These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9577#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 936 fasta sequence [GGGCTGGAGGAATTCGGCACGAGTATAAATCCCACACGCGTCCTCCTCCTCCTAATAAACTCCTCCAATTCCTCGACGAATCAGTTTTCTCCTCTGATTTTCCACCACAAGATCTCTAGTTTCTTTGATTTCTTGATCAGACGACGATGGGAGGGAGCAAGGATGAGCAGCAAGACAGGGGGCTCTTCTCCAACCTGATGCACGGCGTCGCCGGCG-GCGGCGGCGGCCA-TGGCTATCCGTACCCTCCTCAGCAGGGGTACTACCCGCCGCCGCCCACCGCGTATCCTCCTCCTCCTCCGGCGGGGTACGGCGGCGGCT-ATGGCTA-CCCTCC-TGCAGG-TTACCCC--GGCTCGTCC-GCGCCATT-CCAACACGGTAACCATGGCGGAGGAAACATGGGGATGCTAGCTGCAGGTGCAGCCGCTGCCGCGGCGGCGTAC-GGCGCGC-AC-AAGCTTTCCCACGGTCATGGCCATG-GAGGCTACGGCTACGG-TGGCCACCACGGCGGCCTCTTCGGCGGTCACCATGGCCACCACGGCGGCTTGTTTGGAGGCCATCACGGACACCACGGCGGCGGCCTCTTCGGCGGCCACCACGGCCACCATGGCGGCTTGTTTGGCGGTCACCACGGCTTCGGTGGCCACCACGGACACCATGGCCACCATTGATGGTGATCACCATATCGTGTTGCACGGCGTGTTCAATCAGTGCGAGTGATAAGATGATCATGAGTTGGTTTGATTATACTACTATAAACTCGATATGTGTATATAGTTTTTTCTACTTAGTTTGCTACTCTAGATTGTATCTGAGACACTGATATGAGTGATAATATGGTTTGATGATTAGTAACCGACTGTCAATCAGTGTTTGATCCCTGTTTTTACTGTGCTGATACCCCCACGTTTTTTATCGGAGAGTGGGTTCTAATTTCTTGAAGGAATG] [+] EMBL BE039188 [GGGCTGGAGGAATTCGGCACGAGTATAAATCCCACACGCGTCCTCCTCCTCCTAATAAACTCCTCCAATTCCTCGACGAATCAGTTTTCTCCTCTGATTTTCCACCACAAGATCTCTAGTTTCTTTGATTTCTTGATCAGACGACGATGGGAGGGAGCAAGGATGAGCAGCAAGACAGGGGGCTCTTCTCCAACCTGATGCACGGCGTCGCCGGCG GCGGCGGCGGCCA TGGCTATCCGTACCCTCCTCAGCAGGGGTACTACCCGCCGCCGCCCACCGCGTATCCTCCTCCTCCTCCGGCGGGGTACGGCGGCGGCT ATGGCTA CCCTCC TGCAGG TTACCCC GGCTCGTCC GCGCCATT CCAACACGGTAACCATGGCGGAGGAAACATGGGGATGCTAGCTGCAGGTGCAGCCGCTGCCGCGGCGGCGTAC GGCGCGC AC AAGCTTTCCCACGGTCATGGCCATG GAGGCTACGGCTACGG TGGGCACCACGGCGGGCTCTTCGGCGGTCACCATGGCCACCACGGCGGCTTGTTTGGAGGCCATC ] [+] EMBL AK067943 [ CCTCTGATTTTCCACCACAAGATCTCTAGTTTCTTTGATTTCTTGATCAGACGACGATGGGAGGGAGCAAGGATGAGCAGCAAGACAGGGGGCTCTTCTCCAACCTGATGCACGGCGTCGCCGGCG GCGGCGGCGGCCA TGGCTATCCGTACCCTCCTCAGCAGGGGTACTACCCGCCGCCGCCCACCGCGTATCCTCCTCCTCCTCCGGCGGGGTACGGCGGCGGCT ATGGCTA CCCTCC TGCAGG TTACCCC GGCTCGTCC GCGCCATT CCAACACGGTAACCATGGCGGAGGAAACATGGGGATGCTAGCTGCAGGTGCAGCCGCTGCCGCGGCGGCGTAC GGCGCGC AC AAGCTTTCCCACGGTCATGGCCATG GAGGCTACGGCTACGG