensus_9554#0 GTGACATTCAGGTTTCTTCTTTGGAGAATATCATCAAATCTATGAAGGATAGCTCCTCTT 840 consensus_9554#1 ------------------------------------------------------------ consensus_9554#0 CCAAATGGGATGATGCTGTTTTTATTCCTCCAGGATTTGATCTTGCTACTAGTTCAAAGC 900 consensus_9554#1 ------------------------------------------------------------ consensus_9554#0 AATCGAATCATGACAACTAGATCTTTATTTATGTTGAAGCTGCTTAACTGCTCTTGTCAT 960 consensus_9554#1 ------------------------------------------------------------ consensus_9554#0 GGAAATGCTTACATGAACATATTGAAGAAATAGAATACATGTTCATACCATACTAGCAAC 1020 consensus_9554#1 ------------------------------------------------------------ consensus_9554#0 TTGATAATGGGTAATGCAATTATAAGTTAAAAAAAA 1056 consensus_9554#1 ------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||