cluster # 9584

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Oryza sativa
cluster # 9584 cluster # 9584 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9584#0 length = 780 sequences # 4

consensus_9584#1 length = 758 sequences # 1
consensus_9584#2 length = 536 sequences # 1

consensusID : consensus_9584#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 780
fasta sequence

                              [GGAACTCTTACATCAAGAAGAAGCTTCGCCAGCGCGGCATCGATCCGGCCACCCACAAGCCGCTCAAGTGGTCCGATTACGTGTTCGACGGCTACAACCACCAGCTACCTCCGTACAA-CCATGG-CGGCATCTATGGCGGCGGCGACAG--AAGGACA-CGGCGGTGCACTTCGACG-NCCACGCCC-TCGG-CAACTGGTGCTAGCAGCTACCCCTCCGTAAAAAAAAAAAACAATTCTAGCTACAAACCTGGACATATGCGTGTCTAGATT-CATAGCTAAAGTTTGTTTTTTTATGGGACAGAGTAGTACCATCTAGCTAAGCTCGAATCCACCCCAAATTAGGCGCAACGAGACCGACGGCGAGCGATGAGCCATAGCAATGAT-CAGCCGATCAATTAGTAGGCGCCATAATTGCATG-CAAGCATGCTGCTACGNATAAATGTACGTATACTACGGGTCCAAGTTTTCCAACGTGTATACGCGCGTGTGAATTAATTAAGTCGGCGCGTACGTAATTAAGATCATAGCTGATGTTTGGTGAGAGGTTTTTGGGTTGTCAAAAGATTTTTTTTTTTTTTGGTTTAGTTTCTTTCATTTCTCTTCTCTCCTTTGATCGATCGATCGAGAGATATCGATGGATCGGGCATTAGTTTGCTGCTTTTGAGTGACATGATTGTGATGATAATTAAAGTCTTTAATCTCGATCGCCGGTACACGTACAACATGTAAAGTTCTTCATATGATGATATATATAAATATATATATAGACATTGATGCTAAAAAA]

