These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9557#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1156 fasta sequence [ATCGAGCTACATTTTGCTAACTATCCAGTACCAAGAACGGAGCTGCAAGGAAGAGACGTACGATGACCATGACGTCGACGACGACGAAGGCCATGGCGATGGCGGCGGCGGTCCTCGCCGCCGCCGCCGTCGCGGCGACGAACGCGCAGACGTGCGGGAAGCAGAACGACGGCATGATCTGCCCGCACAACCTGTGCTGCAGCCAGTTCGGGTACTGCGGCCTCGGCCGCGACTACTGCGGCACGGGGTGCCAGAGCGGCGCCTGCTGCTCCAGCCAGCGCTGCGGCAGCCAGGGCGGCGGCGCCACCTGCTCCAACAACCAGTGCTGCAGCCAGTACGGCTACTGCGGCTTCGGCTCCGAGTACTGCGGCTCCGGGTGCCAGAACGGGCCGTGCCGCGCCGACATCAAGTGCGGCCGCAACGCCAACGGCGAGCTCTGCCCCAACAACATGTGCTGCAGCCAGTGGGGATACTGCGGCCTCGGCAGCGAGTTCTGCGGCAACGGATGCCAGAGCGGCGCGTGCTGCCCGGAGAAGCGGTGCGGCAAGCAGGCCGGCGGGGACAAGTGCCCCAACAACTTCTGCTGCAGTGCCGGCGGCTACTGCGGCCTCGGCGGCAACTACTGCGGCTCCGGCTGCCAGAGCGGCGGCTGCTACAAGGGTGGCGACGGCATGGCGGCCATCCTGGCTAACAACCAGAGCGTCTCTTTCGAAGGGATCATCGAGTCAGTGGCTGAGCTTGTGTAGATCGATGAGTCGATCGTCGCCATGAGCGTTTTCTGCTTTGTATGCCTCTCGGCGTACAGGGCTTTTCAGCTTAGCTGCCTTTCAATAAAATCACTGATCATGGCGATCGACATGCAGAGCAGTGTTGTGTACGTAGTTGCTCATCTGAATAAATAAAGGGGCTGAGCCTGAGCTGCTGCCTAGCTCGCACCAACAGAGTCCGGCCGGGAGGAGTTGTAGTTTCTGAAGGTGAGCTAGCTAGCTTTGGGATCGATGTATGGATCAGCAATGTAACAATGTGTTGTGGAAGCCCGTAGCTACTAACTAGCTCATTGGTGCATGAAATATATGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK103206 [ATCGAGCTACATTTTGCTAACTATCCAGTACCAAGAACGGAGCTGCAAGGAAGAGACGTACGATGACCATGACGTCGACGACGACGAAGGCCATGGCGATGGCGGCGGCGGTCCTCGCCGCCGCCGCCGTCGCGGCGACGAACGCGCAGACGTGCGGGAAGCAGAACGACGGCATGATCTGCCCGCACAACCTGTGCTGCAGCCAGTTCGGGTACTGCGGCCTCGGCCGCGACTACTGCGGCACGGGGTGCCAGAGCGGCGCCTGCTGCTCCAGCCAGCGCTGCGGCAGCCAGGGCGGCGGCGCCACCTGCTCCAACAACCAGTGCTGCAGCCAGTACGGCTACTGCGGCTTCGGCTCCGAGTACTGCGGCTCCGGGTGCCAGAACGGGCCGTGCCGCGCCGACATCAAGTGCGGCCGCAACGCCAACGGCGAGCTCTGCCCCAACAACATGTGCTGCAGCCAGTGGGGATACTGCGGCCTCGGCAGCGAGTTCTGCGGCAACGGATGCCAGAGCGGCGCGTGCTGCCCGGAGAAGCGGTGCGGCAAGCAGGCCGGCGGGGACAAGTGCCCCAACAACTTCTGCTGCAGTGCCGGCGGCTACTGCGGCCTCGGCGGCAACTACTGCGGCTCCGGCTGCCAGAGCGGCGGCTGCTACAAGGGTGGCGACGGCATGGCGGCCATCCTGGCTAACAACCAGAGCGTCTCTTTCGAAGGGATCATCGAGTCAGTGGCTGAGCTTGTGTAGATCGATGAGTCGATCGTCGCCATGAGCGTTTTCTGCTTTGTATGCCTCTCGGCGTACAGGGCTTTTCAGCTTAGCTGCCTTTCAATAAAATCACTGATCATGGCGATCGACATGCAGAGCAGTGTTGTGTACGTAGTTGCTCATCTGAATAAATAAAGGGGCTGAGCCTGAGCTGCTGCCTAGCTCGCACCAACAGAGTCCGGCCGGGAGGAGTTGTAGTTTCTGAAGGTGAGCTAGCTAGCTTTGGGATCGATGTATGGATCAGCAATGTAACAATGTGTTGTGGAAGCCCGTAGCTACTAACTAGCTCATTGGTGCATGAAATATATGTC ] [+] EMBL AU174453 [ TTTTGCTAACTATCCAGTACCAAGAACGGAGCTGCAAGGAAGAGACGTACGATGACCATGACGTCGACGACGACGAAGGCCATGGCGATGGCGGCGGCGGTCCTCGCCGCCGCCGCCGTCGCGGCGACGAACGCGCAGACGTGCGGGAAGCAGAACGACGGCATGATCTGCCCGCACAACCTGTGCTGCAGCCAGTTCGGGTACTGCGGCCTCGGCCGCGACTACTGCGGCACGGGGTGCCAGAGCGGCGCCTGCTGCTCCAGCCAGCGCTGCGGCAGCCAGGGCGGCGGCGCCACCTGCTCCAACAACCAGTGCTGCAGCCAGTACGGCTACTGCGGCTTCGGCTCCGAGTACTGCGGCTCCGGGTGCCAGAACGGGCCGTGCCGCGCC ] [+] EMBL OSLECTIN [ TGCTAACTATCCAGTACCAAGAACGGAGCTGCAAGGAAGAGACGTACGATGACCATGACGTCGACGACGACGAAGGCCATGGCGATGGCGGCGGCGGTCCTCGCCGCCGCCGCCGTCGCGGCGACGAACGCGCAGACGTGCGGGAAGCAGAACGACGGCATGATCTGCCCGCACAACCTGTGCTGCAGCCAGTTCGGGTACTGCGGCCTCGGCCGCGACTACTGCGGCACGGGGTGCCAGAGCGGCGCCTGCTGCTCCAGCCAGCGCTGCGGCAGCCAGGGCGGCGGCGCCACCTGCTCCAACAACCAGTGCTGCAGCCAGTACGGCTACTGCGGCTTCGGCTCCGAGTACTGCGGCTCCGGGTGCCAGAACGGGCCGTGCCGCGCCGACATCAAGTGCGGCCGCAACGCCAACGGCGAGCTCTGCCCCAACAACATGTGCTGCAGCCAGTGGGGATACTGCGGCCTCGGCAGCGAGTTCTGCGGCAACGGATGCCAGAGCGGCGCGTGCTGCCCGGAGAAGCGGTGCGGCAAGCAGGCCGGCGGGGACAAGTGCCCCAACAACTTCTGCTGCAGTGCCGGCGGCTACTGCGGCCTCGGCGGCAACTACTGCGGCTCCGGCTGCCAGAGCGGCGGCTGCTACAAGGGTGGCGACGGCATGGCGGCCATCCTGGCTAACAACCAGAGCGTCTCTTTCGAAGGGATCATCGAGTCAGTGGCTGAGCTTGTGTAGATCGATGAGTCGATCGTCGCCATGAGCGTTTTCTGCTTTGTATGCCTCTCGGCGTACAGGGCTTTTCAGCTTAGCTGCCTTTCAATAAAATCACTGATCATGGCGATCGACATGCAGAGCAGTGTTGTGTACGTAGTTGCTCATCTGAATAAATAAAGGGGCTGAGCCTGAGCTGCTGCCTAGCTCGCACCAACAGAGTCCGGCCGGGAGGAGTTGTAGTTTCTGAAGGTGAGCTAGCTAGCTTTGGGATCGATGTATGGATCAGCAATGTAACAATGTGTTGT ] [-] EMBL AU094599 [ GCGAGCTCTGCCCCAACAACATGTGCTGCAGCCAGTGGGGATACTGCGGCCTCGGCAGCGAGTTCTGCGGCAACGGATGCCAGAGCGGCGCGTGCTGCCCGGAGAAGCGGTGCGGCAAGCAGGCCGGCGGGGACAAGTGCCCCAACAACTTCTGCTGCAGTGCCGGCGGCTACTGCGGCCTCGGCGGCAACTACTGCGGCTCCGGCTGCCAGAGCGGCGGCTGCTACAAGGGTGGCGACGGCATGGCGGCCATCCTGGCTAACAACCAGAGCGTCTCTTTCGAAGGGATCATCGAGTCAGTGGCTGAGCTTGTGTAGATCGATGAGTCGATCGTCGCCATGAGCGTTTTCTGCTTTGTATGCCTCTCGGCGTACAGGGCTTTTCAGCTTAGCTGCCTTTCAATAAAATCACTGATCATGGCGATCGACATGCAGAGCAGTGTTGTGTACGTAGTTGCTCATCTGAATAAATAAAGGGGCTGAGCCTGAGCTGCTGCCTAGCTCGCACCAACAGAGTCCGGCCGGGAGGAGTTGTAGTTTCTGAAGGTGAGCT ] [+] EMBL AU164978 [ TGAATAAATAAAGGGGCTGAGCCTGAGCTGCTGCCTAGCTCGCACCAACAGAGTCCGGCCGGGAGGAGTTGTAGTTTCTGAAGGTGAGCTAGCTAGCTTTGGGATCGATGTATGGATCAGCAATGTAACAATGTGTTGTGGAAGCCCGTAGCTACTAACTAGCTCATTGGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_9557#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 