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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9562#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1140 fasta sequence
[CTGCGGCGCACGCAGGCGGCGAATCCTCCTCCGTCGACGCGACTCCTCCTCCGCCGCCCGCCGCTCATCTCATCCCACTATGGCAGCCAATGTTGGGGAATCCACAAGTGGCAGCAGCAGCGGCGGTGCCGATTCTGGGGGAAGCTTCGAGTGCAACATATGCTTTGAGCTTCCGCAGGAGCCTATTGTCACGCTCTGTGGCCACCTCTTCTGCTGGCCATGCCTCTACAAGTGGCTGCACATCCACTCGCATTCACCTGAGTGCCCGGTCTGCAAGGCTGTTGTCGAGGAGGATAAGCTTGTCCCCCTCTATGGCCGTGGTAAGGACCGTGTTGACCCAAGGTCAAAGAACGTCCCTGGGGCTGACATTCCTAATCGCCCAGCTGGACAGAGGCCTGCCACGGCTCCGCAGGCCAATCCTAACACCCACTTCCCCAATGCCAACCCCAACCCTTGGTTCATGGGTGGAGGCATCCCACTAGCCAATGCACGGTGGGGGAATTACACCTTCTCGGCGGCATTTGGGGG-TTTGTTCCCCCTGCTCAGCTTCCAAGTCCATGGGTTCCCAGATGCAACCGCCTATGGGCAGCCTGCTGGTTTTCCCTACGGATATGGACACGGCCACGGTCACGGTCATGGGCACGCGTTCCACGGCGGACATGCCCATGCTGCTGCTGCTCCCCGCCATGGACCGCCTGGGCAACAACAGCAGGCGGATGTGTACCTGAAGGCGCTTCTCATCCTGGTTGGTTTTCTTGTGATTGCAAGCCTCATCACATTCTAGGATTGTGCCATCATATTGCTGTGCTTGTAATAAGAGGAATGATTTCCCGAGTTGCTTTCTGATGTTGTGCATTACCTTGCCTCCACACACGACCCAGTCTGAATCAAGTGGTTCTTTTGCGCAAAGTGTTGATAGAATTCTTGTATATACGAAATAGATGTGGTCGTGTGGAGCATATGTGTACTGTGGTTCATGAATAACATGGAAGCTCTGTCTGAATGAACTAGAGCAATGATACTTATATTGTGTTTTTGATATGATGATGCTCAGAATGAGCAGGCTATGCAATTGTTTGGAGCACAAATGTATTCCTCTATGGTTTGTACTAAAGACTATCGCACTGATATCATATCTGT]
[+] EMBL AK099519 [CTGCGGCGCACGCAGGCGGCGAATCCTCCTCCGTCGACGCGACTCCTCCTCCGCCGCCCGCCGCTCATCTCATCCCACTATGGCAGCCAATGTTGGGGAATCCACAAGTGGCAGCAGCAGCGGCGGTGCCGATTCTGGGGGAAGCTTCGAGTGCAACATATGCTTTGAGCTTCCGCAGGAGCCTATTGTCACGCTCTGTGGCCACCTCTTCTGCTGGCCATGCCTCTACAAGTGGCTGCACATCCACTCGCATTCACCTGAGTGCCCGGTCTGCAAGGCTGTTGTCGAGGAGGATAAGCTTGTCCCCCTCTATGGCCGTGGTAAGGACCGTGTTGACCCAAGGTCAAAGAACGTCCCTGGGGCTGACATTCCTAATCGCCCAGCTGGACAGAGGCCTGCCACGGCTCCGCAGGCCAATCCTAACACCCACTTCCCCAATGCCAACCCCAACCCTTGGTTCATGGGTGGAGGCATCCCACTAGCCAATGCACGGTGGGGGAATTACACCTTCTCGGCGGCATTTGGGGG TTTGTTCCCCCTGCTCAGCTTCCAAGTCCATGGGTTCCCAGATGCAACCGCCTATGGGCAGCCTGCTGGTTTTCCCTACGGATATGGACACGGCCACGGTCACGGTCATGGGCACGCGTTCCACGGCGGACATGCCCATGCTGCTGCTGCTCCCCGCCATGGACCGCCTGGGCAACAACAGCAGGCGGATGTGTACCTGAAGGCGCTTCTCATCCTGGTTGGTTTTCTTGTGATTGCAAGCCTCATCACATTCTAGGATTGTGCCATCATATTGCTGTGCTTGTAATAAGAGGAATGATTTCCCGAGTTGCTTTCTGATGTTGTGCATTACCTTGCCTCCACACACGACCCAGTCTGAATCAAGTGGTTCTTTTGCGCAAAGTGTTGATAGAATTCTTGTATATACGAAATAGATGTGGTCGTGTGGAGCATATGTGTACTGTGGTTCATGAATAACATGGAAGCTCTGTCTGAATGAACTAGAGCAATGATACTTATATTGTGTTTTTGATATGATGATGCTCAGAATGAGCAGGCTATGCAAT ]