TGGCCACCACGGCGGCCTCTTCGGCGGTCACCATGGCCACCACGGCGGCTTGTTTGGAGGCCATCACGGACACCACGGCGGCGGCCTCTTCGGCGGCCACCACGGCCACCATGGCGGCTTGTTTGGCGGTCACCACGGCTTCGGTGGCCACCACGGACACCATGGCCACCATTGATGGTGATCACCATATCGTGTTGCACGGCGTGTTCAATCAGTGCGAGTGATAAGATGATCATGAGTTGGTTTGATTATACTACTATAAACTCGATATGTGTATATAGTTTTTTCTACTTAGTTTGCTACTCTAGATTGTATCTGAGACACTGATATGAGTGATAATATGGTTTGATGATTAGTAACCGACTGTCAATCAGTGTTTGATCCCTGTTTTTACTGTGCTGATACCCCCACGTTTTTTATCGGAGAGTGGGTTCTAATTTCTTGAAGGAATG] [+] EMBL C27893 [ TAGTTTCTTTGATTTCTTGATCAGACGACGATGGGAGGGAGCAAGGATGAGCAGCAAGACAGGGGGCTCTTCTCCAACCTGATGCACGGCGTCGC GCGNGC GCGGCGCNCATTGGCTATCCGTACCCTCCTCAGCAGGGGTACTACCCGCCGCCGCCCACCGCGTATCCTCCTCCTCCTCCGGCGGGGTACGGCGGCGGCT ATGGCTA CCCTCC TGCAGG TTACCCC GGCTCGTCC GCGCCATT CCAACACGGTAACCATGGCGGAGGAAACATGGGGATGCTAGCTGCAGGTGCAGCNGCTGCCGCGGCGG TTACNGGCG GCAACAAAGCTTTCCCACGGTCATGGCCATG GAGGCTACGGCTACGGTTAGCCAACACGGCNGCCTCTTCGGCGGT AACATTGGCAACACGGCNGCTTTTTTTGAGGCataag ] [+] EMBL AU100898 [ gncCGGCCG GGCTAATGGCTACCCCTCCTTGCAGGTTTACCCCCGGGTTCGTCCGGCGCCATTCCCAACACGGTACCCATGGCGAAGAAAACATGGGAATGCTAGCTGCAGGTGCAGCCGCTNCCGCGNCGGCGTAC GGCGCGC AC AAGCTTTCCCACGGTCATGGCCATGNAAGGCTACGGNTACGG TGGCCACCACGGCGGCCTCTTCGGCGGTCACCATGGCCACCACGGCGGCTTGTTTGGAGGCCATCACGGACACCACGGCGGCGGCCTCTTCGGCGGCCACCACGGCCACCATGGCGGCTTGTTTGGCGGTCACCACGGCTTCGGTGGCCACCACGGACACCATGGCCACCATTGATGGTGATCACCATATCGTGTTGCACGGCGTGTTCAATCAGTGCGAGTGATAAGATGATCATGAGTTGGTTTGATTATACTACTATAAACTCGATATGTGTATATAGTTTTTTCTACTTAGTTTGCTACTCTAGATTGTATCTGAGACACTGATATGAGTGATAATATGGTTTGATGATTAGTAACCGACTGTCAATCAGTGTTTGATCCCTGTTTTTACTGTGCTGATACCCCCACGTTTTTaaaaaaa ] consensusID : consensus_9577#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 349 fasta sequence [TTTTACTATTCTAATCAGCAACTCCAACCGATCCACTAATTACACGTCAGCTTGCTTAGCCGCGTCGCGCTGCTCTGCTTGATCATCATCACCTTCTCCGATCGATCCTCCTCGACGCCGCCCACAAATATAAATCCCACACGCGTCCTCCTCCTCCTAATAAACTCCTCCAATTCCTCGACGAATCAGTTTTCTCCTCTGATTTTCCACCACAAGATCTCTAGTTTCTTTGATTTCTTGATCAGACGNCGATGGGAGGGAGGCAAGGATGAGGCAGCAAGACAGGGGGTCTTTCTTCCAACCTGATGCACGGCGTCGCNCGCGGGGGCGGGCGGGCCATGGNTATTCC] [+] EMBL OSC209 [TTTTACTATTCTAATCAGCAACTCCAACCGATCCACTAATTACACGTCAGCTTGCTTAGCCGCGTCGCGCTGCTCTGCTTGATCATCATCACCTTCTCCGATCGATCCTCCTCGACGCCGCCCACAAATATAAATCCCACACGCGTCCTCCTCCTCCTAATAAACTCCTCCAATTCCTCGACGAATCAGTTTTCTCCTCTGATTTTCCACCACAAGATCTCTAGTTTCTTTGATTTCTTGATCAGACGNCGATGGGAGGGAGGCAAGGATGAGGCAGCAAGACAGGGGGTCTTTCTTCCAACCTGATGCACGGCGTCGCNCGCGGGGGCGGGCGGGCCATGGNTATTCC] consensusID : consensus_9577#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 