387 fasta sequence [GCTAANAACCCAGAGCGTCTCTTTCGAAGGGATCATCGAGTCAAGTGGCTGAGCTTGTGTAGATCGATGAGTCGATCGTCGCNCATGAGCGTTTTCTGCTTTTGNTATCTCTCGNCCGTACAGGCTTTTCAGCTTAGCTGCCTTTCAATAAAATCACTGATCATGGCGATCGACATGCAGAGCAGTGTTGTGTACGTAGTTGCTCATCTGAATAAATAAAGGGCTGAGCCTGAGCTGCTGCCTAGCTCGCACCAACAGAGTCCGGCCGGGAGGAGTTGTAGTTTCTGAAGGTGAGCTAGCTAGCTTTGGGATCGATGTATGGATCAGCAATGTAACAATGTGTTGTGGAAGCCCGTAGCTACTAACTAGCTCATTNGGNTNGNCNAA] [-] EMBL OSC4361 [GCTAANAACCCAGAGCGTCTCTTTCGAAGGGATCATCGAGTCAAGTGGCTGAGCTTGTGTAGATCGATGAGTCGATCGTCGCNCATGAGCGTTTTCTGCTTTTGNTATCTCTCGNCCGTACAGGCTTTTCAGCTTAGCTGCCTTTCAATAAAATCACTGATCATGGCGATCGACATGCAGAGCAGTGTTGTGTACGTAGTTGCTCATCTGAATAAATAAAGGGCTGAGCCTGAGCTGCTGCCTAGCTCGCACCAACAGAGTCCGGCCGGGAGGAGTTGTAGTTTCTGAAGGTGAGCTAGCTAGCTTTGGGATCGATGTATGGATCAGCAATGTAACAATGTGTTGTGGAAGCCCGTAGCTACTAACTAGCTCATTNGGNTNGNCNAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9557#0 ATCGAGCTACATTTTGCTAACTATCCAGTACCAAGAACGGAGCTGCAAGGAAGAGACGTA 60 consensus_9557#1 ------------------------------------------------------------ consensus_9557#0 CGATGACCATGACGTCGACGACGACGAAGGCCATGGCGATGGCGGCGGCGGTCCTCGCCG 120 consensus_9557#1 ------------------------------------------------------------ consensus_9557#0 CCGCCGCCGTCGCGGCGACGAACGCGCAGACGTGCGGGAAGCAGAACGACGGCATGATCT 180 consensus_9557#1 ------------------------------------------------------------ consensus_9557#0 GCCCGCACAACCTGTGCTGCAGCCAGTTCGGGTACTGCGGCCTCGGCCGCGACTACTGCG 240 consensus_9557#1 ------------------------------------------------------------ consensus_9557#0 GCACGGGGTGCCAGAGCGGCGCCTGCTGCTCCAGCCAGCGCTGCGGCAGCCAGGGCGGCG 300 consensus_9557#1 ------------------------------------------------------------ consensus_9557#0 GCGCCACCTGCTCCAACAACCAGTGCTGCAGCCAGTACGGCTACTGCGGCTTCGGCTCCG 360 consensus_9557#1 ------------------------------------------------------------ consensus_9557#0 AGTACTGCGGCTCCGGGTGCCAGAACGGGCCGTGCCGCGCCGACATCAAGTGCGGCCGCA 420 consensus_9557#1 ------------------------------------------------------------ consensus_9557#0 ACGCCAACGGCGAGCTCTGCCCCAACAACATGTGCTGCAGCCAGTGGGGATACTGCGGCC 480 consensus_9557#1 ------------------------------------------------------------ consensus_9557#0 TCGGCAGCGAGTTCTGCGGCAACGGATGCCAGAGCGGCGCGTGCTGCCCGGAGAAGCGGT 540 consensus_9557#1 ------------------------------------------------------------ consensus_9557#0 GCGGCAAGCAGGCCGGCGGGGACAAGTGCCCCAACAACTTCTGCTGCAGTGCCGGCGGCT 600 consensus_9557#1 ------------------------------------------------------------ consensus_9557#0 ACTGCGGCCTCGGCGGCAACTACTGCGGCTCCGGCTGCCAGAGCGGCGGCTGCTACAAGG 660 consensus_9557#1 ------------------------------------------------------------ consensus_9557#0 GTGGCGACGGCATGGCGGCCATCCTGGCTAACAACC-AGAGCGTCTCTTTCGAAGGGATC 719 consensus_9557#1 --------------------------GCTAANAACCCAGAGCGTCTCTTTCGAAGGGATC 34 ***** **** *********************** consensus_9557#0 ATCGAGTCA-GTGGCTGAGCTTGTGTAGATCGATGAGTCGATCGTCGCC-ATGAGCGTTT 777 consensus_9557#1 ATCGAGTCAAGTGGCTGAGCTTGTGTAGATCGATGAGTCGATCGTCGCNCATGAGCGTTT 94 ********* ************************************** ********** consensus_9557#0 TCTGCTTTGTATGCCTCTCGGC-GTACAGGGCTTTTCAGCTTAGCTGCCTTTCAATAAAA 836 consensus_9557#1 TCTGCTTTTGNTATCTCTCGNCCGTACAGG-CTTTTCAGCTTAGCTGCCTTTCAATAAAA 153 ******** * ****** * ******* ***************************** consensus_9557#0 TCACTGATCATGGCGATCGACATGCAGAGCAGTGTTGTGTACGTAGTTGCTCATCTGAAT 896 consensus_9557#1 TCACTGATCATGGCGATCGACATGCAGAGCAGTGTTGTGTACGTAGTTGCTCATCTGAAT 213 ************************************************************ consensus_9557#0 AAATAAAGGGGCTGAGCCTGAGCTGCTGCCTAGCTCGCACCAACAGAGTCCGGCCGGGAG 956 consensus_9557#1 AAATAAAGGG-CTGAGCCTGAGCTGCTGCCTAGCTCGCACCAACAGAGTCCGGCCGGGAG 272 ********** ************************************************* consensus_9557#0 GAGTTGTAGTTTCTGAAGGTGAGCTAGCTAGCTTTGGGATCGATGTATGGATCAGCAATG 1016 consensus_9557#1 GAGTTGTAGTTTCTGAAGGTGAGCTAGCTAGCTTTGGGATCGATGTATGGATCAGCAATG 332 ************************************************************ consensus_9557#0 TAACAATGTGTTGTGGAAGCCCGTAGCTACTAACTAGCTCATTGGTGCATGAAATATATG 1076 consensus_9557#1 TAACAATGTGTTGTGGAAGCCCGTAGCTACTAACTAGCTCATTNGGNTNGNCNAA----- 387 ******************************************* * * consensus_9557#0 TCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1136 consensus_9557#1 ------------------------------------------------------------ consensus_9557#0 AAAAAAAAAAAAAAAAAAAA 1156 consensus_9557#1 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||