[+] EMBL AU101387             [GGAACTCTTACATCAAGAAGAAGCTTCGCCAGCGCGGCATCGATCCGGCCACCCACAAGCCGCTCAAGTGGTCCGATTACGTGTTCGACGGCTACAACCACCAGCTACCTCCGTACAA CCATGG CGGCATCTATGGCGGCGGCGACAG  AAGGACA CGGCGGTGCACTTCGACG NCCACGNCC TCGG CAACTGGTGCTAGCAGCTACCCCTCCGTAAAAAAAAAAAACAATTCTAGCTACAAACCTGGACATATGCGTGTCTAGATT CATAGCTAAAGTTTGTTTTTTTATGGGACAGAGTAGTACCATCTAGCTAAGCTCGAATCCACCCCAAATTAGGCGCAACGAGACCGACGNCGAGCGATGAGCCATAGCAATGAT CAGCCGATCAATTAGTAGGCGCCATAATTTCATG CAAGCATGCTGCTACGNATAAATGTACGna                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL C73778               [GGAACTCTTACATCAAGAAGAAGCTTCGCCAGCGCGGCATCGATCCGGCCACCCACAAGCCGCTCAAGTGGTCCGATTACGTGTTCGACGGCTACAACCACCAGCTACCTCCGTACAA CCATGG CGGCATCTATGGCGGCGGCGACAN  AAGGACA CGGCGGTGCACTTCGACG NCCACGGCC TCGG CAACTGGTGCTAGCAGCTACCCCTCCGTAAAAAAAAAAAACAATTCTAGCTACAAACCTGGNCATATGCGTGTCTAGATT CATAGCTAAAGTTTGTTTTTTTATGGGACAGAGTAGTACCATCTAGCTAAGCTCGAATCCACCCCAAATTAGGCGCAACGNGACCGACGGCGAGCGATGAGCCATAGCAATGAT CAGCCGATCAATTAGTAGGCGNCATAATTGCATG CAAGCATGCTGCTACGNt                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL C99577               [                                                                                                       gtacCCCCCTTACAC CCNTGGCCGGCATCTTTGGCCNCCGCGACAGCCAAGGACACCGGCGTTGCAC TCGACG CCCACGCCC TCGGCCAACTGGTGCTAGCAGCTACCCCTCCGTAAAAAAAAAAANC ATTCTAGCTACAAACCTGGACATNTGCGTGTCTAGATTCCATAGCTAAAGTTTGTTTTTTTATGGGACAGAGTAGTACCATCTAGCTAAGCTCGAATCCACCCCAAATTAGGCGCAACGAGACCGACGGCGAGCGATGAGCCATAGCAATGATCCAGCCGATCAATTAGTAGGCGCCATAATTGCATGCCAAGCATGCTGCTACGTATAAATGTACGTATACTACGGGTCCAAGTTTTCCAACGTGTATACGCGCGTGTGAATTAATTAAGTCGGCGCGTACGTAATTAAGATCATAGCTGATGTTTGGTGAGAGGTTTTTGGGTTGTCAAAAGATTTTTTTTTTTTTTGGTTTAGTTTCTTTCATTTCTCTTCTCTCCTTTGATCGATCGATCGAGAGATATCGATGGATCGGGCATTAGTTTGCTGCTTTTGAGTGACATGATTGTGATGATAATTAAAGTCTTTAATCTCGATCGCCGGTACACGTACAACATGTAAAGTTCTTCATATGATGATATATATAAATATATATATAGACATTGATGCTAAAAAA]
[+] EMBL C99637               [                                                                                                            CTCCGTACAACCCATGG CGGCATCTATGGCGGCGGCGACAGC AAGGACA CGGCGGTGCACTTCGACGCCCCACGCCCNTCGG CAACTGGTGCTAGCAGCTACCCCTCCGTAAAAAAAAAAAACAATTCTAGCTACAAACCTGGACATATGCGTGTCTAGATT CATAGCTAAAGTTTGTTTTTTTATGGGACAGAGTAGTACCATCTAGCTAAGCTCGAATCCACCCCAAATTAGGCGCAACGAGACCGACGGCGAGCGATGAGCCATAGCAATGAT CAGCCGATCAATTAGTAGGCGCCATAATTGCATG CAAGCATGCTGCTACGTATAAATGTACGTATACTACGGGT CAAGTTTT CAACGTGTATACGCGCGTGTGAATTAATTAAGTCGGCGCGTACGTAATTAAGATCATAGCTGATGTTTGGTGAGAGGTTTTTGGGTTGTCAAAAGATTTTTTTTTTTTTTGGTTTAGTTTCTTTCATTTCTCTTCTCTCCTTTGATCGATCGATCGAGAGATATCGATGGATCGGGCATTAGTTTGCTGCTTTTGAGTGACATGATTGTGATGATAATTAAAGTCTTTAATNTNGATCGCCGGTACACGTACAACATGTAAAGTTCTTCATATGATGATATATATAAATATATATATAGANATTGANGNTAA    ]




>consensus_9584#0
GGAACTCTTACATCAAGAAGAAGCTTCGCCAGCGCGGCATCGATCCGGCCACCCACAAGC
CGCTCAAGTGGTCCGATTACGTGTTCGACGGCTACAACCACCAGCTACCTCCGTACAACC
ATGGCGGCATCTATGGCGGCGGCGACAGAAGGACACGGCGGTGCACTTCGACGNCCACGC
CCTCGGCAACTGGTGCTAGCAGCTACCCCTCCGTAAAAAAAAAAAACAATTCTAGCTACA
AACCTGGACATATGCGTGTCTAGATTCATAGCTAAAGTTTGTTTTTTTATGGGACAGAGT
AGTACCATCTAGCTAAGCTCGAATCCACCCCAAATTAGGCGCAACGAGACCGACGGCGAG
CGATGAGCCATAGCAATGATCAGCCGATCAATTAGTAGGCGCCATAATTGCATGCAAGCA
TGCTGCTACGNATAAATGTACGTATACTACGGGTCCAAGTTTTCCAACGTGTATACGCGC
GTGTGAATTAATTAAGTCGGCGCGTACGTAATTAAGATCATAGCTGATGTTTGGTGAGAG
GTTTTTGGGTTGTCAAAAGATTTTTTTTTTTTTTGGTTTAGTTTCTTTCATTTCTCTTCT
CTCCTTTGATCGATCGATCGAGAGATATCGATGGATCGGGCATTAGTTTGCTGCTTTTGA
GTGACATGATTGTGATGATAATTAAAGTCTTTAATCTCGATCGCCGGTACACGTACAACA
TGTAAAGTTCTTCATATGATGATATATATAAATATATATATAGACATTGATGCTAAAAAA

consensusID : consensus_9584#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 758
fasta sequence