[+] EMBL AK062128 [ CGGCGCACGCAGGCGGCGAATCCTCCTCCGTCGACGCGACTCCTCCTCCGCCGCCCGCCGCTCATCTCATCCCACTATGGCAGCCAATGTTGGGGAATCCACAAGTGGCAGCAGCAGCGGCGGTGCCGATTCTGGGGGAAGCTTCGAGTGCAACATATGCTTTGAGCTTCCGCAGGAGCCTATTGTCACGCTCTGTGGCCACCTCTTCTGCTGGCCATGCCTCTACAAGTGGCTGCACATCCACTCGCATTCACCTGAGTGCCCGGTCTGCAAGGCTGTTGTCGAGGAGGATAAGCTTGTCCCCCTCTATGGCCGTGGTAAGGACCGTGTTGACCCAAGGTCAAAGAACGTCCCTGGGGCTGACATTCCTAATCGCCCAGCTGGACAGAGGCCTGCCACGGCTCCGCAGGCCAATCCTAACACCCACTTCCCCAATGCCAACCCCAACCCTTGGTTCATGGGTGGAGGCATCCCACTAGCCAATGCACGGTGGGGGAATTACACCTTCTCGGCGGCATTTGGGGG TTTGTTCCCCCTGCTCAGCTTCCAAGTCCATGGGTTCCCAGATGCAACCGCCTATGGGCAGCCTGCTGGTTTTCCCTACGGATATGGACACGGCCACGGTCACGGTCATGGGCACGCGTTCCACGGCGGACATGCCCATGCTGCTGCTGCTCCCCGCCATGGACCGCCTGGGCAACAACAGCAGGCGGATGTGTACCTGAAGGCGCTTCTCATCCTGGTTGGTTTTCTTGTGATTGCAAGCCTCATCACATTCTAGGATTGTGCCATCATATTGCTGTGCTTGTAATAAGAGGAATGATTTCCCGAGTTGCTTTCTGATGTTGTGCATTACCTTGCCTCCACACACGACCCAGTCTGAATCAAGTGGTTCTTTTGCGCAAAGTGTTGATAGAATTCTTGTATATACGAAATAGATGTGGTCGTGTGGAGCATATGTGTACTGTGGTTCATGAATAACATGGAAGCTCTGTCTGAATGAACTAGAGCAATGATACTTATATTGTGTTTTTGATATGATGATGCTCAGAATGAGCAGGCTATGCAATTGTTTGGAGCACAAATGTATTCCTCTATGGTTTGTACTAAAGACTATCGCACTGATATCATATCTGT]
[+] EMBL CF293625 [ CGCACGCAGGCGGCGAATCCTCCTCCGTCGACGCGACTCCTCCTCCGCCGCCCGCCGCTCATCTCATCCCACTATGGCAGCCAATGTTGGGGAATCCACAAGTGGCAGCAGCAGCGGCGGTGCCGATTCTGGGGGAAGCTTCGAGTGCAACATATGCTTTGAGCTTCCGCAGGAGCCTATTGTCACGCTCTGTGGCCACCTCTTCTGCTGGCCATGCCTCTACAAGTGGCTGCACATCCACTCGCATTCACCTGAGTGCCCGGTCTGCAAGGCTGTTGTCGAGGAGGATAAGCTTGTCCCCCTCTATGGCCGTGGTAAGGACCGTGTTGACCCAAGGTCAAAGAACGTCCCTGGGGCTGACATTCCTAATCGCCCAGCTGGACAGAGGCCTGCCACGGCTCCGCAGGCCAATCCTAACACCCACTTCCCCAATGCCAACCCCAACCCTTGGTTCATGGGTGGAGGCATCCCACTAGCCAATGCACGGTGGGGGAATTACACCTTCTCGGCGG ATTTGGGGGTTTTGTTCCCCCTGCTCAGCTTCCAAGTCCATGGGTTCCCAGATGCAACCGCCTATGGGCAGCCTGCTGGTTTCCCCTACG ]
