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Oryza sativa
cluster # 9554 cluster # 9554       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9554#0 length = 1056 sequences # 5  
consensus_9554#1 length = 373 sequences # 1  

consensusID : consensus_9554#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1056
fasta sequence
                              [CTTCCCCGCCGGCCGCCGCTCCCCTCCTCGCCACCGCCGCCATGCCTTTCCACTTCCAATTCCCATGGCTCCCCAACAACCCCACCTCCTCCTCCTCCTCCCCAACGAAACCACCTAGCCCTGCAATCCCCAACCCCTTCCTCCCCATCCAGGCCGGCCTCGCCTCCTTCCTCTCCTCCCTCCCGCTCCCACGCGCGGCCTTCCCGCCGCCGCCCTGGGCTCGCATCTCCTCCGCCTCAGCCTCCGCGGCCTCGGCCTCGGCTCTCCCCGTGGCGGAGATCGAGGAGCGGCTCGCGGGGGTCCCCGTGTACGCGCTCGCCAACTCCTCGCAGGAGTTCGTGCTCGTGTCGTCCGCCCGCGGTGGGGGTGGGGGTGGGGGAGGTGCCCGGGCGGCGGTGCCGCCGCCGGCGCTCGGGCTCCTGTGCTTCCGGAGGGAGGACGCCGACGCCCTCCTGGCGCAGATGGACGGGGACATGGCGGCTGGCTCCACCGTCGTGCCCGTCGCGCTAAACAAGGTTATCCAACTTAAGTCCGATGGTGTGGCATTTAGATTTGTTCCTGATTCTTCTCAGGTGGCAAACGCAATGAAGTTAATGGAAAATGAAGGCCAGTATGTGAATGATGGATTTCCAGGGGTT-CCAGTTTTTCAGT-CAAGGAGTCTAGTCCTGATGAGTTATAACAAGAGATATCGTCCAGTTTTCTTCAGAAAGGAGGACTTGGATAACTCACTACATCGAGCCTCTCGTGACCAGCAAAAGCCTAACCCTGCTGTAAAAATGGGTGACATTCAGGTTTCTTCTTTGGAGAATATCATCAAATCTATGAAGGATAGCTCCTCTTCCAAATGGGATGATGCTGTTTTTATTCCTCCAGGATTTGATCTTGCTACTAGTTCAAAGCAATCGAATCATGACAACTAGATCTTTATTTATGTTGAAGCTGCTTAACTGCTCTTGTCATGGAAATGCTTACATGAACATATTGAAGAAATAGAATACATGTTCATACCATACTAGCAACTTGATAATGGGTAATGCAATTATAAGTTAAAAAAAA]

