Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 9586 cluster # 9586       Sequences # 6       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9586#0 length = 1047 sequences # 4  
consensus_9586#1 length = 463 sequences # 1  
consensus_9586#2 length = 296 sequences # 1  

consensusID : consensus_9586#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1047
fasta sequence
                              [CCAACCGGAGTTAAGGAAGAAGGGAAGGAAAGCCACCCGAGCAAGCGGATCACATCGAGGTAGGGGAGGACCGGAGGAGCTGAGCTCAGCTCGGTGAGGGGTGGACTGGGAGTGCGTGGGTGGGTGTGATGGAGTGGACGACGGTGGAGGCGGCGAACGGGGCCAAGCTGAGCGTGCGGCTGTTCAAGCCGGCGGCGG-GGGCGGAGGCGGCGGCGGCGGAGGACGTCGCGGTGGTGCTGGTGCACCCCTACACGATCCTGGGCGGCGTGCAGGGCCTGCTGCGCGGGATCGCCGAGGGCGTCGCGCGGCGC-GGGTACCGCGCCGTCACCTTCGACATGCGCGGCGCCGGGAGGTCCACCGGCCGCGCCTCGCTCACCGGCTCCACCGAGGTCGGGGACGTCGAGGCCGTCTGCCGCTGGGTCGCTGACAATCTCAACCCGCGCGGCGTCCTCCTCGTCGGCTCCTCCGCTGGAGCACCAATAGCGGGATCTGCAGTTGATAAGGTTGACCAGGTCATTGGTTATGTTAGCATTGGGTACCCATTTGGTCTAATGGCCTCGGTCCTATTTGGCAGACACCACAATGCTATCCTCAAGTCTGAGAAACCAAAGTTATTCGTCATGGGAACTAAAGATGGCTTCACAAGTGTAAAGCAGCTGCAAAACAAGCTCAAGAATGCAGCAGGACGGGTTGATACTCACTTGATCGAAGGAGCTGGCCACTTCCAAATGGAAGGCCCTGCTTTTGATGCACGAATGGTTGACCTTATTGTTAATTTCATCAAATCCTTGCCCAAATAGCATTGACAGTGACTGTGTGCAAATTTGTCATGATTGTAGTGAGTTAGTGACAAACAAAAGAAGCTATTGAACAGTGCATTCATGGTGTGTATTTTCTCATCTTGTAATTGTACACTTGGTGTTGTAATTTTAGTTCAATCCGTGTTTCTTTCGAAGCCTAGTGTAAGATGATGAGTTTCAGATACAATACATTTACAGGATATGACATTTCATGGTTTCAGTCNAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK063741             [CCAACCGGAGTTAAGGAAGAAGGGAAGGAAAGCCACCCGAGCAAGCGGATCACATCGAGGTAGGGGAGGACCGGAGGAGCTGAGCTCAGCTCGGTGAGGGGTGGACTGGGAGTGCGTGGGTGGGTGTGATGGAGTGGACGACGGTGGAGGCGGCGAACGGGGCCAAGCTGAGCGTGCGGCTGTTCAAGCCGGCGGCGG GGGCGGAGGCGGCGGCGGCGGAGGACGTCGCGGTGGTGCTGGTGCACCCCTACACGATCCTGGGCGGCGTGCAGGGCCTGCTGCGCGGGATCGCCGAGGGCGTCGCGCGGCGC GGGTACCGCGCCGTCACCTTCGACATGCGCGGCGCCGGGAGGTCCACCGGCCGCGCCTCGCTCACCGGCTCCACCGAGGTCGGGGACGTCGAGGCCGTCTGCCGCTGGGTCGCTGACAATCTCAACCCGCGCGGCGTCCTCCTCGTCGGCTCCTCCGCTGGAGCACCAATAGCGGGATCTGCAGTTGATAAGGTTGACCAGGTCATTGGTTATGTTAGCATTGGGTACCCATTTGGTCTAATGGCCTCGGTCCTATTTGGCAGACACCACAATGCTATCCTCAAGTCTGAGAAACCAAAGTTATTCGTCATGGGAACTAAAGATGGCTTCACAAGTGTAAAGCAGCTGCAAAACAAGCTCAAGAATGCAGCAGGACGGGTTGATACTCACTTGATCGAAGGAGCTGGCCACTTCCAAATGGAAGGCCCTGCTTTTGATGCACGAATGGTTGACCTTATTGTTAATTTCATCAAATCCTTGCCCAAATAGCATTGACAGTGACTGTGTGCAAATTTGTCATGATTGTAGTGAGTTAGTGACAAACAAAAGAAGCTATTGAACAGTGCATTCATGGTGTGTATTTTCTCATCTTGTAATTGTACACTTGGTGTTGTAATTTTAGTTCAATCCGTGTTTCTTTCGAAGCCTAGTGTAAGATGATGAGTTTCAGATACAATACATTTACAGGATATGACATT                                      ]
