These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9565#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 787 fasta sequence [CCTTTTTTTTTTTTTTTAAATCGGGGAAAAAAACACATCACAATTATTACCGAGCACCTCTATGTACATTGTACAGGATGGGTTCCGTTTCCATATGGACATAACTCTCCATTGAAGGAAAACCTCAATCTACAGTTGCCCTAAAAAAGGTCGAAAGAAAGGGAAACATCTCAAAGACCGCCAGATCCGCATAAATAAACAGCTTCAAAGAC-TGACAAACTCTGCA-CCCTAACGCATAAAACCGGTTACAGTAGGGCGGCTAAGCCAAGCGAACAACACAGCAGCAAACATAAACATT-TGTGCCTCTGATATGTGCAAGCTAACGGCTGGAAATCTGGAATCCCCTTGCTGCCCTTTGGGTCCTGTCCAGATTTCTTAATCTGCGTACCTGCTCTGGTGCATAATTTTATTCTGCACTTGTGGTATTCCACCTGCTGATGAGATTGCCAGGTGCATTGCTCTCTCATGGTTTTGGTAAGCTTTGGTGCCAACCAAAACGGGTTTTCATGGCATGACAGGATGACTGGTTCATACTTGGTGCTCGGGCCCAACATTTGTCAGTTCAGCTACTACAAACAACCGAGCATCCCGTCTAGCTGAAAAGTTAATCTGAAAGATATTGCCATCCCAGTAACAGTAAAATCATTATGGCCTTGCAGGACACAACCGAGCTTTCCCAGGGTTGAGCAGTGATTCTGACATTATCCAACCCTGTTCTCTAGCTTTCTTCTTGAAAGTTCCATAAGAGGAAGAAACAATTTTGCAGGACTCAGCTATGTGTGCCATG] [+] EMBL CB658390 [CCTTTTTTTTTTTTTTTAAATCGGGGAAAAAAACACATCACAATTATTACCGAGCACCTCTATGTACATTGTACAGGATGGGTTCCGTTTCCATATGGACATAACTCTCCATTGAAGGAAAACCTCAATCTACAGTTGCCCTAAAAAAGGTCAAAAGAAAGGGAAACATCTCAAAGACCGCCAGATCCGCATAAATAAACAGCTTCAAAGAC TGACAAACTCTGCA CCCTAACGCATAAAACCGGTTACAGTAGGGCGGCTAAGCCAAGCGAACAACACAGCAGCAAACATAAACATT TGTGCCTCTGATATGGGCAAGCTAACGGCTGGAAATCTGGAATCCCCTTGCTGCCCTTTGGGTCCTGTCCAGATTTCTTAATCTGCGTACCTGCTCTGGTGCATAATTTTATTCTGCACTTGGGGTATTCCACCTGCTGATGAGATTGCCAGGTGCATTGCTCTCTCATGGTTTTGGTAAGCTTTGGTGCCAACCAAAACGGGTTTTCATGGCATGACAGGATGACTGGTTCATACTTGGTGCTCGGGCCCAACATTTGTCAGTTCAGCTACTACAAACAACCGAGCATCCCGTCTAGCTGAAAAGTTAATCTGAAAGATATTGCCATCCCAGTAACAGTAAAATCATTATGGCCTTGCAGGACACAACCGAGCTTTCCCAGGGTTGAGCAGTGATTCTGACATTATCCAACCCTGTTCTCTAGCTTTCTTCTTGAAAGTTCCATAAGAGGAAGAAACAATTTTGCAGGACTCAGCTATGTGTGCCATG] [-] EMBL BI807443 [ TTTTTT TCCGGGAAAAAAACACATCACAATTATTACCGAGCACCTCTATGTACA TGTACAGGATGGGTTCCG TTCCATATGGACATAACTCTCCATTGAAGGAAAACCTCAATCTACAGTTGCCCTAAGAAAGGTCGAAAGAAAGGGAAACATCTCAAAGACCGCCAGATCCGCATAAATAAACAGCTTCAAAGAC TGACAAACTCTGCA CCCTAACGCATAAAACCGGTTACAGTAGGGCGGCTAAGCCAAGCGAACAACACAGCAGCAAACATAAACATTGTGTGCCTCTGATATGTGCAAGCTAACGGCTGGAAATCTGGAATCCCCTTGCTGCCCTTGGGGTCCTGTCCAGATTTCTTAATCTG GTACCTGCTCTGGTGCATAATTTTATTCTGCACTTGTGGTATTCCACCTGCTGATGAGATTGCCAGGTGCATTG TCTCTCATGG TTTGGTAAGC TTGGTGCCAACCAAAA GGGTTTTCATGG ATGACAGGATGACTGGTTCATACTT ] [-] EMBL AU096544 [ ttanTTTTT TCGGGGAAAAAAACACATCACAATTATTACCGAGCACCTCTATGTACATTGTACAGGATGGGTTCCGTTTCCATATGGACATAACTCTCCATTGAAGGAAAACCTCAATCTACAGTTGCCCTAAGAAAGGTCGAAAGAAAGGGAAACATCTCAAAGACCGCCAGATCCGCATAAATAAACAGCTTCAAAGAC TGACAAACTCTGCA