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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9561#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1024 fasta sequence
[TCTTCCCAAACCCTCCTCCTCTCACCGCCGACCTCGGCCCGCTCCTCGACCCCGCCGCGCCGGTCTCCGCCCTCGCCATCCACTCCCTCGGCCCCGTCCCGCGCAACCTCCTCGCCGCCTCCGACGACGGCCTCCTCCACCTCTACGACGCCGGCGAGGGGTTCCCGCTCCTCGCCTCGCTCCGCGTCTTCCCGCGCCACCGCGAGCCCGCCGACGCCTTCGCCGTGCACCCCACGGGGCGTGTCGCGCTCGCCGTCGGCCGCTCGGGGGGCCTCGCCATGCTCAACCTCCTCCGCGGCCGCCGCAGCTTCTCCTGCCGCCTCGAGCACCCGGCCACGGCGATCGCCTACGCCGAGGATGGCGCCGGTGGGGACCGCTTCGTGATGGCCGCCGAGGAGAAGGTGACCGTGCACGACTCCGAGGATGCTAGGATCATCCATGAGATCGACTGCGGCAAAAGGGTGCTCGCCTTTGCGCCTGCAAAGAAGGGAATACTTTACACTGGAGGAGAGGAACGCGGTATTACTGCTTGGGATCTTTCCAGTGGCAAGGTTACATCACGCATTGAGGATGCTCATTCAACTCGTGTGAAAGGGATTGTTGTCTTCGACGACAAGAACGATGGATCTGAACTGTGCAACCTAATTGCTTCGGCCTCATCAGATGGTATAATAAGGATCTGGGATGCTCGGATGATTGCAAAAGAGAAGACTACTCCATTAGCAGAGGCTAACACAAAAGCAAGGCTGACTTGTCTTGCGGGATCATCATTGAATTGAGCTAAGGAAAGCAGAAATGAAGCGGACGTGGAGCTAAATTGTTGAATTGAGGCCGTGGTACCAATTTTGTACTCTTTAGTTTTTAGTCTAGTCTCTATAACATATTTGTGTTGGAGAAACAAACCGAGGAGCTCGATGTATGGGACATGTATGATAGCCATAAGTTATGCATCACCATAGTCTGGCTTGAGGGCCTAAACTGCTTAATGTTTATGCAAGCGCATGGTTCTATTGTATCACCAGTT]
[+] EMBL AK107784 [TCTTCCCAAACCCTCCTCCTCTCACCGCCGACCTCGGCCCGCTCCTCGACCCCGCCGCGCCGGTCTCCGCCCTCGCCATCCACTCCCTCGGCCCCGTCCCGCGCAACCTCCTCGCCGCCTCCGACGACGGCCTCCTCCACCTCTACGACGCCGGCGAGGGGTTCCCGCTCCTCGCCTCGCTCCGCGTCTTCCCGCGCCACCGCGAGCCCGCCGACGCCTTCGCCGTGCACCCCACGGGGCGTGTCGCGCTCGCCGTCGGCCGCTCGGGGGGCCTCGCCATGCTCAACCTCCTCCGCGGCCGCCGCAGCTTCTCCTGCCGCCTCGAGCACCCGGCCACGGCGATCGCCTACGCCGAGGATGGCGCCGGTGGGGACCGCTTCGTGATGGCCGCCGAGGAGAAGGTGACCGTGCACGACTCCGAGGATGCTAGGATCATCCATGAGATCGACTGCGGCAAAAGGGTGCTCGCCTTTGCGCCTGCAAAGAAGGGAATACTTTACACTGGAGGAGAGGAACGCGGTATTACTGCTTGGGATCTTTCCAGTGGCAAGGTTACATCACGCATTGAGGATGCTCATTCAACTCGTGTGAAAGGGATTGTTGTCTTCGACGACAAGAACGATGGATCTGAACTGTGCAACCTAATTGCTTCGGCCTCATCAGATGGTATAATAAGGATCTGGGATGCTCGGATGATTGCAAAAGAGAAGACTACTCCATTAGCAGAGGCTAACACAAAAGCAAGGCTGACTTGTCTTGCGGGATCATCATTGAATTGAGCTAAGGAAAGCAGAAATGAAGCGGACGTGGAGCTAAATTGTTGAATTGAGGCCGTGGTACCAATTTTGTACTCTTTAGTTTTTAGTCTAGTCTCTATAACATATTTGTGTTGGAGAAACAAACCGAGGAGCTCGATGTATGGGACATGTATGATAGCCATAAGTTATGCATCACCATAGTCTGGCTTGAGGGCCTAAACTGCTTAATGTTTATGCAAGCGCATGGTTCTATTGTATCACCAGT ]