[+] EMBL C74354               [                                                                                                                                            ACGGTGGAGGCGGCGAACGGGGCCAAGCTGAGCGTGCGGCTGTTCAAGCCGGCGGCGGTGGGCGGAGGCGGCGGCGGCGGAGGACGTCGCGGTGGTGCTGGTGCA CCCTACACGATCCTGGGCGGCGTGCAGGGCCTGCTGCGCGGGATCGCCGAGGGCGTCGCGCGGCGCGGGGTAAC NTNCNACCCTTTCGACATGCGCNGCGCCGGGAAGTCCACCGGCCGCGCCTCGCTCACCGGCTCCANCGANGTCGGGGACGTCGAAGCCGTCTGCCGCTGGGTCGCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CB678792             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AGTGTACTTCAGCTGCAAAACAAGCTCAAGAATGCAGCAGGACGGGTTGATACTCACTTGATCGAAGGAGCTGGCCACTTCCAAATGGAAGGCCCTGCTTTTGATGCACGAATGGTTGACCTTATTGTTAATTTCATCAAATCCTTGCCCAAATAGCATTGACAGTGACTGTGTGCAAATTTGTCATGATTGTAGTGAGTTAGTGACAAACAAAAGAAGCTATTGAACAGTGCATTCATGGTGTGTATTTTCTCATCTTGTAATTGTACACTTGGTGTTGTAATTTTAGTTCAATCCGTGTTTCTTTCGAAGCCTAGTGTAAGATGATGAGTTTCAGATACAATACATTTACAGGATATGACATTTCATGGT                               ]
[+] EMBL AU172802             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GACCTTATTGTTAATTTCATCAAATCCTTGCCCAAANAGCATTGACAGTGACTGTGNGCAAATTTGTCATGATTGTAGTGAGTTAGTGACAAACAAAANAAGCTATTGAACAGNGCATTCATGGNGNGTATTTTCTCATCTTGNAATTGNACACTTGGTGTTGTAATTTTAGTTCAATCCGTGTTTCTTTNGAAGCCTAGTGTAANATGATGAGTTTCAGATACAATACATTTACAGGATATGACATTTCATGGTTTCAGTCNAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_9586#0 CCAACCGGAGTTAAGGAAGAAGGGAAGGAAAGCCACCCGAGCAAGCGGATCACATCGAGG TAGGGGAGGACCGGAGGAGCTGAGCTCAGCTCGGTGAGGGGTGGACTGGGAGTGCGTGGG TGGGTGTGATGGAGTGGACGACGGTGGAGGCGGCGAACGGGGCCAAGCTGAGCGTGCGGC TGTTCAAGCCGGCGGCGGGGGCGGAGGCGGCGGCGGCGGAGGACGTCGCGGTGGTGCTGG TGCACCCCTACACGATCCTGGGCGGCGTGCAGGGCCTGCTGCGCGGGATCGCCGAGGGCG TCGCGCGGCGCGGGTACCGCGCCGTCACCTTCGACATGCGCGGCGCCGGGAGGTCCACCG GCCGCGCCTCGCTCACCGGCTCCACCGAGGTCGGGGACGTCGAGGCCGTCTGCCGCTGGG TCGCTGACAATCTCAACCCGCGCGGCGTCCTCCTCGTCGGCTCCTCCGCTGGAGCACCAA TAGCGGGATCTGCAGTTGATAAGGTTGACCAGGTCATTGGTTATGTTAGCATTGGGTACC CATTTGGTCTAATGGCCTCGGTCCTATTTGGCAGACACCACAATGCTATCCTCAAGTCTG AGAAACCAAAGTTATTCGTCATGGGAACTAAAGATGGCTTCACAAGTGTAAAGCAGCTGC AAAACAAGCTCAAGAATGCAGCAGGACGGGTTGATACTCACTTGATCGAAGGAGCTGGCC ACTTCCAAATGGAAGGCCCTGCTTTTGATGCACGAATGGTTGACCTTATTGTTAATTTCA TCAAATCCTTGCCCAAATAGCATTGACAGTGACTGTGTGCAAATTTGTCATGATTGTAGT GAGTTAGTGACAAACAAAAGAAGCTATTGAACAGTGCATTCATGGTGTGTATTTTCTCAT CTTGTAATTGTACACTTGGTGTTGTAATTTTAGTTCAATCCGTGTTTCTTTCGAAGCCTA GTGTAAGATGATGAGTTTCAGATACAATACATTTACAGGATATGACATTTCATGGTTTCA GTCNAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_9586#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 463
fasta sequence
                              [AGGTTGACCAGGTCATTGGTTATGTTAGCATTGGGTACCCATTTGGTCTAATGGCCTCGGTCCTATTTGGCAGACACCACAATGCTATCCTCAAGTCTGAGAAACCAAAGTTATCCTCATGGGAACTAAAGATGGCTTCACAAGTGTAAAGCAGCTGCAAAACAAGCTCAAGAATGCAGCAGGACGGGTTGATACTCACTTGATCGAAGGAGCTGGCCACTTCCAAATGGAAGGCCCTGCTTTTGATGCACGAATGGTTGACCTTATTGTTAATTTCATCAAATCCTTGCCCAAATAGCATTGACAGTGACTGTGTGCAAATTTGTCATGATTGTAGTGAGTTAGTGACAAACAAAAGAAGCTATTGAACAGTGCATTCATGGTGTGTATTTTCTCATCTTGTAATTGTACACTTGGTGTTGTAATTTTAGTTCAATCCGTGTTTCTTTCGAAAAAAAAAAAA]