                              [AGCTCCTTCTTTCGTCTTCGTCTTCGCCATCGTCGTCGGGACATCGCCGGCGGTTTGGTTTGTTCTCTCTCGGTCGTCGTCGGCGGCAATTGCGACATTGAGCACGGTGGTGGTGGTGGCCATCTATGGCGAAGCGGGCGGGCGGCGCGAGGAAGAAGCTGAGGAGAGGGCTGTGGTCGCCGGAGGAGGACGAGAAGCTGATGAACCACATTGCCAAGTATGGCCATGGCTGCTGGAGCTCCGTCCCCAAGCTTGCAGGCCTTGAGAGATGTGGGAAGAGCTGCAGGCTGAGGTGGATAAACTACCTCAGGCCAGACCTCAAGAGGGGAGCATTCTCACAGGAAGAAGAAGACCTCATCATCCATCTCCATTCCATGCTAGGAAACAAGTGGTCTCAGATTGCGGCTCAGCTGCCGGGTCGGACGGACAACGAGGTCAAGAACTTCTGGAACTCTTACATCAAGAAGAAGCTTCGCCAGCGCGGCATCGATCCGGCCACCCACAAGCCGCTCGCCGAGGTCGTCGCCGCCGCCGCCTGCGCCCGCACGCCGGCGGTGTTCAGCGACGCCGAGCTCATCCTGTCCTCCATCGGCGCCCAGCCGCCGCCGGAGAGCTATGATGGCAGCCGGTACAGCACNGGAGTGCGGCGCCGCGAGTGTCGGCGGCGACGGGTCGCTGTCGTCGCTGTCCGGGTACAGCCAAGCGACAGCGGAGTTCGCGGTGGACGGCGCCAGCGCGAGCGCGCTGCTGCACTGCGG]

[+] EMBL CB643957             [AGCTCCTTCTTTCGTCTTCGTCTTCGCCATCGTCGTCGGGACATCGCCGGCGGTTTGGTTTGTTCTCTCTCGGTCGTCGTCGGCGGCAATTGCGACATTGAGCACGGTGGTGGTGGTGGCCATCTATGGCGAAGCGGGCGGGCGGCGCGAGGAAGAAGCTGAGGAGAGGGCTGTGGTCGCCGGAGGAGGACGAGAAGCTGATGAACCACATTGCCAAGTATGGCCATGGCTGCTGGAGCTCCGTCCCCAAGCTTGCAGGCCTTGAGAGATGTGGGAAGAGCTGCAGGCTGAGGTGGATAAACTACCTCAGGCCAGACCTCAAGAGGGGAGCATTCTCACAGGAAGAAGAAGACCTCATCATCCATCTCCATTCCATGCTAGGAAACAAGTGGTCTCAGATTGCGGCTCAGCTGCCGGGTCGGACGGACAACGAGGTCAAGAACTTCTGGAACTCTTACATCAAGAAGAAGCTTCGCCAGCGCGGCATCGATCCGGCCACCCACAAGCCGCTCGCCGAGGTCGTCGCCGCCGCCGCCTGCGCCCGCACGCCGGCGGTGTTCAGCGACGCCGAGCTCATCCTGTCCTCCATCGGCGCCCAGCCGCCGCCGGAGAGCTATGATGGCAGCCGGTACAGCACNGGAGTGCGGCGCCGCGAGTGTCGGCGGCGACGGGTCGCTGTCGTCGCTGTCCGGGTACAGCCAAGCGACAGCGGAGTTCGCGGTGGACGGCGCCAGCGCGAGCGCGCTGCTGCACTGCGG]