[-] EMBL CB660663 [ CACGGCGATCGCCTACGCCGAGGATGGCGCCGGTGGGGACCGCTTCGTGATGGCCGCCGAGGAGAAGGTGACCGTGCACGACTCCGAGGATGCTAGGATCATCCATGAGATCGACTGCGGCAAAAGGGTGCTCGCCTTTGCGCCTGCAAAGAAGGGAATACTTTACACTGGAGGAGAGGAACGCGGTATTACTGCTTGGGATCTTTCCAGTGGCAAGGTTACATCACGCATTGAGGATGCTCATTCAACTCGTGTGAAAGGGATTGTTGTCTTCGACGACAAGAACGATGGATCTGAACTGTGCAACCTAATTGCTTCGGCCTCATCAGATGGTATAATAAGGATCTGGGATGCTCGGATGATTGCAAAAGAGAAGACTACTCCATTAGCAGAGGCTAACACAAAAGCAAGGCTGACTTGTCTTGCGGGATCATCATTGAATTGAGCTAAGGAAAGCAGAAATGAAGCGGACGTGGAGCTAAATTGTTGAATTGAGGCCGTGGTACCAATTTTGTACTCTTTAGTTTTTAGTCTAGTCTCTATAACATATTTGTGTTGGAGAAACAAACCGAGGAGCTCGATGTATGGGACATGTATGATAGCCATAAGTTATGCATCACCATAGTCTGGCTTGAGGGCCTAAACTGCTTAATGTTTATGGAAGCGCATGG ]
[+] EMBL CA764196 [ TGCACGATTCCGAGGATGCGAGGATCATCCATGAGATCGATTGCGGCAAAAGGGTGCTCGCCTTCGCGCCTGCAAAGAAGGGAATACTTTACACTGGAGGAGAGGAACGCGGTATTACTGCTTGGGATCTTTCCAGTGGCAAGGTTAAATCACGCATTGAGGATGCTCATTCAACTCGTGTGAAAGGGATTGTTGTCTTCGACGACAAGAACGATGGATCTGAACTGTGCAACCTAATTGCTTCAGCCTCATCAGATGGTATAATAAGGATCTGGGATGCTCGGATGATTGCAAAAGAGAAGCCTACTCCATTAGCAGAGGCTAAGACAAAAGCAAGGCTGACTTGTCTTGCGGGATCATCATTGAATTGAGCT GGAAAGCAGAAGTGAAGCGGATGTGGAGCTAAA TTGAAGTGAGGCCGTGGTACCAATTTTGTGATCTTTAGTTTTTAGTCTAGTCCCTATAACATATTTGTGTTGGAGAAACAAACCGAGGAACTCGATGTATGGGAAGTGTATGATAGCCATAAGTTATACATCACCATAGTCTGGCTTGAGGCCCTAAACTGCTTAATGTTTATGCAAGCGCATGGTTCTATTGTATCACCAGTT]
consensusID : consensus_9561#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence
[CGGAAACCCTAGCCCTCGCGCCGCTCTTCTCCTACCCGGCCCACGCGGGGCCCATCCGCTGCGCCGCCGCGGCGGCGCGCGCGGGGCTCGCGGCGTCGGGCGGCTCCGACGACACCGTCCGCCTCTACGACCTCCCCGCCGCCGCCGACCTCGGCCCGCTCCTCGACCCCGCCGCGCCGGTCTCCGCCCTCGCCATCCACTCCCTCGGCCCCGTCCCGCGCAACCTCCTCGCCGCCTCCGACGACGGCCTCCTCCACCTCTACGACGCCGGCGAGGGGTTCCCGCTCCTCGCCTCGCTCCGCGTCTTCCCGCGCCACCGCGAGCCCGCCGACGCCCTCGCCGTGCACCCCACGGGGCGTGTCGCGCTCGCCGTCGGCCGCTCGGGGGGCCTCGCCATGCTCAACCTCCTCCGCGGCCGCCGCAGCTTCTCCTGCCGCCTCGAGCACCCGGCCACGGCGATCGCCTACGCCGAGGATGGCGCCGGTGGGGACCGCTTCGTGATGGCCGCCGAGGAGAAGGTGACCGTGCACGACTCCGAGGATGCTAGGATCATCCATGAGATCGACTGCGGCAAAAGGGTGCTCGCCTTTGCGCCTGCAAAGAAGGGAATACTTTACACTGGAGGAGAGGAACGCGGTATTACTGCTTGGGATCTTTCCAGTGGCAAGGTTACATCACGCATTGAGGAT]
