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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9592#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 692 fasta sequence
[TCAGCACAAACCAAAATGGCAGCCAGGAGCTCCCTCCATCCTTCCTCCATGGCCAGCATCCCAAGATTAATTGGCACCAGGAAGGCAGCCCTAAGGTTCAGAGCTCCTGCCCATGGCGGCACCAGCTCATCACAGCTTTCCATCGCTGCAGCAACTGCTAACAAGAAGGTGTTTGAGGACCAGTTGAGAGGGATTGTGTGCTACAGAGATGACAAGGGAGAGATGGTCTGTGAAGGGTATGATGAAGGTCCAAGGCTCGGAATGCGGCTGCCGGAGAAGGCCTGCTTCCCATGGCCTATGGAGGTTCAGATCACTGATTTCATTGAGCTGGCGACGTTCCGGGTCTTCGAAGATGCCGATGTTCTTCAGATCAAGAATGATCAGAAGAGGCAGATCTGAGAAGAACTGATCAATGATCATGTAGTGCAAGGCAGTAGTTGTATAGAAATGCTCATGTGTAAGAATAATTTTCAAGGTATGGAATTCAAGTACACTGAAGAGGCAGTTCTGATGTAGTTCTGTACCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATATATATATATATATATATATATATATAGTTTGGCTAATTTTTCAGATTTACAATTCTGTGCTTTTAAAAACAGTACATTGGTTCATGGAGAACTTGTACATTTGTCCTT]
[+] EMBL AK062548 [TCAGCACAAACCAAAATGGCAGCCAGGAGCTCCCTCCATCCTTCCTCCATGGCCAGCATCCCAAGATTAATTGGCACCAGGAAGGCAGCCCTAAGGTTCAGAGCTCCTGCCCATGGCGGCACCAGCTCATCACAGCTTTCCATCGCTGCAGCAACTGCTAACAAGAAGGTGTTTGAGGACCAGTTGAGAGGGATTGTGTGCTACAGAGATGACAAGGGAGAGATGGTCTGTGAAGGGTATGATGAAGGTCCAAGGCTCGGAATGCGGCTGCCGGAGAAGGCCTGCTTCCCATGGCCTATGGAGGTTCAGATCACTGATTTCATTGAGCTGGCGACGTTCCGGGTCTTCGAAGATGCCGATGTTCTTCAGATCAAGAATGATCAGAAGAGGCAGATCTGAGAAGAACTGATCAATGATCATGTAGTGCAAGGCAGTAGTTGTATAGAAATGCTCATGTGTAAGAATAATTTTCAAGGTATGGAATTCAAGTACACTGAAGAGGCA ]
[+] EMBL CB000610 [ TCAGAGCTCCTGCCCATGGCGGCACCAGCTCATCACAGCTTTCCATCGCTGCAGCAACTGCTAACAAGAAGGTGTTTGAGGACCAGTTGAGAGGGATTGTGTGCTACAGAGATGACAAGGGAGAGATGGTCTGTGAAGGGTATGATGAAGGTCCAAGGCTCGGAATGCGGCTGCCGGAGAAGGCCTGCTTCCCATGGCCTATGGAGGTTCAGATCACTGATTTCATTGAGCTGGCGACGTTCCGGGTCTTCGAAGATGCCGATGTTCTTCAGATCAAGAATGATCAGAAGAGGCAGATCTGAGAAGAACTGATCAATGATCATGTAGTGCAAGGCAGTAGTTGTATAGAAATGCTCATGTGTAAGAATAATTTTCAAGGTATGGAATTCAAGTACACTGAAGAGGCAGTTCTGATGTAGTTCTGTACCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATATATATATATATATATATATATATATAGTTTGGCTAATTTTTCAGATTTACAATTCTGTGCTTTTAAAAACAGTACATTGGTTCATGGAGAACTTGTACATTTGTCCTT]
consensusID : consensus_9592#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence
[CCCTCCATCCTTCCTCCATGGCCAGCATCCCAAGATTAATTGGCACCAGGAAGGCAGCCCTAAGGTTCAGAGCTCCTGCCCATGGCGGCACCAGCTCATCACAGCTTTCCATCGCTGCNAGCAACTGGGCTAACAAGAAGGTGGTTTTGGAGGNAAACCAGTTGAAAGAAGGGGAAATTTGTGTGTGTGGCTTTACAAAAAAAAAAAAAGGTGGNTCCNCCCCCCCCCCCCCCCCCCCNCCCCNNTNNNNTTNTNNNNNTGGCCTCGCTNTNTTTTTCTTNTCTTCTTTTCTCTCCTTCCTCTCCCTTCCTTCCCTTNCCGTTCGTCCCTTCCCCTCCGTGGCCGCGCCTGCGTCTCCCGCCCCCCGGCGCGGCCCCTCCGNCTTTGCTGGCCTGTGTGCCGTGGCGGGGGGGGCGGGGCGGTCGTCGGGGGGTTGCGGCGGGGGCGCCCGCCGGCNTTGCCTGCCTGGTGTCGCCGCGGGNCTCTCCTTGCCTCGGTTGGTGGGCGNCGGGGTGCGCGTGGGGGGTGCGGGGGGGTGGGGCGCGTGTTGCGGGTGCGGGGCGGGCGGCCTGGGTGGTGTTTTGTGGCGGGGCGCGGCGGGGCGCCTCG]
[+] EMBL CA755904 [CCCTCCATCCTTCCTCCATGGCCAGCATCCCAAGATTAATTGGCACCAGGAAGGCAGCCCTAAGGTTCAGAGCTCCTGCCCATGGCGGCACCAGCTCATCACAGCTTTCCATCGCTGCNAGCAACTGGGCTAACAAGAAGGTGGTTTTGGAGGNAAACCAGTTGAAAGAAGGGGAAATTTGTGTGTGTGGCTTTACAAAAAAAAAAAAAGGTGGNTCCNCCCCCCCCCCCCCCCCCCCNCCCCNNTNNNNTTNTNNNNNTGGCCTCGCTNTNTTTTTCTTNTCTTCTTTTCTCTCCTTCCTCTCCCTTCCTTCCCTTNCCGTTCGTCCCTTCCCCTCCGTGGCCGCGCCTGCGTCTCCCGCCCCCCGGCGCGGCCCCTCCGNCTTTGCTGGCCTGTGTGCCGTGGCGGGGGGGGCGGGGCGGTCGTCGGGGGGTTGCGGCGGGGGCGCCCGCCGGCNTTGCCTGCCTGGTGTCGCCGCGGGNCTCTCCTTGCCTCGGTTGGTGGGCGNCGGGGTGCGCGTGGGGGGTGCGGGGGGGTGGGGCGCGTGTTGCGGGTGCGGGGCGGGCGGCCTGGGTGGTGTTTTGTGGCGGGGCGCGGCGGGGCGCCTCG]
consensusID : consensus_9592#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 541 fasta sequence
[ATGGCGGCAATGAGCTCTTGCCATCACCTTTCTTCCTCCATTTCCACCCCAAGATTTGGCACAAGGAAGGCAACCATGGCCAAGTTCGTCAGAGCTCCAGTGCACAGCTGCAGCTGCAGCAATGCTCACCTCTCCCAAACTGCAGCACCTGCCAAGATGGTATTTGAAGACCAGGTGAGAGGAGTGGTATGTTACAGAGATGATAAGGGGAATATGATCTGCGAAGGGTACGATGAAGGGCCTAGGCTTGGCATGCGGCTGCCGGAGAAGGCCTGCTTCCCATGGCCTATGGGGGTTCAAGTCACCGATTTCATCGAGCTGTCGACGCTTCGAGTTTTCGAAGACGTCGATTCTCTGCAGCCCAGGAAAGATCAGAAGGGGAAGCTCTGAAATAAGGTTTCTGAAATTCAGACATACAAGGCCTAAGAATTGCTACATGAATAAGCTGAAACTCTATCCATTTTCATATATACTCATTATCATTTCTTGCTGATAAATGAGTTTTAGTATTGTTCGTCTCAATTATCAACTGGATCCTTCT]
[+] EMBL AK062387 [ATGGCGGCAATGAGCTCTTGCCATCACCTTTCTTCCTCCATTTCCACCCCAAGATTTGGCACAAGGAAGGCAACCATGGCCAAGTTCGTCAGAGCTCCAGTGCACAGCTGCAGCTGCAGCAATGCTCACCTCTCCCAAACTGCAGCACCTGCCAAGATGGTATTTGAAGACCAGGTGAGAGGAGTGGTATGTTACAGAGATGATAAGGGGAATATGATCTGCGAAGGGTACGATGAAGGGCCTAGGCTTGGCATGCGGCTGCCGGAGAAGGCCTGCTTCCCATGGCCTATGGGGGTTCAAGTCACCGATTTCATCGAGCTGTCGACGCTTCGAGTTTTCGAAGACGTCGATTCTCTGCAGCCCAGGAAAGATCAGAAGGGGAAGCTCTGAAATAAGGTTTCTGAAATTCAGACATACAAGGCCTAAGAATTGCTACATGAATAAGCTGAAACTCTATCCATTTTCATATATACTCATTATCATTTCTTGCTGATAAATGAGTTTTAGTATTGTTCGTCTCAATTATCAACTGGATCCTTCT]