[-] EMBL CF293626 [ CTGCTGCTGCTCCCCGCCATGGACCGCTTGGGCAACAACAGCAGGCGGATGTGTACCTGAAGGCGCTTCTCATCCTGGTTGGTTTTCTTGTGATTGCAAGCCTCATCACATTCTAGGATTGTGCCATCATATTGCTGTGCTTGTAATAAGAGGAATGATTTCCCGAGTCGCTTTCTGATGTTGTGCATTACCTTGCCTCCACACACGACCCAGTTTGAATCAAGTGGTTCTTTTGCGCAAAGTGTTGATAGAATTCTTGTATATACGAAATAGATGTGGTCGTGTGGAGCATATGTGTACTGTGGTTCATGAATAACATGGAAGCTCTGTCTGAATGAACTAGAGCAAaaaaaa ]
[+] EMBL CF316521 [ TCTTGTATATACGAAATAGATGTGGTCGTGTGGAGCATATGTGTACTGTGGTTCATGAATAACATGGAAGCTCTGTCTGAATGAACTAGAGCAATGATACTTATATTGTGTTTTTGATATGATGATGCTCAGAATGAGCAGGCTATGCAATTGTTTGGAGCCCAt ]
consensusID : consensus_9562#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 183 fasta sequence
[ACGAGACAAGGGGGTGTTGATAGAATTCTTGTATATACGAAATAGATGTGGTCGTGTGGAGCATATGTGTACTGTGGTTCATGAGTAACATGGAAGCTCTGTCTGAATGAACTAGAGCAATGATACTTATATTGTGTTTTTGATATGATGATGCTCAGAATGAGCAGGCTATGCAATTGTTTG]
[+] EMBL CA764079 [ACGAGACAAGGGGGTGTTGATAGAATTCTTGTATATACGAAATAGATGTGGTCGTGTGGAGCATATGTGTACTGTGGTTCATGAGTAACATGGAAGCTCTGTCTGAATGAACTAGAGCAATGATACTTATATTGTGTTTTTGATATGATGATGCTCAGAATGAGCAGGCTATGCAATTGTTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9562#0 CTGCGGCGCACGCAGGCGGCGAATCCTCCTCCGTCGACGCGACTCCTCCTCCGCCGCCCG 60
consensus_9562#1 ------------------------------------------------------------
consensus_9562#0 CCGCTCATCTCATCCCACTATGGCAGCCAATGTTGGGGAATCCACAAGTGGCAGCAGCAG 120
consensus_9562#1 ------------------------------------------------------------
consensus_9562#0 CGGCGGTGCCGATTCTGGGGGAAGCTTCGAGTGCAACATATGCTTTGAGCTTCCGCAGGA 180
consensus_9562#1 ------------------------------------------------------------
consensus_9562#0 GCCTATTGTCACGCTCTGTGGCCACCTCTTCTGCTGGCCATGCCTCTACAAGTGGCTGCA 240
consensus_9562#1 ------------------------------------------------------------
consensus_9562#0 CATCCACTCGCATTCACCTGAGTGCCCGGTCTGCAAGGCTGTTGTCGAGGAGGATAAGCT 300
consensus_9562#1 ------------------------------------------------------------
consensus_9562#0 TGTCCCCCTCTATGGCCGTGGTAAGGACCGTGTTGACCCAAGGTCAAAGAACGTCCCTGG 360
consensus_9562#1 ------------------------------------------------------------
consensus_9562#0 GGCTGACATTCCTAATCGCCCAGCTGGACAGAGGCCTGCCACGGCTCCGCAGGCCAATCC 420
consensus_9562#1 ------------------------------------------------------------