[+] EMBL CB660662 [CGGAAACCCTAGCCCTCGCGCCGCTCTTCTCCTACCCGGCCCACGCGGGGCCCATCCGCTGCGCCGCCGCGGCGGCGCGCGCGGGGCTCGCGGCGTCGGGCGGCTCCGACGACACCGTCCGCCTCTACGACCTCCCCGCCGCCGCCGACCTCGGCCCGCTCCTCGACCCCGCCGCGCCGGTCTCCGCCCTCGCCATCCACTCCCTCGGCCCCGTCCCGCGCAACCTCCTCGCCGCCTCCGACGACGGCCTCCTCCACCTCTACGACGCCGGCGAGGGGTTCCCGCTCCTCGCCTCGCTCCGCGTCTTCCCGCGCCACCGCGAGCCCGCCGACGCCCTCGCCGTGCACCCCACGGGGCGTGTCGCGCTCGCCGTCGGCCGCTCGGGGGGCCTCGCCATGCTCAACCTCCTCCGCGGCCGCCGCAGCTTCTCCTGCCGCCTCGAGCACCCGGCCACGGCGATCGCCTACGCCGAGGATGGCGCCGGTGGGGACCGCTTCGTGATGGCCGCCGAGGAGAAGGTGACCGTGCACGACTCCGAGGATGCTAGGATCATCCATGAGATCGACTGCGGCAAAAGGGTGCTCGCCTTTGCGCCTGCAAAGAAGGGAATACTTTACACTGGAGGAGAGGAACGCGGTATTACTGCTTGGGATCTTTCCAGTGGCAAGGTTACATCACGCATTGAGGAT]
consensusID : consensus_9561#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 315 fasta sequence
[TGAATTGAGCTAAGGAAAGCAGAAATGAAGCGGACGTGGAGCTAAATTGTTGAATTGAGGCCGTGGTACCAATTTTGTACTCTTTAGTTTTTAGTCTAGTCTCTATAACATATTTGTGTTGGAGAAACAAACCGAGGAGCTCGATGTATGGGACATGTATGATAGCCATAAGTTATGCATCACCATAGTCTGGCTTGAGGGCCTAAACTGCTTAATGTTTATGCAAGCGCATGGTTCTATTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAA]
[+] EMBL AU095405 [TGAATTGAGCTAAGGAAAGCAGAAATGAAGCGGACGTGGAGCTAAATTGTTGAATTGAGGCCGTGGTACCAATTTTGTACTCTTTAGTTTTTAGTCTAGTCTCTATAACATATTTGTGTTGGAGAAACAAACCGAGGAGCTCGATGTATGGGACATGTATGATAGCCATAAGTTATGCATCACCATAGTCTGGCTTGAGGGCCTAAACTGCTTAATGTTTATGCAAGCGCATGGTTCTATTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAA]
[+] EMBL AU095408 [TGAATTGAGCTAAGGAAAGCAGAAATGAAGCGGACGTGGAGCTAAATTGTTGAATTGAGGCCGTGGTACCAATTTTGTACTCTTTAGTTTTTAGTCTAGTCTCTATAACATATTTGTGTTGGAGAAACAAACCGAGGAGCTCGATGTATGGGACATGTATGATAGCCATAAGTTATGCATCACCATAGTCTGGCTTGAGGGCCTAAACTGCTTAATGTTTATGCAAGCGCATGGTTCTATTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9561#0 ------------------------------------------------------------
consensus_9561#1 CGGAAACCCTAGCCCTCGCGCCGCTCTTCTCCTACCCGGCCCACGCGGGGCCCATCCGCT 60
consensus_9561#2 ------------------------------------------------------------
consensus_9561#0 ---------------------------------------------------------TCT 3
consensus_9561#1 GCGCCGCCGCGGCGGCGCGCGCGGGGCTCGCGGCGTCGGGCGGCTCCGACGACACCGTCC 120
consensus_9561#2 ------------------------------------------------------------