[+] EMBL AU101407             [AGGTTGACCAGGTCATTGGTTATGTTAGCATTGGGTACCCATTTGGTCTAATGGCCTCGGTCCTATTTGGCAGACACCACAATGCTATCCTCAAGTCTGAGAAACCAAAGTTATCCTCATGGGAACTAAAGATGGCTTCACAAGTGTAAAGCAGCTGCAAAACAAGCTCAAGAATGCAGCAGGACGGGTTGATACTCACTTGATCGAAGGAGCTGGCCACTTCCAAATGGAAGGCCCTGCTTTTGATGCACGAATGGTTGACCTTATTGTTAATTTCATCAAATCCTTGCCCAAATAGCATTGACAGTGACTGTGTGCAAATTTGTCATGATTGTAGTGAGTTAGTGACAAACAAAAGAAGCTATTGAACAGTGCATTCATGGTGTGTATTTTCTCATCTTGTAATTGTACACTTGGTGTTGTAATTTTAGTTCAATCCGTGTTTCTTTCGAAAAAAAAAAAA]


>consensus_9586#1 AGGTTGACCAGGTCATTGGTTATGTTAGCATTGGGTACCCATTTGGTCTAATGGCCTCGG TCCTATTTGGCAGACACCACAATGCTATCCTCAAGTCTGAGAAACCAAAGTTATCCTCAT GGGAACTAAAGATGGCTTCACAAGTGTAAAGCAGCTGCAAAACAAGCTCAAGAATGCAGC AGGACGGGTTGATACTCACTTGATCGAAGGAGCTGGCCACTTCCAAATGGAAGGCCCTGC TTTTGATGCACGAATGGTTGACCTTATTGTTAATTTCATCAAATCCTTGCCCAAATAGCA TTGACAGTGACTGTGTGCAAATTTGTCATGATTGTAGTGAGTTAGTGACAAACAAAAGAA GCTATTGAACAGTGCATTCATGGTGTGTATTTTCTCATCTTGTAATTGTACACTTGGTGT TGTAATTTTAGTTCAATCCGTGTTTCTTTCGAAAAAAAAAAAA



consensusID : consensus_9586#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 296
fasta sequence
                              [GGAGGACGTCGCGGTGGTGCTGGTGCACCCTACACGATCCTGGGCGGCGTGCANGGCCTGCTGCGCGGGATNGNCGAGGGCGTNGCGCGGCGCGGTGTACNNTTCTACGCTTTCGACATGCGCGGCGCCGGGAGGTCCACCGGCCGCGCTCGCTCACCGGCTCCACCGAGGTCGGGGACGTCGAGGCCGTNTGCCGCTGGGTCGCTGANAATCTCAAACCGCGCGGCGTCCTCNTCGTCGGCTCCTNCGCTGGAGCACCAATAGCGGGATTTGCAATTGAAAAGGTTGAACAGGTC]