[+] EMBL AK071498             [CTTCCCCGCCGGCCGCCGCTCCCCTCCTCGCCACCGCCGCCATGCCTTTCCACTTCCAATTCCCATGGCTCCCCAACAACCCCACCTCCTCCTCCTCCTCCCCAACGAAACCACCTAGCCCTGCAATCCCCAACCCCTTCCTCCCCATCCAGGCCGGCCTCGCCTCCTTCCTCTCCTCCCTCCCGCTCCCACGCGCGGCCTTCCCGCCGCCGCCCTGGGCTCGCATCTCCTCCGCCTCAGCCTCCGCGGCCTCGGCCTCGGCTCTCCCCGTGGCGGAGATCGAGGAGCGGCTCGCGGGGGTCCCCGTGTACGCGCTCGCCAACTCCTCGCAGGAGTTCGTGCTCGTGTCGTCCGCCCGCGGTGGGGGTGGGGGTGGGGGAGGTGCCCGGGCGGCGGTGCCGCCGCCGGCGCTCGGGCTCCTGTGCTTCCGGAGGGAGGACGCCGACGCCCTCCTGGCGCAGATGGACGGGGACATGGCGGCTGGCTCCACCGTCGTGCCCGTCGCGCTAAACAAGGTTATCCAACTTAAGTCCGATGGTGTGGCATTTAGATTTGTTCCTGATTCTTCTCAGGTGGCAAACGCAATGAAGTTAATGGAAAATGAAGGCCAGTATGTGAATGATGGATTTCCAGGGGTT CCAGTTTTTCAGT CAAGGAGTCTAGTCCTGATGAGTTATAACAAGAGATATCGTCCAGTTTTCTTCAGAAAGGAGGACTTGGATAACTCACTACATCGAGCCTCTCGTGACCAGCAAAAGCCTAACCCTGCTGTAAAAATGGGTGACATTCAGGTTTCTTCTTTGGAGAATATCATCAAATCTATGAAGGATAGCTCCTCTTCCAAATGGGATGATGCTGTTTTTATTCCTCCAGGATTTGATCTTGCTACTAGTTCAAAGCAATCGAATCATGACAACTAGATCTTTATTTATGTTGAAGCTGCTTAACTGCTCTTGTCATGGAAATGCTTACATGAACATATTGAAGAAATAGAATACATGTTCATACCATACTAGCAACTTGATAATGGGTAATGCAATTATAAGTTt       ]
[+] EMBL CA757016             [                                                                                                                                                                                                                                                                                                                                                                                                         CGGTGCCGCCGCCGGCGCTCGGGCTCCTGTGCTTCCGGAGGGAGGACGCCGACGCCCTCCTGGCGCAGATGGACGGGGACATGGCGGCTGGCTCCACCGTCGTGCCCGTCGCGCTAAACAAGGTTATCCAACTTAAGTCCGATGGTGTGGCATTTAGATTTGTTCCTGATTCTTCTCAGGTGGCAAACGCAATGAAGTTAATGGAAAATGAAGGCCAGTATGTGAATGATGGATTT                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU094368             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TAATGGAAAATGAAGGCCAGTATGTGAATGATGGATTTCCAGGGGTTCCCAGTTTTTCAGTCCAAGGAGTCTAGTCCTGATGAGTGATAACAAGAGATATCGTCCAGTTTTCTTCAGAAAGGAGGACTTGGATAACTCACTACATCGANCCTCTCGTGACCAGCAAAAGCCTAACCCTGCTGTAAAAATGGGTGACATTCAGGTTTCTTCTTTGGAGAATATCATCAAATCTATGAAGGATAGCTCCTCTTCCAAATGGGATGATGCTGTTTTTATTCCTCCAGGATTTGATCTTGCTACTAGTTCAAAGCAATCGAATCATGACAACTAGATCTTTATTTATGTTGAAGCTGCTTAACTGCTCTTGTCATGGAAATGCTTACATGAACATATTGAAGAAATAGAATACATGTTCATACCAaaaaaaaa                                      ]
[+] EMBL CF308067             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTATTCCTCCAGGATTTGATCTTGCTACTAGTTCAAAGCAATCGAATCATGACAACTAGATCTTTATTTATGTTGAAGCTGCTTAACTGCTCTTGTCATGGAAATGCTTACATGAACATATTGAAGAAATAGAATACATGTTCATACCATACTAGCAACTTGATAATGGGTAATGCAATTATAAGTTAAAAAAA ]
[-] EMBL CF308068             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TATTCCTCCAGGATTTGATCTTGCTACTAGTTCAAAGCAATCGAATCATGACAAATAGATCTTTATTTATGTTGAAGCTGCTTAACTGCTCTTGTCATGGAAATGCTTACATGAACATATTGAAGAAATAGAATACATGTTCATACCATACTAGCAACTTGATAATGGGTAATGCAATTAGAAGTTAAAAAAAA]


>consensus_9554#0 CTTCCCCGCCGGCCGCCGCTCCCCTCCTCGCCACCGCCGCCATGCCTTTCCACTTCCAAT TCCCATGGCTCCCCAACAACCCCACCTCCTCCTCCTCCTCCCCAACGAAACCACCTAGCC CTGCAATCCCCAACCCCTTCCTCCCCATCCAGGCCGGCCTCGCCTCCTTCCTCTCCTCCC TCCCGCTCCCACGCGCGGCCTTCCCGCCGCCGCCCTGGGCTCGCATCTCCTCCGCCTCAG CCTCCGCGGCCTCGGCCTCGGCTCTCCCCGTGGCGGAGATCGAGGAGCGGCTCGCGGGGG TCCCCGTGTACGCGCTCGCCAACTCCTCGCAGGAGTTCGTGCTCGTGTCGTCCGCCCGCG GTGGGGGTGGGGGTGGGGGAGGTGCCCGGGCGGCGGTGCCGCCGCCGGCGCTCGGGCTCC TGTGCTTCCGGAGGGAGGACGCCGACGCCCTCCTGGCGCAGATGGACGGGGACATGGCGG CTGGCTCCACCGTCGTGCCCGTCGCGCTAAACAAGGTTATCCAACTTAAGTCCGATGGTG TGGCATTTAGATTTGTTCCTGATTCTTCTCAGGTGGCAAACGCAATGAAGTTAATGGAAA ATGAAGGCCAGTATGTGAATGATGGATTTCCAGGGGTTCCAGTTTTTCAGTCAAGGAGTC TAGTCCTGATGAGTTATAACAAGAGATATCGTCCAGTTTTCTTCAGAAAGGAGGACTTGG ATAACTCACTACATCGAGCCTCTCGTGACCAGCAAAAGCCTAACCCTGCTGTAAAAATGG GTGACATTCAGGTTTCTTCTTTGGAGAATATCATCAAATCTATGAAGGATAGCTCCTCTT CCAAATGGGATGATGCTGTTTTTATTCCTCCAGGATTTGATCTTGCTACTAGTTCAAAGC AATCGAATCATGACAACTAGATCTTTATTTATGTTGAAGCTGCTTAACTGCTCTTGTCAT GGAAATGCTTACATGAACATATTGAAGAAATAGAATACATGTTCATACCATACTAGCAAC TTGATAATGGGTAATGCAATTATAAGTTAAAAAAAA