consensus_9561#0 TCCCAAACCCTCCTCCTCTCACCGCCGACCTCGGCCCGCTCCTCGACCCCGCCGCGCCGG 63
consensus_9561#1 GCCTCTACGACCTCCCCGCCGCCGCCGACCTCGGCCCGCTCCTCGACCCCGCCGCGCCGG 180
consensus_9561#2 ------------------------------------------------------------
consensus_9561#0 TCTCCGCCCTCGCCATCCACTCCCTCGGCCCCGTCCCGCGCAACCTCCTCGCCGCCTCCG 123
consensus_9561#1 TCTCCGCCCTCGCCATCCACTCCCTCGGCCCCGTCCCGCGCAACCTCCTCGCCGCCTCCG 240
consensus_9561#2 ------------------------------------------------------------
consensus_9561#0 ACGACGGCCTCCTCCACCTCTACGACGCCGGCGAGGGGTTCCCGCTCCTCGCCTCGCTCC 183
consensus_9561#1 ACGACGGCCTCCTCCACCTCTACGACGCCGGCGAGGGGTTCCCGCTCCTCGCCTCGCTCC 300
consensus_9561#2 ------------------------------------------------------------
consensus_9561#0 GCGTCTTCCCGCGCCACCGCGAGCCCGCCGACGCCTTCGCCGTGCACCCCACGGGGCGTG 243
consensus_9561#1 GCGTCTTCCCGCGCCACCGCGAGCCCGCCGACGCCCTCGCCGTGCACCCCACGGGGCGTG 360
consensus_9561#2 ------------------------------TGAATTGAGCTAAGGAAAGCA-GAAATGAA 29
** * * ** * *
consensus_9561#0 TCGCGCTCGCCGTCGGCCGCTCGGGGGGCCTCGCCATGCTCAACCTCCTCCGCGGCCGCC 303
consensus_9561#1 TCGCGCTCGCCGTCGGCCGCTCGGGGGGCCTCGCCATGCTCAACCTCCTCCGCGGCCGCC 420
consensus_9561#2 GCGGACGTGGAGCTAAATTGTTGAATTGA--GGCCGTGGT--ACCAATTTTGTA--CTCT 83
** * * * * * * *** ** * *** * * * *
consensus_9561#0 GCAGCTTCTCCTGCCGCCTCGAGCACCCGGCCACGGCGATCGCCTACGCCGAGGATGGCG 363
consensus_9561#1 GCAGCTTCTCCTGCCGCCTCGAGCACCCGGCCACGGCGATCGCCTACGCCGAGGATGGCG 480
consensus_9561#2 TTAGTTTTTAGTCTAGTCTCTATAACATATTTGTGTTGGAGAAACAAACCGAGGAGCTCG 143
** ** * * * *** * ** * * * ******* **
consensus_9561#0 CCGGTGGGGACCGCTTCGTGATGGCCGCCGAGGAGAAGGTGACCGTGCACGACTCCGAGG 423
consensus_9561#1 CCGGTGGGGACCGCTTCGTGATGGCCGCCGAGGAGAAGGTGACCGTGCACGACTCCGAGG 540
consensus_9561#2 ATGTATGGGAC--ATGTATGATAGCCAT-AAGTTATGCATCACCATAGTCTGGCTTGAGG 200
* ***** * **** *** ** * *** * * ****
consensus_9561#0 ATGCTAGGATCATCCATGAGATCGACTGCGGCAAAAGGGTGCTCGCCTTTGCGCCTGCAA 483
consensus_9561#1 ATGCTAGGATCATCCATGAGATCGACTGCGGCAAAAGGGTGCTCGCCTTTGCGCCTGCAA 600
consensus_9561#2 GC-CTAAACTGCTTAATG-------TTTATGCAAGCGCATGGTT-CTATTGTAAAAAAAA 251
*** * * *** * **** * ** * * *** **
consensus_9561#0 AGAAGGGAATACTTTACACTGGAGGAGAGGAACGCGGTATTACTGCTTGGGATCTTTCCA 543