[+] EMBL C74233               [GGAGGACGTCGCGGTGGTGCTGGTGCACCCTACACGATCCTGGGCGGCGTGCANGGCCTGCTGCGCGGGATNGNCGAGGGCGTNGCGCGGCGCGGTGTACNNTTCTACGCTTTCGACATGCGCGGCGCCGGGAGGTCCACCGGCCGCGCTCGCTCACCGGCTCCACCGAGGTCGGGGACGTCGAGGCCGTNTGCCGCTGGGTCGCTGANAATCTCAAACCGCGCGGCGTCCTCNTCGTCGGCTCCTNCGCTGGAGCACCAATAGCGGGATTTGCAATTGAAAAGGTTGAACAGGTC]


>consensus_9586#2 GGAGGACGTCGCGGTGGTGCTGGTGCACCCTACACGATCCTGGGCGGCGTGCANGGCCTG CTGCGCGGGATNGNCGAGGGCGTNGCGCGGCGCGGTGTACNNTTCTACGCTTTCGACATG CGCGGCGCCGGGAGGTCCACCGGCCGCGCTCGCTCACCGGCTCCACCGAGGTCGGGGACG TCGAGGCCGTNTGCCGCTGGGTCGCTGANAATCTCAAACCGCGCGGCGTCCTCNTCGTCG GCTCCTNCGCTGGAGCACCAATAGCGGGATTTGCAATTGAAAAGGTTGAACAGGTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9586#0      CCAACCGGAGTTAAGGAAGAAGGGAAGGAAAGCCACCCGAGCAAGCGGATCACATCGAGG 60
consensus_9586#1      ------------------------------------------------------------
consensus_9586#2      ------------------------------------------------------------
                                                                                  

consensus_9586#0      TAGGGGAGGACCGGAGGAGCTGAGCTCAGCTCGGTGAGGGGTGGACTGGGAGTGCGTGGG 120
consensus_9586#1      ------------------------------------------------------------
consensus_9586#2      ------------------------------------------------------------
                                                                                  

consensus_9586#0      TGGGTGTGATGGAGTGGACGACGGTGGAGGCGGCGAACGGGGCCAAGCTGAGCGTGCGGC 180
consensus_9586#1      ------------------------------------------------------------
consensus_9586#2      ------------------------------------------------------------
                                                                                  

consensus_9586#0      TGTTCAAGCCGGCGGCGGGGGCGGAGGCGGCGGCGGCGGAGGACGTCGCGGTGGTGCTGG 240
consensus_9586#1      ------------------------------------------------------------
consensus_9586#2      ------------------------------------------------------------
                                                                                  

consensus_9586#0      TGCACCCCTACACGATCCTGGGCGGCGTGCAGGGCCTGCTGCGCGGGATCGCCGAGGGCG 300
consensus_9586#1      ------------------------------------------------------------
consensus_9586#2      ------------------------------------------------------------
                                                                                  

consensus_9586#0      TCGCGCGGCGCGGGTACCGCGCCGTCACCTTCGACATGCGCGGCGCCGGGAGGTCCACCG 360
consensus_9586#1      ------------------------------------------------------------
consensus_9586#2      ------------------------------------------------------------
                                                                                  

consensus_9586#0      GCCGCGCCTCGCTCACCGGCTCCACCGAGGTCGGGGACGTCGAGGCCGTCTGCCGCTGGG 420
consensus_9586#1      ------------------------------------------------------------
consensus_9586#2      ------------------------------------------------------------
                                                                                  

consensus_9586#0      TCGCTGACAATCTCAACCCGCGCGGCGTCCTCCTCGTCGGCTCCTCCGCTGGAGCACCAA 480
consensus_9586#1      ------------------------------------------------------------
consensus_9586#2      ------------------------------------------------------------
                                                                                  

consensus_9586#0      TAGCGGGATCTGCAGTTGATAAGGTTGACCAGGTCATTGGTTATGTTAGCATTGGGTACC 540
consensus_9586#1      ---------------------AGGTTGACCAGGTCATTGGTTATGTTAGCATTGGGTACC 39
consensus_9586#2      ------------------------------------------------------------
                                                                                  