195 fasta sequence [TGATGGTGATCACCATATCGTGTTGCACGGCGTGTTCACATCAGTGCGAGTGATAAGATGATCATGAGTTGGTTTGATTATACTACTATAAACCTCGATATGTGTATATAGTTTTTTCTACTTAGTTTGCTACTCTAGATTGTATCTGAGACACTGATATGAGTGATAATATGGTTTGATGATTTAAAAAAAAAA] [+] EMBL BM037970 [TGATGGTGATCACCATATCGTGTTGCACGGCGTGTTCACATCAGTGCGAGTGATAAGATGATCATGAGTTGGTTTGATTATACTACTATAAACCTCGATATGTGTATATAGTTTTTTCTACTTAGTTTGCTACTCTAGATTGTATCTGAGACACTGATATGAGTGATAATATGGTTTGATGATTTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9577#0 GGGCTGGAGGAATTCGGCACGAGTATAAATCCCACACGCGTCCTCCTCCTCCTAATAAAC 60 consensus_9577#2 ------------------------------------------------------------ consensus_9577#1 ------------------------------------------------------------ consensus_9577#0 TCCTCCAATTCCTCGACGAATCAGTTTTCTCCTCTGATTTTCCACCACAAGATCTCTAGT 120 consensus_9577#2 ------------------------------------------------------------ consensus_9577#1 ------------------------------------------------------------ consensus_9577#0 TTCTTTGATTTCTTGATCAGACGACGATGGGAGGGAGCAAGGATGAGCAGCAAGACAGGG 180 consensus_9577#2 ------------------------------------------------------------ consensus_9577#1 ------------------------------------------------------------ consensus_9577#0 GGCTCTTCTCCAACCTGATGCACGGCGTCGCCGGCGGCGGCGGCGGCCATGGCTATCCGT 240 consensus_9577#2 ------------------------------------------------------------ consensus_9577#1 ------------------------------------------------------------ consensus_9577#0 ACCCTCCTCAGCAGGGGTACTACCCGCCGCCGCCCACCGCGTATCCTCCTCCTCCTCCGG 300 consensus_9577#2 ------------------------------------------------------------ consensus_9577#1 ------------------------------------------------------------ consensus_9577#0 CGGGGTACGGCGGCGGCTATGGCTACCCTCCTGCAGGTTACCCCGGCTCGTCCGCGCCAT 360 consensus_9577#2 ------------------------------------------------------------ consensus_9577#1 ------------------------------------------------------------ consensus_9577#0 TCCAACACGGTAACCATGGCGGAGGAAACATGGGGATGCTAGCTGCAGGTGCAGCCGCTG 420 consensus_9577#2 ------------------------------------------------------------ consensus_9577#1 ------------------------------------------------------------ consensus_9577#0 CCGCGGCGGCGTACGGCGCGCACAAGCTTTCCCACGGTCATGGCCATGGAGGCTACGGCT 480 consensus_9577#2 ------------------------------------------------------------ consensus_9577#1 ------------------------------------------------------------ consensus_9577#0 ACGGTGGCCACCACGGCGGCCTCTTCGGCGGTCACCATGGCCACCACGGCGGCTTGTTTG 540 consensus_9577#2 ------------------------------------------------------------ consensus_9577#1 ------------------------------------------------------------ consensus_9577#0 GAGGCCATCACGGACACCACGGCGGCGGCCTCTTCGGCGGCCACCACGGCCACCATGGCG 600 consensus_9577#2 ------------------------------------------------------------ consensus_9577#1 ------------------------------------------------------------ consensus_9577#0 GCTTGTTTGGCGGTCACCACGGCTTCGGTGGCCACCACGGACACCATGGCCACCATTGAT 660 consensus_9577#2 --------------------------------------------------------TGAT 4 consensus_9577#1 ----------TTTTACTATTCTAATCAGCAACTCCAACCGATCCACTAATTACACGTCAG 50 * * consensus_9577#0 GGTGATCA-CCATATCGTGTTGCACGGCGTGTTCA--ATCAG----TGCGAGTGAT---- 709 consensus_9577#2 GGTGATCA-CCATATCGTGTTGCACGGCGTGTTCAC-ATCAG----TGCGAGTGAT---- 54 consensus_9577#1 CTTGCTTAGCCGCGTCGCGCTGCTCTGCTTGATCATCATCACCTTCTCCGATCGATCCTC 110 ** * * ** *** * *** * ** ** *** **** * *** *** consensus_9577#0 ----AAGATGATCATGAGT-TGGTTTGATTATAC-TACTATAAAC-TCGATATGTGTATA 762 consensus_9577#2 ----AAGATGATCATGAGT-TGGTTTGATTATAC-TACTATAAACCTCGATATGTGTATA 108 consensus_9577#1 CTCGACGCCGCCCACAAATATAAATCCCACACGCGTCCTCCTCCTCCTAATAAACTCCTC 170 * * * ** * * * * * * * ** *** * consensus_9577#0 TAGTTTTTT--CTACTTAGTTTGCTACTCTAGATTGTATCTGAGACA---CTGATATGAG 817 consensus_9577#2 TAGTTTTTT--CTACTTAGTTTGCTACTCTAGATTGTATCTGAGACA---CTGATATGAG 163 consensus_9577#1 CAATTCCTCGACGAATCAGTTTTCTCCTCTGATTTTCCACCACAAGATCTCTAGTTTCTT 230 * ** * * * * ***** ** **** ** * * * ** * * consensus_9577#0 TGATAATATGGTTTGATGATTAGTAACCGACTGTCAATCAGTGTTTGATCCCTGTTTTTA 877 consensus_9577#2 TGATAATATGGTTTGATGATTTAAAAAAAAAA---------------------------- 195 consensus_9577#1 TGATTTCTTGATCAGACGNCGATGGGAGGGAGGCAAGGATGAGGCAGCAAGACAGGGGGT 290 **** ** * ** * consensus_9577#0 CTGTGCTGATACCCCCACGTTTTTTATCGGAGAGTGGGTTCTAATTTCTTGAAGGAATG 936 consensus_9577#2 ----------------------------------------------------------- consensus_9577#1 CTTTCTTCCAACCTGATGCACGGCGTCGCNCGCGGGGGCGGGCGGGCCATGGNTATTCC 349 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||