consensus_9561#1 AGAAGGGAATACTTTACACTGGAGGAGAGGAACGCGGTATTACTGCTTGGGATCTTTCCA 660
consensus_9561#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-----AA 306
* ** ** * * * * * * ** * * * *
consensus_9561#0 GTGGCAAGGTTACATCACGCATTGAGGATGCTCATTCAACTCGTGTGAAAGGGATTGTTG 603
consensus_9561#1 GTGGCAAGGTTACATCACGCATTGAGGAT------------------------------- 689
consensus_9561#2 AAAANAAAA--------------------------------------------------- 315
**
consensus_9561#0 TCTTCGACGACAAGAACGATGGATCTGAACTGTGCAACCTAATTGCTTCGGCCTCATCAG 663
consensus_9561#1 ------------------------------------------------------------
consensus_9561#2 ------------------------------------------------------------
consensus_9561#0 ATGGTATAATAAGGATCTGGGATGCTCGGATGATTGCAAAAGAGAAGACTACTCCATTAG 723
consensus_9561#1 ------------------------------------------------------------
consensus_9561#2 ------------------------------------------------------------
consensus_9561#0 CAGAGGCTAACACAAAAGCAAGGCTGACTTGTCTTGCGGGATCATCATTGAATTGAGCTA 783
consensus_9561#1 ------------------------------------------------------------
consensus_9561#2 ------------------------------------------------------------
consensus_9561#0 AGGAAAGCAGAAATGAAGCGGACGTGGAGCTAAATTGTTGAATTGAGGCCGTGGTACCAA 843
consensus_9561#1 ------------------------------------------------------------
consensus_9561#2 ------------------------------------------------------------
consensus_9561#0 TTTTGTACTCTTTAGTTTTTAGTCTAGTCTCTATAACATATTTGTGTTGGAGAAACAAAC 903
consensus_9561#1 ------------------------------------------------------------
consensus_9561#2 ------------------------------------------------------------
consensus_9561#0 CGAGGAGCTCGATGTATGGGACATGTATGATAGCCATAAGTTATGCATCACCATAGTCTG 963
consensus_9561#1 ------------------------------------------------------------
consensus_9561#2 ------------------------------------------------------------
consensus_9561#0 GCTTGAGGGCCTAAACTGCTTAATGTTTATGCAAGCGCATGGTTCTATTGTATCACCAGT 1023
consensus_9561#1 ------------------------------------------------------------
consensus_9561#2 ------------------------------------------------------------
consensus_9561#0 T 1024
consensus_9561#1 -
consensus_9561#2 -
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||