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Oryza sativa
cluster # 9557 cluster # 9557       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9557#0 length = 1156 sequences # 5  
consensus_9557#1 length = 387 sequences # 1  

consensusID : consensus_9557#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1156
fasta sequence
                              [ATCGAGCTACATTTTGCTAACTATCCAGTACCAAGAACGGAGCTGCAAGGAAGAGACGTACGATGACCATGACGTCGACGACGACGAAGGCCATGGCGATGGCGGCGGCGGTCCTCGCCGCCGCCGCCGTCGCGGCGACGAACGCGCAGACGTGCGGGAAGCAGAACGACGGCATGATCTGCCCGCACAACCTGTGCTGCAGCCAGTTCGGGTACTGCGGCCTCGGCCGCGACTACTGCGGCACGGGGTGCCAGAGCGGCGCCTGCTGCTCCAGCCAGCGCTGCGGCAGCCAGGGCGGCGGCGCCACCTGCTCCAACAACCAGTGCTGCAGCCAGTACGGCTACTGCGGCTTCGGCTCCGAGTACTGCGGCTCCGGGTGCCAGAACGGGCCGTGCCGCGCCGACATCAAGTGCGGCCGCAACGCCAACGGCGAGCTCTGCCCCAACAACATGTGCTGCAGCCAGTGGGGATACTGCGGCCTCGGCAGCGAGTTCTGCGGCAACGGATGCCAGAGCGGCGCGTGCTGCCCGGAGAAGCGGTGCGGCAAGCAGGCCGGCGGGGACAAGTGCCCCAACAACTTCTGCTGCAGTGCCGGCGGCTACTGCGGCCTCGGCGGCAACTACTGCGGCTCCGGCTGCCAGAGCGGCGGCTGCTACAAGGGTGGCGACGGCATGGCGGCCATCCTGGCTAACAACCAGAGCGTCTCTTTCGAAGGGATCATCGAGTCAGTGGCTGAGCTTGTGTAGATCGATGAGTCGATCGTCGCCATGAGCGTTTTCTGCTTTGTATGCCTCTCGGCGTACAGGGCTTTTCAGCTTAGCTGCCTTTCAATAAAATCACTGATCATGGCGATCGACATGCAGAGCAGTGTTGTGTACGTAGTTGCTCATCTGAATAAATAAAGGGGCTGAGCCTGAGCTGCTGCCTAGCTCGCACCAACAGAGTCCGGCCGGGAGGAGTTGTAGTTTCTGAAGGTGAGCTAGCTAGCTTTGGGATCGATGTATGGATCAGCAATGTAACAATGTGTTGTGGAAGCCCGTAGCTACTAACTAGCTCATTGGTGCATGAAATATATGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK103206             [ATCGAGCTACATTTTGCTAACTATCCAGTACCAAGAACGGAGCTGCAAGGAAGAGACGTACGATGACCATGACGTCGACGACGACGAAGGCCATGGCGATGGCGGCGGCGGTCCTCGCCGCCGCCGCCGTCGCGGCGACGAACGCGCAGACGTGCGGGAAGCAGAACGACGGCATGATCTGCCCGCACAACCTGTGCTGCAGCCAGTTCGGGTACTGCGGCCTCGGCCGCGACTACTGCGGCACGGGGTGCCAGAGCGGCGCCTGCTGCTCCAGCCAGCGCTGCGGCAGCCAGGGCGGCGGCGCCACCTGCTCCAACAACCAGTGCTGCAGCCAGTACGGCTACTGCGGCTTCGGCTCCGAGTACTGCGGCTCCGGGTGCCAGAACGGGCCGTGCCGCGCCGACATCAAGTGCGGCCGCAACGCCAACGGCGAGCTCTGCCCCAACAACATGTGCTGCAGCCAGTGGGGATACTGCGGCCTCGGCAGCGAGTTCTGCGGCAACGGATGCCAGAGCGGCGCGTGCTGCCCGGAGAAGCGGTGCGGCAAGCAGGCCGGCGGGGACAAGTGCCCCAACAACTTCTGCTGCAGTGCCGGCGGCTACTGCGGCCTCGGCGGCAACTACTGCGGCTCCGGCTGCCAGAGCGGCGGCTGCTACAAGGGTGGCGACGGCATGGCGGCCATCCTGGCTAACAACCAGAGCGTCTCTTTCGAAGGGATCATCGAGTCAGTGGCTGAGCTTGTGTAGATCGATGAGTCGATCGTCGCCATGAGCGTTTTCTGCTTTGTATGCCTCTCGGCGTACAGGGCTTTTCAGCTTAGCTGCCTTTCAATAAAATCACTGATCATGGCGATCGACATGCAGAGCAGTGTTGTGTACGTAGTTGCTCATCTGAATAAATAAAGGGGCTGAGCCTGAGCTGCTGCCTAGCTCGCACCAACAGAGTCCGGCCGGGAGGAGTTGTAGTTTCTGAAGGTGAGCTAGCTAGCTTTGGGATCGATGTATGGATCAGCAATGTAACAATGTGTTGTGGAAGCCCGTAGCTACTAACTAGCTCATTGGTGCATGAAATATATGTC                                                                              ]