>consensus_9584#1
AGCTCCTTCTTTCGTCTTCGTCTTCGCCATCGTCGTCGGGACATCGCCGGCGGTTTGGTT
TGTTCTCTCTCGGTCGTCGTCGGCGGCAATTGCGACATTGAGCACGGTGGTGGTGGTGGC
CATCTATGGCGAAGCGGGCGGGCGGCGCGAGGAAGAAGCTGAGGAGAGGGCTGTGGTCGC
CGGAGGAGGACGAGAAGCTGATGAACCACATTGCCAAGTATGGCCATGGCTGCTGGAGCT
CCGTCCCCAAGCTTGCAGGCCTTGAGAGATGTGGGAAGAGCTGCAGGCTGAGGTGGATAA
ACTACCTCAGGCCAGACCTCAAGAGGGGAGCATTCTCACAGGAAGAAGAAGACCTCATCA
TCCATCTCCATTCCATGCTAGGAAACAAGTGGTCTCAGATTGCGGCTCAGCTGCCGGGTC
GGACGGACAACGAGGTCAAGAACTTCTGGAACTCTTACATCAAGAAGAAGCTTCGCCAGC
GCGGCATCGATCCGGCCACCCACAAGCCGCTCGCCGAGGTCGTCGCCGCCGCCGCCTGCG
CCCGCACGCCGGCGGTGTTCAGCGACGCCGAGCTCATCCTGTCCTCCATCGGCGCCCAGC
CGCCGCCGGAGAGCTATGATGGCAGCCGGTACAGCACNGGAGTGCGGCGCCGCGAGTGTC
GGCGGCGACGGGTCGCTGTCGTCGCTGTCCGGGTACAGCCAAGCGACAGCGGAGTTCGCG
GTGGACGGCGCCAGCGCGAGCGCGCTGCTGCACTGCGG

consensusID : consensus_9584#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 536
fasta sequence

                              [GTGCACTTCGACGCCCACGCCCTCGCTANGTGGTTGCTAGCACGCGTACCCCTCCGTAAAAACACATTCTAGCTACAAACCTGGACATATGCGTGTCTAGATTCATAGCTAAAGTTTGTTTTTTTATGGGACAGAGTAGTACCATCTAGCTAAGCTCGAATCCCCCCCCAATTAGGCGCAACGAGACCGACGGCGAGCGATGACCATACAATGATCAGCCGATCCATTAGTAGGCNCCATAATTGCATGCAAGCATGCTGCTACGTATAAATGTACGTATACCTACGGGTCAAGTTTTCAACGTGTATACGCGCGTGTGAATTAATTAAGTAGTCGCGTACGTAATTAAGATCATAGCTGATGTTTGGTGAGAGGCTTTTTGGGTTGTCCAAAGATTTTTTTTTTTTTGGTTTAGTTTCTTTCATTTCTCTTCTCTCCTTTGATCGATCGATCGAGAGATATCGATGGATCGGCATTAGTTTGCTGCTTTTGAGTGACATGATTGTGATGATAATTAAAGTCTTTCAAAAAAAAAA]

[+] EMBL BI806391             [GTGCACTTCGACGCCCACGCCCTCGCTANGTGGTTGCTAGCACGCGTACCCCTCCGTAAAAACACATTCTAGCTACAAACCTGGACATATGCGTGTCTAGATTCATAGCTAAAGTTTGTTTTTTTATGGGACAGAGTAGTACCATCTAGCTAAGCTCGAATCCCCCCCCAATTAGGCGCAACGAGACCGACGGCGAGCGATGACCATACAATGATCAGCCGATCCATTAGTAGGCNCCATAATTGCATGCAAGCATGCTGCTACGTATAAATGTACGTATACCTACGGGTCAAGTTTTCAACGTGTATACGCGCGTGTGAATTAATTAAGTAGTCGCGTACGTAATTAAGATCATAGCTGATGTTTGGTGAGAGGCTTTTTGGGTTGTCCAAAGATTTTTTTTTTTTTGGTTTAGTTTCTTTCATTTCTCTTCTCTCCTTTGATCGATCGATCGAGAGATATCGATGGATCGGCATTAGTTTGCTGCTTTTGAGTGACATGATTGTGATGATAATTAAAGTCTTTCAAAAAAAAAA]