consensus_9562#0 TAACACCCACTTCCCCAATGCCAACCCCAACCCTTGGTTCATGGGTGGAGGCATCCCACT 480
consensus_9562#1 ------------------------------------------------------------
consensus_9562#0 AGCCAATGCACGGTGGGGGAATTACACCTTCTCGGCGGCATTTGGGGGTTTGTTCCCCCT 540
consensus_9562#1 ------------------------------------------------------------
consensus_9562#0 GCTCAGCTTCCAAGTCCATGGGTTCCCAGATGCAACCGCCTATGGGCAGCCTGCTGGTTT 600
consensus_9562#1 ------------------------------------------------------------
consensus_9562#0 TCCCTACGGATATGGACACGGCCACGGTCACGGTCATGGGCACGCGTTCCACGGCGGACA 660
consensus_9562#1 ------------------------------------------------------------
consensus_9562#0 TGCCCATGCTGCTGCTGCTCCCCGCCATGGACCGCCTGGGCAACAACAGCAGGCGGATGT 720
consensus_9562#1 ------------------------------------------------------------
consensus_9562#0 GTACCTGAAGGCGCTTCTCATCCTGGTTGGTTTTCTTGTGATTGCAAGCCTCATCACATT 780
consensus_9562#1 ------------------------------------------------------------
consensus_9562#0 CTAGGATTGTGCCATCATATTGCTGTGCTTGTAATAAGAGGAATGATTTCCCGAGTTGCT 840
consensus_9562#1 ------------------------------------------------------------
consensus_9562#0 TTCTGATGTTGTGCATTACCTTGCCTCCACACACGACCCAGTCTGAATCAAGTGGTTCTT 900
consensus_9562#1 --------------------------------------------------------ACGA 4
*
consensus_9562#0 TTGCGCAAAGTGTTGATAGAATTCTTGTATATACGAAATAGATGTGGTCGTGTGGAGCAT 960
consensus_9562#1 GACAAGGGGGTGTTGATAGAATTCTTGTATATACGAAATAGATGTGGTCGTGTGGAGCAT 64
***************************************************
consensus_9562#0 ATGTGTACTGTGGTTCATGAATAACATGGAAGCTCTGTCTGAATGAACTAGAGCAATGAT 1020
consensus_9562#1 ATGTGTACTGTGGTTCATGAGTAACATGGAAGCTCTGTCTGAATGAACTAGAGCAATGAT 124
******************** ***************************************
consensus_9562#0 ACTTATATTGTGTTTTTGATATGATGATGCTCAGAATGAGCAGGCTATGCAATTGTTTGG 1080
consensus_9562#1 ACTTATATTGTGTTTTTGATATGATGATGCTCAGAATGAGCAGGCTATGCAATTGTTTG- 183
***********************************************************
consensus_9562#0 AGCACAAATGTATTCCTCTATGGTTTGTACTAAAGACTATCGCACTGATATCATATCTGT 1140
consensus_9562#1 ------------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||