[+] EMBL AU174453             [           TTTTGCTAACTATCCAGTACCAAGAACGGAGCTGCAAGGAAGAGACGTACGATGACCATGACGTCGACGACGACGAAGGCCATGGCGATGGCGGCGGCGGTCCTCGCCGCCGCCGCCGTCGCGGCGACGAACGCGCAGACGTGCGGGAAGCAGAACGACGGCATGATCTGCCCGCACAACCTGTGCTGCAGCCAGTTCGGGTACTGCGGCCTCGGCCGCGACTACTGCGGCACGGGGTGCCAGAGCGGCGCCTGCTGCTCCAGCCAGCGCTGCGGCAGCCAGGGCGGCGGCGCCACCTGCTCCAACAACCAGTGCTGCAGCCAGTACGGCTACTGCGGCTTCGGCTCCGAGTACTGCGGCTCCGGGTGCCAGAACGGGCCGTGCCGCGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL OSLECTIN             [              TGCTAACTATCCAGTACCAAGAACGGAGCTGCAAGGAAGAGACGTACGATGACCATGACGTCGACGACGACGAAGGCCATGGCGATGGCGGCGGCGGTCCTCGCCGCCGCCGCCGTCGCGGCGACGAACGCGCAGACGTGCGGGAAGCAGAACGACGGCATGATCTGCCCGCACAACCTGTGCTGCAGCCAGTTCGGGTACTGCGGCCTCGGCCGCGACTACTGCGGCACGGGGTGCCAGAGCGGCGCCTGCTGCTCCAGCCAGCGCTGCGGCAGCCAGGGCGGCGGCGCCACCTGCTCCAACAACCAGTGCTGCAGCCAGTACGGCTACTGCGGCTTCGGCTCCGAGTACTGCGGCTCCGGGTGCCAGAACGGGCCGTGCCGCGCCGACATCAAGTGCGGCCGCAACGCCAACGGCGAGCTCTGCCCCAACAACATGTGCTGCAGCCAGTGGGGATACTGCGGCCTCGGCAGCGAGTTCTGCGGCAACGGATGCCAGAGCGGCGCGTGCTGCCCGGAGAAGCGGTGCGGCAAGCAGGCCGGCGGGGACAAGTGCCCCAACAACTTCTGCTGCAGTGCCGGCGGCTACTGCGGCCTCGGCGGCAACTACTGCGGCTCCGGCTGCCAGAGCGGCGGCTGCTACAAGGGTGGCGACGGCATGGCGGCCATCCTGGCTAACAACCAGAGCGTCTCTTTCGAAGGGATCATCGAGTCAGTGGCTGAGCTTGTGTAGATCGATGAGTCGATCGTCGCCATGAGCGTTTTCTGCTTTGTATGCCTCTCGGCGTACAGGGCTTTTCAGCTTAGCTGCCTTTCAATAAAATCACTGATCATGGCGATCGACATGCAGAGCAGTGTTGTGTACGTAGTTGCTCATCTGAATAAATAAAGGGGCTGAGCCTGAGCTGCTGCCTAGCTCGCACCAACAGAGTCCGGCCGGGAGGAGTTGTAGTTTCTGAAGGTGAGCTAGCTAGCTTTGGGATCGATGTATGGATCAGCAATGTAACAATGTGTTGT                                                                                                                              ]