>consensus_9584#2
GTGCACTTCGACGCCCACGCCCTCGCTANGTGGTTGCTAGCACGCGTACCCCTCCGTAAA
AACACATTCTAGCTACAAACCTGGACATATGCGTGTCTAGATTCATAGCTAAAGTTTGTT
TTTTTATGGGACAGAGTAGTACCATCTAGCTAAGCTCGAATCCCCCCCCAATTAGGCGCA
ACGAGACCGACGGCGAGCGATGACCATACAATGATCAGCCGATCCATTAGTAGGCNCCAT
AATTGCATGCAAGCATGCTGCTACGTATAAATGTACGTATACCTACGGGTCAAGTTTTCA
ACGTGTATACGCGCGTGTGAATTAATTAAGTAGTCGCGTACGTAATTAAGATCATAGCTG
ATGTTTGGTGAGAGGCTTTTTGGGTTGTCCAAAGATTTTTTTTTTTTTGGTTTAGTTTCT
TTCATTTCTCTTCTCTCCTTTGATCGATCGATCGAGAGATATCGATGGATCGGCATTAGT
TTGCTGCTTTTGAGTGACATGATTGTGATGATAATTAAAGTCTTTCAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9584#0      GGAACTCTTACATCAAGAAGAAGCTTCGCCAGCGCGGCATCGATCCGGCCACCCACAAGC 60
consensus_9584#2      ------------------------------------------------------------
consensus_9584#1      -----------------------------AGCTCCTTCTTTCGTCTTCGTCTTCGCCATC 31
                                                                                  

consensus_9584#0      CGCTCAAGTGGTCCGATTACGTGTTCGACGGCTACAACCACCAGCTACCTCCGTACAACC 120
consensus_9584#2      ------------------------------------------------------------
consensus_9584#1      GTCGTCGGGACATCGCCGGCGGTTTGGTTTGTTCT--CTCTCGGTCGTCGTCG-GCGGCA 88
                                                                                  

consensus_9584#0      ATGGCGGCATCTATGGCGGCGGCGACAGAAGGACACGGCGGTGCACTTCGACGNCCACGC 180
consensus_9584#2      ----------------------------------------GTGCACTTCGACGCCCACGC 20
consensus_9584#1      ATTGCGACATTGAGCACGGTGGTGGTGGTGGCCATCTATGGCGAAGCGGGCGGGCGGCGC 148
                                                              * * *    *  * *  ***

consensus_9584#0      CCTCGGCAACTGGT-GCTAGCA-GC-TACCCCTCCGTAAAAAAAAAAAACAATTCT-AGC 236
consensus_9584#2      CCTCGCTANGTGGTTGCTAGCACGCGTACCCCTCCGTAAAAACACA------TTCT-AGC 73
consensus_9584#1      G--AGGAAGAAGCTGAGGAGAGGGCTGTGGTCGCCGGAGGAGGACGAGAAGCTGATGAAC 206
                          *  *   * *    **   **      * *** *  *  *        *  * * *

consensus_9584#0      TACAAACCTGGACATATGCGTGTCT-----AGATTCATAGCTAAAGTTTGTTTTTTTATG 291
consensus_9584#2      TACAAACCTGGACATATGCGTGTCT-----AGATTCATAGCTAAAGTTTGTTTTTTTATG 128
consensus_9584#1      CACATTGCCAAGTATGGCCATGGCTGCTGGAGCTCCGTCCCCAAGCTTGCAGGCCTTGAG 266
                       ***   *     **   * ** **     ** * * *  * **  **       **  *

consensus_9584#0      GGACAGAGTAGTACCATCTAGCTAAGCTCGA--ATCCACCCCAAATTAGGCGCAACGAGA 349
consensus_9584#2      GGACAGAGTAGTACCATCTAGCTAAGCTCGA--ATCCCCCCCCAATTAGGCGCAACGAGA 186
consensus_9584#1      AGATGTGGGAAGAGCTGCAGGCTGAGGTGGATAAACTACCTCAGGCCAGACCTCAAGAGG 326
                       **    * *  * *  *  *** ** * **  * *  ** *     ** *   * *** 