CCCTAACGCATAAAACCGGTTACAGTAGGGCGGCTAAGCCAAGCGAACAACACAGCAGCAAACATAAACATT TGTGCCTCTGATATGTGCAAGCTAACGGCTGGAAATCTGGAATCCCCTTGCTGCCCTTTGGGTCCTGTCCAGATTTCTTAATCTGCGTACCTGCTCTGGTGCATAATTTTATTCTGCACTTGTGGTATTCCACCTGCTGATGAGATTGCCAGGTGCATTGCTCTCTCATNGTTTTGGTAAGCTTTGGTGCCAACCAAAACGGGTTTTCATGGCATGACAGGATGACTGGTTCATACTTGGNGCTCGGGCCCAACATTTGTCAGTTCAGCTACTACAAACAACCG ] [+] EMBL CB685119 [ AAATGGGGGAAAAAAACACATCACAATTATTACCGAGCACCTCTATGTACATTGTACAGGATGGGTTCCGTTTCCATATGGACATAACTCTCCATTGAAGGAAAACCTCAATCTACAGTTGCCCTAAAAAAGGTCAAAAAAAAGGGAAACATCTCAAAGACCGCCAAATCCGCATAAATAAACAGCTTCAAAAAC TGACAAACTCTGCA CCCTAACGCATAAAACCGGTTACAGTAGGGCGGCTAAGCCAAGCGAACAACACAGCAGCAAACATAAACATT TGTGCCTCTGATATGTGCAAGCTAACGGCTGGAAATCTGGAATCCCCTTGCTGCCCTTTGGGTCCTGTCCAAATTTCTTAATCTGCGTACCTGCTCTGGGGCATAATTTTATTCTGCACTTGGGGTATTCCACCTGCTGATGAAATTGCCAGGGGCATTGCTCTCTCATGGTTTTGGAAAGCTTTGGTGCCAACCAAAACGGGTTTTCATGGCATGACAGGATGACTGGTTCATACTTGGTGCTCGGGCCCAACATTTGTCAGTTCAGCTACTACAAACAACCGAGCATCCCGTCTAGCTGAAAAGTTAGTCTGAAAAATATTGCCATCCCAGTAACAGTAAAATCATTATGGCCTTGCAGGACACAACCGAGCTTTCCCAGGGTTGAGCAGTGATTCTGACA ] [-] EMBL OSS14167A [ ctAAGAAGGTCGAAAGAAA GGAAACATCTCAAAGACCGCNAGATCCGCATAANTAAACAGCTTCAAAGACTTGACAAACTCTGCACCCCTAACGCATAAAACCGGTTACAGTAGGGCGGCTAAGCCAAGCGAACAACACAGCAGCAAACATAAACATT TGTGCCTCTGATATGTGCAAGCTAACGGCTGGAAATCTGGAATCCCCTTGCTGCCCTTTGGGTCCTGTCCAGATTTCTTAATCTGCGTACCTGCTCTGGTGCATAATTTTATTCTGCACTTGTGGTATTCCACCTGCTGATGAGATTGCCAGGTGCATTGCTCTCTCATGGTTTTGGTAAGCTTTGGTGCCAACCAAAACGGGTTTTCATGGCATGACAGGATGACTGGTTCATACTTGGTGCTCGGGCCCAACATTTGTCAGTTCAGCTACTACAAACAACCGA ] consensusID : consensus_9565#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 377 fasta sequence [GCCGCTGCAATGTTCTTCGAGAACATTCTTAAATCGGGGAAAAAAACACATCACAATTAATTTAACCGAAGCCACCTCTATGTTACATTTGGTACAGGGAATGGGTTTCCCGTTTCCATTATTGGACATAACTCTCCATTGAAGGAAAACCTCAATCTACAGTTGCCCTAAGAAAGGTCGAAAGAAAGGGAAACATCTCAAAGACCGCCAGATCCGCATAAATAAACAGCTTCAAAGACTGACAAACTCTGCACCCTAACGCATAAAACCGGTTACAGTAGGGCGGCTAAGCCAAGCGAACAACACAGCAGCAAACATAAACATTTGTGCCTCTGATATGTGCAAGCTAACGGCTGGAAATCTGGAATCCCCTTGCT] [+] EMBL AU225674 [GCCGCTGCAATGTTCTTCGAGAACATTCTTAAATCGGGGAAAAAAACACATCACAATTAATTTAACCGAAGCCACCTCTATGTTACATTTGGTACAGGGAATGGGTTTCCCGTTTCCATTATTGGACATAACTCTCCATTGAAGGAAAACCTCAATCTACAGTTGCCCTAAGAAAGGTCGAAAGAAAGGGAAACATCTCAAAGACCGCCAGATCCGCATAAATAAACAGCTTCAAAGACTGACAAACTCTGCACCCTAACGCATAAAACCGGTTACAGTAGGGCGGCTAAGCCAAGCGAACAACACAGCAGCAAACATAAACATTTGTGCCTCTGATATGTGCAAGCTAACGGCTGGAAATCTGGAATCCCCTTGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9565#0 -------------CCTTTTTTTTTTTTTTTAAATCGGGGAAAAAAACACATCACAATTAT 