consensusID : consensus_9554#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 373
fasta sequence
                              [TCCCCNCCANCCGCCNCACCCCNCCTNACCACCACCNCCATNCCTTTCCACTTCCAATTCCCATGGCTCCCCAACAACCCCACCTCCTCCNNCTCCTCCCCAACGAAACCACCTAGCCCTGCAATCCCCAACCCCTTCCTCCCCATCCAGGCCGGCCTCGCTCCTTCCTCTNCTCCCTCCNGCTCCCACGCGCGGCCTTCCCGCCGGCGCCCTGGGNTCGCATCTCCTCCGCCTCAGCCTCCGCGGCCTCGGCTCGGCTCTCCCCGTGGCGGAGATCGAGGAGCGGCTCGGGAGGGGTCCNGTGTACGCGNTCGCCAACTTCTCGCAGGAGTTCGTGCTCGTGTCGTCCGGNCGCGTTGGGGGTNGGGGGTTG]

[+] EMBL OSC187               [TCCCCNCCANCCGCCNCACCCCNCCTNACCACCACCNCCATNCCTTTCCACTTCCAATTCCCATGGCTCCCCAACAACCCCACCTCCTCCNNCTCCTCCCCAACGAAACCACCTAGCCCTGCAATCCCCAACCCCTTCCTCCCCATCCAGGCCGGCCTCGCTCCTTCCTCTNCTCCCTCCNGCTCCCACGCGCGGCCTTCCCGCCGGCGCCCTGGGNTCGCATCTCCTCCGCCTCAGCCTCCGCGGCCTCGGCTCGGCTCTCCCCGTGGCGGAGATCGAGGAGCGGCTCGGGAGGGGTCCNGTGTACGCGNTCGCCAACTTCTCGCAGGAGTTCGTGCTCGTGTCGTCCGGNCGCGTTGGGGGTNGGGGGTTG]


>consensus_9554#1 TCCCCNCCANCCGCCNCACCCCNCCTNACCACCACCNCCATNCCTTTCCACTTCCAATTC CCATGGCTCCCCAACAACCCCACCTCCTCCNNCTCCTCCCCAACGAAACCACCTAGCCCT GCAATCCCCAACCCCTTCCTCCCCATCCAGGCCGGCCTCGCTCCTTCCTCTNCTCCCTCC NGCTCCCACGCGCGGCCTTCCCGCCGGCGCCCTGGGNTCGCATCTCCTCCGCCTCAGCCT CCGCGGCCTCGGCTCGGCTCTCCCCGTGGCGGAGATCGAGGAGCGGCTCGGGAGGGGTCC NGTGTACGCGNTCGCCAACTTCTCGCAGGAGTTCGTGCTCGTGTCGTCCGGNCGCGTTGG GGGTNGGGGGTTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9554#0      CTTCCCCGCCGGCCGCCGCTCCCCTCCTCGCCACCGCCGCCATGCCTTTCCACTTCCAAT 60
consensus_9554#1      --TCCCCNCCANCCGCCNCACCCCNCCTNACCACCACCNCCATNCCTTTCCACTTCCAAT 58
                        ***** **  ***** * **** ***  ***** ** **** ****************

consensus_9554#0      TCCCATGGCTCCCCAACAACCCCACCTCCTCCTCCTCCTCCCCAACGAAACCACCTAGCC 120
consensus_9554#1      TCCCATGGCTCCCCAACAACCCCACCTCCTCCNNCTCCTCCCCAACGAAACCACCTAGCC 118
                      ********************************  **************************