consensus_9586#0      CATTTGGTCTAATGGCCTCGGTCCTATTTGGCAGACACCACAATGCTATCCTCAAGTCTG 600
consensus_9586#1      CATTTGGTCTAATGGCCTCGGTCCTATTTGGCAGACACCACAATGCTATCCTCAAGTCTG 99
consensus_9586#2      ------------------------------------------------------------
                                                                                  

consensus_9586#0      AGAAACCAAAGTTATTCGTCATGGGAACTAAAGATGGCTTCACAAGTGTAAAGCAGCTGC 660
consensus_9586#1      AGAAACCAAAGTTATCC-TCATGGGAACTAAAGATGGCTTCACAAGTGTAAAGCAGCTGC 158
consensus_9586#2      -------------------------------GGAGGACGTCGCGGTGGTGCTGGTGC-AC 28
                                                      ** * * ** *    **   *  **  *

consensus_9586#0      AAAACAAGCTCAAGAATGCAGCAGGACGGGTTGATACTCACT-TGATCGAAGGAGCTGGC 719
consensus_9586#1      AAAACAAGCTCAAGAATGCAGCAGGACGGGTTGATACTCACT-TGATCGAAGGAGCTGGC 217
consensus_9586#2      CCTACACGATCCTGGGCGGCGT-GCANGGCCTGCTGCGCGGGATNGNCGAGGGCGTNGCG 87
                         *** * **  *   *  *  * * **  ** * * *    *   *** ** *  *  

consensus_9586#0      CACTTCCAAATGGAAGGCCCTGCTTTTGATGCACGAATGGTTGACCTTATTGTTAATTTC 779
consensus_9586#1      CACTTCCAAATGGAAGGCCCTGCTTTTGATGCACGAATGGTTGACCTTATTGTTAATTTC 277
consensus_9586#2      CGGCGCGGTGTACNNTTCTACGCTTTCGACATGCG---------CGGCGCCGGGAGGTCC 138
                      *    *    *      *   ***** **    **         *      *  *  * *

consensus_9586#0      ATCAAATCCTTGCCCAAATAGCATTGACAGTGACTGTGTGCAAATTTGTCATGATTGTAG 839
consensus_9586#1      ATCAAATCCTTGCCCAAATAGCATTGACAGTGACTGTGTGCAAATTTGTCATGATTGTAG 337
consensus_9586#2      ACCGGCCGCGCTCGCTCACCGGCTCCACCGAGGTCGGGGACGTCGAGGCCGTN-TGCCGC 197
                      * *     *   * *  *  *  *  ** * *   * *  *      * * *  *     

consensus_9586#0      TGAGTTAGTGACAAACAAAAGAAGCTATTGAACAGTGCATTCATGGTGTGTATTTTCTCA 899
consensus_9586#1      TGAGTTAGTGACAAACAAAAGAAGCTATTGAACAGTGCATTCATGGTGTGTATTTTCTCA 397
consensus_9586#2      TGGGTCGCTGANAATCTCAA------ACCGCGCGGCGTCCTCNTCGT---CGGCTCCTNC 248
                      ** **   *** ** *  **      *  *  * * *   ** * **       * **  

consensus_9586#0      TCTTGTAATTGTACACTTGGTGTTGTAATTTTA---GTTCAATCCGTGTTTCTTTCGAAG 956
consensus_9586#1      TCTTGTAATTGTACACTTGGTGTTGTAATTTTA---GTTCAATCCGTGTTTCTTTCGAAA 454
consensus_9586#2      GCTGGAGCACCAATAGCGGGATTTGCAATTGAAAAGGTTGAACAGGTC------------ 296
                       ** *       * *   **  *** ****  *   *** **   **             

consensus_9586#0      CCTAGTGTAAGATGATGAGTTTCAGATACAATACATTTACAGGATATGACATTTCATGGT 1016
consensus_9586#1      AAAAAAAAA--------------------------------------------------- 463
consensus_9586#2      ------------------------------------------------------------
                                                                                  

consensus_9586#0      TTCAGTCNAAAAAAAAAAAAAAAAAAAAAAA 1047
consensus_9586#1      -------------------------------
consensus_9586#2      -------------------------------
                                                     




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)