[-] EMBL AU094599             [                                                                                                                                                                                                                                                                                                                                                                                                                                             GCGAGCTCTGCCCCAACAACATGTGCTGCAGCCAGTGGGGATACTGCGGCCTCGGCAGCGAGTTCTGCGGCAACGGATGCCAGAGCGGCGCGTGCTGCCCGGAGAAGCGGTGCGGCAAGCAGGCCGGCGGGGACAAGTGCCCCAACAACTTCTGCTGCAGTGCCGGCGGCTACTGCGGCCTCGGCGGCAACTACTGCGGCTCCGGCTGCCAGAGCGGCGGCTGCTACAAGGGTGGCGACGGCATGGCGGCCATCCTGGCTAACAACCAGAGCGTCTCTTTCGAAGGGATCATCGAGTCAGTGGCTGAGCTTGTGTAGATCGATGAGTCGATCGTCGCCATGAGCGTTTTCTGCTTTGTATGCCTCTCGGCGTACAGGGCTTTTCAGCTTAGCTGCCTTTCAATAAAATCACTGATCATGGCGATCGACATGCAGAGCAGTGTTGTGTACGTAGTTGCTCATCTGAATAAATAAAGGGGCTGAGCCTGAGCTGCTGCCTAGCTCGCACCAACAGAGTCCGGCCGGGAGGAGTTGTAGTTTCTGAAGGTGAGCT                                                                                                                                                                               ]
[+] EMBL AU164978             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TGAATAAATAAAGGGGCTGAGCCTGAGCTGCTGCCTAGCTCGCACCAACAGAGTCCGGCCGGGAGGAGTTGTAGTTTCTGAAGGTGAGCTAGCTAGCTTTGGGATCGATGTATGGATCAGCAATGTAACAATGTGTTGTGGAAGCCCGTAGCTACTAACTAGCTCATTGGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_9557#0 ATCGAGCTACATTTTGCTAACTATCCAGTACCAAGAACGGAGCTGCAAGGAAGAGACGTA CGATGACCATGACGTCGACGACGACGAAGGCCATGGCGATGGCGGCGGCGGTCCTCGCCG CCGCCGCCGTCGCGGCGACGAACGCGCAGACGTGCGGGAAGCAGAACGACGGCATGATCT GCCCGCACAACCTGTGCTGCAGCCAGTTCGGGTACTGCGGCCTCGGCCGCGACTACTGCG GCACGGGGTGCCAGAGCGGCGCCTGCTGCTCCAGCCAGCGCTGCGGCAGCCAGGGCGGCG GCGCCACCTGCTCCAACAACCAGTGCTGCAGCCAGTACGGCTACTGCGGCTTCGGCTCCG AGTACTGCGGCTCCGGGTGCCAGAACGGGCCGTGCCGCGCCGACATCAAGTGCGGCCGCA ACGCCAACGGCGAGCTCTGCCCCAACAACATGTGCTGCAGCCAGTGGGGATACTGCGGCC TCGGCAGCGAGTTCTGCGGCAACGGATGCCAGAGCGGCGCGTGCTGCCCGGAGAAGCGGT GCGGCAAGCAGGCCGGCGGGGACAAGTGCCCCAACAACTTCTGCTGCAGTGCCGGCGGCT ACTGCGGCCTCGGCGGCAACTACTGCGGCTCCGGCTGCCAGAGCGGCGGCTGCTACAAGG GTGGCGACGGCATGGCGGCCATCCTGGCTAACAACCAGAGCGTCTCTTTCGAAGGGATCA TCGAGTCAGTGGCTGAGCTTGTGTAGATCGATGAGTCGATCGTCGCCATGAGCGTTTTCT GCTTTGTATGCCTCTCGGCGTACAGGGCTTTTCAGCTTAGCTGCCTTTCAATAAAATCAC TGATCATGGCGATCGACATGCAGAGCAGTGTTGTGTACGTAGTTGCTCATCTGAATAAAT AAAGGGGCTGAGCCTGAGCTGCTGCCTAGCTCGCACCAACAGAGTCCGGCCGGGAGGAGT TGTAGTTTCTGAAGGTGAGCTAGCTAGCTTTGGGATCGATGTATGGATCAGCAATGTAAC AATGTGTTGTGGAAGCCCGTAGCTACTAACTAGCTCATTGGTGCATGAAATATATGTCAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAA



consensusID : consensus_9557#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 387
fasta sequence
                              [GCTAANAACCCAGAGCGTCTCTTTCGAAGGGATCATCGAGTCAAGTGGCTGAGCTTGTGTAGATCGATGAGTCGATCGTCGCNCATGAGCGTTTTCTGCTTTTGNTATCTCTCGNCCGTACAGGCTTTTCAGCTTAGCTGCCTTTCAATAAAATCACTGATCATGGCGATCGACATGCAGAGCAGTGTTGTGTACGTAGTTGCTCATCTGAATAAATAAAGGGCTGAGCCTGAGCTGCTGCCTAGCTCGCACCAACAGAGTCCGGCCGGGAGGAGTTGTAGTTTCTGAAGGTGAGCTAGCTAGCTTTGGGATCGATGTATGGATCAGCAATGTAACAATGTGTTGTGGAAGCCCGTAGCTACTAACTAGCTCATTNGGNTNGNCNAA]

[-] EMBL OSC4361              [GCTAANAACCCAGAGCGTCTCTTTCGAAGGGATCATCGAGTCAAGTGGCTGAGCTTGTGTAGATCGATGAGTCGATCGTCGCNCATGAGCGTTTTCTGCTTTTGNTATCTCTCGNCCGTACAGGCTTTTCAGCTTAGCTGCCTTTCAATAAAATCACTGATCATGGCGATCGACATGCAGAGCAGTGTTGTGTACGTAGTTGCTCATCTGAATAAATAAAGGGCTGAGCCTGAGCTGCTGCCTAGCTCGCACCAACAGAGTCCGGCCGGGAGGAGTTGTAGTTTCTGAAGGTGAGCTAGCTAGCTTTGGGATCGATGTATGGATCAGCAATGTAACAATGTGTTGTGGAAGCCCGTAGCTACTAACTAGCTCATTNGGNTNGNCNAA]


>consensus_9557#1 GCTAANAACCCAGAGCGTCTCTTTCGAAGGGATCATCGAGTCAAGTGGCTGAGCTTGTGT AGATCGATGAGTCGATCGTCGCNCATGAGCGTTTTCTGCTTTTGNTATCTCTCGNCCGTA CAGGCTTTTCAGCTTAGCTGCCTTTCAATAAAATCACTGATCATGGCGATCGACATGCAG AGCAGTGTTGTGTACGTAGTTGCTCATCTGAATAAATAAAGGGCTGAGCCTGAGCTGCTG CCTAGCTCGCACCAACAGAGTCCGGCCGGGAGGAGTTGTAGTTTCTGAAGGTGAGCTAGC TAGCTTTGGGATCGATGTATGGATCAGCAATGTAACAATGTGTTGTGGAAGCCCGTAGCT ACTAACTAGCTCATTNGGNTNGNCNAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9557#0      ATCGAGCTACATTTTGCTAACTATCCAGTACCAAGAACGGAGCTGCAAGGAAGAGACGTA 60
consensus_9557#1      ------------------------------------------------------------
                                                                                  

consensus_9557#0      CGATGACCATGACGTCGACGACGACGAAGGCCATGGCGATGGCGGCGGCGGTCCTCGCCG 120
consensus_9557#1      ------------------------------------------------------------
                                                                                  

consensus_9557#0      CCGCCGCCGTCGCGGCGACGAACGCGCAGACGTGCGGGAAGCAGAACGACGGCATGATCT 180
consensus_9557#1      ------------------------------------------------------------
                                                                                  

consensus_9557#0      GCCCGCACAACCTGTGCTGCAGCCAGTTCGGGTACTGCGGCCTCGGCCGCGACTACTGCG 240
consensus_9557#1      ------------------------------------------------------------
                                                                                  

consensus_9557#0      GCACGGGGTGCCAGAGCGGCGCCTGCTGCTCCAGCCAGCGCTGCGGCAGCCAGGGCGGCG 300
consensus_9557#1      ------------------------------------------------------------
                                                                                  