consensus_9584#0      --------CCGACGGCGAGCGATGAGCCATAGCAATGATCAGCCGATCAATTAGTAGGCG 401
consensus_9584#2      --------CCGACGGCGAGCGATGA-CCATA-CAATGATCAGCCGATCCATTAGTAGGCN 236
consensus_9584#1      GGAGCATTCTCACAGGAAGAAGAAGACCTCATCATCCATC--TCCATTCCATGCTAGGAA 384
                              *  ** *  **       **  * **   ***   * **    *  ****  

consensus_9584#0      CCATAATTGCATGCAAGCATGCTGCTACGNATAAAT-GTACGTATAC-TACGGGTCCAAG 459
consensus_9584#2      CCATAATTGCATGCAAGCATGCTGCTACGTATAAAT-GTACGTATACCTACGGGTC-AAG 294
consensus_9584#1      ACA-AGTGGTCTCAGATTGCGGCTCAGCTGCCGGGTCGGACGGACAACGAGGTCAAGAAC 443
                       ** * * *  *   *    *   *  *       * * *** * *   * *     ** 

consensus_9584#0      TTTTCCAACGTGTATACGCGCGTGTGAATTAATTAA------GTCGGCGCGTACGTAATT 513
consensus_9584#2      TTTTC-AACGTGTATACGCGCGTGTGAATTAATTAA------GTAGTCGCGTACGTAATT 347
consensus_9584#1      TTCTGGAACTCTTACATCAAGAAGAAGCTTCGCCAGCGCGGCATCGATCCGGCCACCCAC 503
                      ** *  ***   ** *       *    **    *        * *   **  *      

consensus_9584#0      AAGATCATAGCTGATGTTTGGTGAGAGG-TTTTTGGGTTGTCAAAAGATTTTTTTTTTTT 572
consensus_9584#2      AAGATCATAGCTGATGTTTGGTGAGAGGCTTTTTGGGTTGTCCAAAGATTTTTTTTTTTT 407
consensus_9584#1      AAGCCGCTCGCCGAGGTCGTCGCCGCCGCCGCCTGCGCCCGCACGCCGGCGGTGTTCAGC 563
                      ***    * ** ** **       *  *     ** *    *          * **    

consensus_9584#0      TTGGTTTAGTTTCTTTCATTTCTCTTCTCTCCTTTGATCGATCGATCGAGAGATATCGAT 632
consensus_9584#2      T-GGTTTAGTTTCTTTCATTTCTCTTCTCTCCTTTGATCGATCGATCGAGAGATATCGAT 466
consensus_9584#1      GACGCCGAGCTCATCCTGTCCTCCATCGGCGCCCAG--CCGCCGCCGGAGAGCTAT-GAT 620
                         *   ** *  *    *    * **    *   *  *   **   ***** *** ***

consensus_9584#0      GGATCGGGCATTAGTTTGCTGCTTTTGAGTGACATGATTGT-GATGATAATTAAAGTCTT 691
consensus_9584#2      GGATCGG-CATTAGTTTGCTGCTTTTGAGTGACATGATTGT-GATGATAATTAAAGTCTT 524
consensus_9584#1      GG--CAGCCGGTACAGCACNGGAGTGCGGCGCCGCGAGTGTCGGCGGCGACGGGTCGCTG 678
                      **  * * *  **     * *   *   * * *  ** *** *  *   *       ** 

consensus_9584#0      TAATCTCGATCGCCGGTACACGTACAACATGTAAAGTTCTTCATATGATGATATATATAA 751
consensus_9584#2      TCAAAAAAAAAA------------------------------------------------ 536
consensus_9584#1      TCGTCGCTGTC-CGGGTACAGCCAAGCGACAGCGGAGTTCGCGGTGGACGGCGCCAGCGC 737
                      *                                                           

consensus_9584#0      ATATATATATAGACATTGATGCTAAAAAA 780
consensus_9584#2      -----------------------------
consensus_9584#1      GAGCGCGCTGCTGCACTGCGG-------- 758