consensus_9554#0      CTGCAATCCCCAACCCCTTCCTCCCCATCCAGGCCGGCCTCGCCTCCTTCCTCTCCTCCC 180
consensus_9554#1      CTGCAATCCCCAACCCCTTCCTCCCCATCCAGGCCGGCCTCGC-TCCTTCCTCTNCTCCC 177
                      ******************************************* ********** *****

consensus_9554#0      TCCCGCTCCCACGCGCGGCCTTCCCGCCGCCGCCCTGGGCTCGCATCTCCTCCGCCTCAG 240
consensus_9554#1      TCCNGCTCCCACGCGCGGCCTTCCCGCCGGCGCCCTGGGNTCGCATCTCCTCCGCCTCAG 237
                      *** ************************* ********* ********************

consensus_9554#0      CCTCCGCGGCCTCGGCCTCGGCTCTCCCCGTGGCGGAGATCGAGGAGCGGCTCGCGGGGG 300
consensus_9554#1      CCTCCGCGGCCTCGGC-TCGGCTCTCCCCGTGGCGGAGATCGAGGAGCGGCTCGGGAGGG 296
                      **************** ************************************* * ***

consensus_9554#0      TCCCCGTGTACGCGCTCGCCAACTCCTCGCAGGAGTTCGTGCTCGTGTCGTCCGCCCGCG 360
consensus_9554#1      GTCCNGTGTACGCGNTCGCCAACTTCTCGCAGGAGTTCGTGCTCGTGTCGTCCGGNCGCG 356
                        ** ********* ********* *****************************  ****

consensus_9554#0      GTGGGGGTGGGGGTGGGGGAGGTGCCCGGGCGGCGGTGCCGCCGCCGGCGCTCGGGCTCC 420
consensus_9554#1      TTGGGGGTNGGGGGTTG------------------------------------------- 373
                       ******* ****   *                                           

consensus_9554#0      TGTGCTTCCGGAGGGAGGACGCCGACGCCCTCCTGGCGCAGATGGACGGGGACATGGCGG 480
consensus_9554#1      ------------------------------------------------------------
                                                                                  

consensus_9554#0      CTGGCTCCACCGTCGTGCCCGTCGCGCTAAACAAGGTTATCCAACTTAAGTCCGATGGTG 540
consensus_9554#1      ------------------------------------------------------------
                                                                                  

consensus_9554#0      TGGCATTTAGATTTGTTCCTGATTCTTCTCAGGTGGCAAACGCAATGAAGTTAATGGAAA 600
consensus_9554#1      ------------------------------------------------------------
                                                                                  

consensus_9554#0      ATGAAGGCCAGTATGTGAATGATGGATTTCCAGGGGTTCCAGTTTTTCAGTCAAGGAGTC 660
consensus_9554#1      ------------------------------------------------------------
                                                                                  

consensus_9554#0      TAGTCCTGATGAGTTATAACAAGAGATATCGTCCAGTTTTCTTCAGAAAGGAGGACTTGG 720
consensus_9554#1      ------------------------------------------------------------
                                                                                  

consensus_9554#0      ATAACTCACTACATCGAGCCTCTCGTGACCAGCAAAAGCCTAACCCTGCTGTAAAAATGG 780
consensus_9554#1      ------------------------------------------------------------
                                                                                  

consensus_9554#0      GTGACATTCAGGTTTCTTCTTTGGAGAATATCATCAAATCTATGAAGGATAGCTCCTCTT 840
consensus_9554#1      ------------------------------------------------------------
                                                                                  

consensus_9554#0      CCAAATGGGATGATGCTGTTTTTATTCCTCCAGGATTTGATCTTGCTACTAGTTCAAAGC 900
consensus_9554#1      ------------------------------------------------------------
                                                                                  

consensus_9554#0      AATCGAATCATGACAACTAGATCTTTATTTATGTTGAAGCTGCTTAACTGCTCTTGTCAT 960
consensus_9554#1      ------------------------------------------------------------
                                                                                  

consensus_9554#0      GGAAATGCTTACATGAACATATTGAAGAAATAGAATACATGTTCATACCATACTAGCAAC 1020
consensus_9554#1      ------------------------------------------------------------
                                                                                  

consensus_9554#0      TTGATAATGGGTAATGCAATTATAAGTTAAAAAAAA 1056
consensus_9554#1      ------------------------------------
                                                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)