47 consensus_9565#1 GCCGCTGCAATGTTCTTCGAGAACATTCTTAAATCGGGGAAAAAAACACATCACAATTAA 60 *** ** ******************************* consensus_9565#0 T---ACCGAG--CACCTCTATGT-ACATT--GTACAGG--ATGGGTT--CCGTTTCCATA 95 consensus_9565#1 TTTAACCGAAGCCACCTCTATGTTACATTTGGTACAGGGAATGGGTTTCCCGTTTCCATT 120 * ***** *********** ***** ******* ******* ********** consensus_9565#0 --TGGACATAACTCTCCATTGAAGGAAAACCTCAATCTACAGTTGCCCTAAAAAAGGTCG 153 consensus_9565#1 ATTGGACATAACTCTCCATTGAAGGAAAACCTCAATCTACAGTTGCCCTAAGAAAGGTCG 180 ************************************************* ******** consensus_9565#0 AAAGAAAGGGAAACATCTCAAAGACCGCCAGATCCGCATAAATAAACAGCTTCAAAGACT 213 consensus_9565#1 AAAGAAAGGGAAACATCTCAAAGACCGCCAGATCCGCATAAATAAACAGCTTCAAAGACT 240 ************************************************************ consensus_9565#0 GACAAACTCTGCACCCTAACGCATAAAACCGGTTACAGTAGGGCGGCTAAGCCAAGCGAA 273 consensus_9565#1 GACAAACTCTGCACCCTAACGCATAAAACCGGTTACAGTAGGGCGGCTAAGCCAAGCGAA 300 ************************************************************ consensus_9565#0 CAACACAGCAGCAAACATAAACATTTGTGCCTCTGATATGTGCAAGCTAACGGCTGGAAA 333 consensus_9565#1 CAACACAGCAGCAAACATAAACATTTGTGCCTCTGATATGTGCAAGCTAACGGCTGGAAA 360 ************************************************************ consensus_9565#0 TCTGGAATCCCCTTGCTGCCCTTTGGGTCCTGTCCAGATTTCTTAATCTGCGTACCTGCT 393 consensus_9565#1 TCTGGAATCCCCTTGCT------------------------------------------- 377 ***************** consensus_9565#0 CTGGTGCATAATTTTATTCTGCACTTGTGGTATTCCACCTGCTGATGAGATTGCCAGGTG 453 consensus_9565#1 ------------------------------------------------------------ consensus_9565#0 CATTGCTCTCTCATGGTTTTGGTAAGCTTTGGTGCCAACCAAAACGGGTTTTCATGGCAT 513 consensus_9565#1 ------------------------------------------------------------ consensus_9565#0 GACAGGATGACTGGTTCATACTTGGTGCTCGGGCCCAACATTTGTCAGTTCAGCTACTAC 573 consensus_9565#1 ------------------------------------------------------------ consensus_9565#0 AAACAACCGAGCATCCCGTCTAGCTGAAAAGTTAATCTGAAAGATATTGCCATCCCAGTA 633 consensus_9565#1 ------------------------------------------------------------ consensus_9565#0 ACAGTAAAATCATTATGGCCTTGCAGGACACAACCGAGCTTTCCCAGGGTTGAGCAGTGA 693 consensus_9565#1 ------------------------------------------------------------ consensus_9565#0 TTCTGACATTATCCAACCCTGTTCTCTAGCTTTCTTCTTGAAAGTTCCATAAGAGGAAGA 753 consensus_9565#1 ------------------------------------------------------------ consensus_9565#0 AACAATTTTGCAGGACTCAGCTATGTGTGCCATG 787 consensus_9565#1 ---------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||