consensus_9557#0      GCGCCACCTGCTCCAACAACCAGTGCTGCAGCCAGTACGGCTACTGCGGCTTCGGCTCCG 360
consensus_9557#1      ------------------------------------------------------------
                                                                                  

consensus_9557#0      AGTACTGCGGCTCCGGGTGCCAGAACGGGCCGTGCCGCGCCGACATCAAGTGCGGCCGCA 420
consensus_9557#1      ------------------------------------------------------------
                                                                                  

consensus_9557#0      ACGCCAACGGCGAGCTCTGCCCCAACAACATGTGCTGCAGCCAGTGGGGATACTGCGGCC 480
consensus_9557#1      ------------------------------------------------------------
                                                                                  

consensus_9557#0      TCGGCAGCGAGTTCTGCGGCAACGGATGCCAGAGCGGCGCGTGCTGCCCGGAGAAGCGGT 540
consensus_9557#1      ------------------------------------------------------------
                                                                                  

consensus_9557#0      GCGGCAAGCAGGCCGGCGGGGACAAGTGCCCCAACAACTTCTGCTGCAGTGCCGGCGGCT 600
consensus_9557#1      ------------------------------------------------------------
                                                                                  

consensus_9557#0      ACTGCGGCCTCGGCGGCAACTACTGCGGCTCCGGCTGCCAGAGCGGCGGCTGCTACAAGG 660
consensus_9557#1      ------------------------------------------------------------
                                                                                  

consensus_9557#0      GTGGCGACGGCATGGCGGCCATCCTGGCTAACAACC-AGAGCGTCTCTTTCGAAGGGATC 719
consensus_9557#1      --------------------------GCTAANAACCCAGAGCGTCTCTTTCGAAGGGATC 34
                                                ***** **** ***********************

consensus_9557#0      ATCGAGTCA-GTGGCTGAGCTTGTGTAGATCGATGAGTCGATCGTCGCC-ATGAGCGTTT 777
consensus_9557#1      ATCGAGTCAAGTGGCTGAGCTTGTGTAGATCGATGAGTCGATCGTCGCNCATGAGCGTTT 94
                      ********* **************************************  **********

consensus_9557#0      TCTGCTTTGTATGCCTCTCGGC-GTACAGGGCTTTTCAGCTTAGCTGCCTTTCAATAAAA 836
consensus_9557#1      TCTGCTTTTGNTATCTCTCGNCCGTACAGG-CTTTTCAGCTTAGCTGCCTTTCAATAAAA 153
                      ********   *  ****** * ******* *****************************

consensus_9557#0      TCACTGATCATGGCGATCGACATGCAGAGCAGTGTTGTGTACGTAGTTGCTCATCTGAAT 896
consensus_9557#1      TCACTGATCATGGCGATCGACATGCAGAGCAGTGTTGTGTACGTAGTTGCTCATCTGAAT 213
                      ************************************************************

consensus_9557#0      AAATAAAGGGGCTGAGCCTGAGCTGCTGCCTAGCTCGCACCAACAGAGTCCGGCCGGGAG 956
consensus_9557#1      AAATAAAGGG-CTGAGCCTGAGCTGCTGCCTAGCTCGCACCAACAGAGTCCGGCCGGGAG 272
                      ********** *************************************************

consensus_9557#0      GAGTTGTAGTTTCTGAAGGTGAGCTAGCTAGCTTTGGGATCGATGTATGGATCAGCAATG 1016
consensus_9557#1      GAGTTGTAGTTTCTGAAGGTGAGCTAGCTAGCTTTGGGATCGATGTATGGATCAGCAATG 332
                      ************************************************************

consensus_9557#0      TAACAATGTGTTGTGGAAGCCCGTAGCTACTAACTAGCTCATTGGTGCATGAAATATATG 1076
consensus_9557#1      TAACAATGTGTTGTGGAAGCCCGTAGCTACTAACTAGCTCATTNGGNTNGNCNAA----- 387
                      ******************************************* *        *      

consensus_9557#0      TCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1136
consensus_9557#1      ------------------------------------------------------------
                                                                                  

consensus_9557#0      AAAAAAAAAAAAAAAAAAAA 1156
consensus_9557#1      --------------------
                                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)