consensusID : consensus_9592#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 438 fasta sequence
[GNTNTGGGTGCTAATGATCATGCTTGCCTTCTGTCCTCTGAAGAACAGGCCTATGGAGGTTCAGATCACTGATTCATTGAGCTGGCGACGTTCCGGGTCTTCGAAGATGCCGATGTTCTTCAGATCAAGAATGATCAGAAGAGGCAGATCTGAGAAGAACTGATCAATGATCATGTAGTGCAAGGCAGTAGTTGTATAGAAATGCTCATGTGTAAGAATAATTTTCAAGGTATGGAATTCAAGTACACTGAAGAGGCAGTTCTGATGTAGTTCTGTACCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATAGTTTGGCTAATTTTTCAGATTTAGAATTCTGTGCTTTTAAAAACAGTAAATTGGTTCATGGAGAACTTGTAAATTTGTCCTTGTGAAGCAATCAAGATTCAGAACAGAAAAAAA]
[+] EMBL AU102013 [GNTNTGGGTGCTAATGATCATGCTTGCCTTCTGTCCTCTGAAGAACAGGCCTATGGAGGTTCAGATCACTGATTCATTGAGCTGGCGACGTTCCGGGTCTTCGAAGATGCCGATGTTCTTCAGATCAAGAATGATCAGAAGAGGCAGATCTGAGAAGAACTGATCAATGATCATGTAGTGCAAGGCAGTAGTTGTATAGAAATGCTCATGTGTAAGAATAATTTTCAAGGTATGGAATTCAAGTACACTGAAGAGGCAGTTCTGATGTAGTTCTGTACCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATAGTTTGGCTAATTTTTCAGATTTAGAATTCTGTGCTTTTAAAAACAGTAAATTGGTTCATGGAGAACTTGTAAATTTGTCCTTGTGAAGCAATCAAGATTCAGAACAGAAAAAAA]
consensusID : consensus_9592#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 372 fasta sequence
[CAGCCAGGAGCTCCCTCCATCCTTCCTCCATGGCCAGCATCCCAAGATTAATTGGCACCAGGAAGGCAGCCCTAAGGTTCAGAGCTCCTGCCCATGGCGGCACCAGCTCATCACAGCTTTCCATCGCTGCAGCAACTGCTAACAAGAAGGTGTTTGAGGACCAGTTGAGAGGGATTGTGTGCTACAGAGATGACAAGGGAGAGATGGTCTGTGAAGGGTATGATGAAGGTCCAAGGCTCGGAATGCGGCTGCCGGAGAAGGCCTGCTTTCCCATGGTAATTGCCAACATCTGAATTTACTGAATTTTTTCCTGACATGCTGAAAGGAGAAAGAAGATTAGCATATGTTGCCTGATGAGGATTTTTGTTGTCT]
[+] EMBL OSC0681 [CAGCCAGGAGCTCCCTCCATCCTTCCTCCATGGCCAGCATCCCAAGATTAATTGGCACCAGGAAGGCAGCCCTAAGGTTCAGAGCTCCTGCCCATGGCGGCACCAGCTCATCACAGCTTTCCATCGCTGCAGCAACTGCTAACAAGAAGGTGTTTGAGGACCAGTTGAGAGGGATTGTGTGCTACAGAGATGACAAGGGAGAGATGGTCTGTGAAGGGTATGATGAAGGTCCAAGGCTCGGAATGCGGCTGCCGGAGAAGGCCTGCTTTCCCATGGTAATTGCCAACATCTGAATTTACTGAATTTTTTCCTGACATGCTGAAAGGAGAAAGAAGATTAGCATATGTTGCCTGATGAGGATTTTTGTTGTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9592#1 ------------------------------------------------------------
consensus_9592#4 ------------------------------------------------------------
consensus_9592#2 ------------------------------------------------------------
consensus_9592#0 TCAGCACAAACCAAAATGGCAGCCAGGAGCTCCCTCCATCCTTCCTCCATGGCCAGCATC 60
consensus_9592#3 ------------------------------------------------------------
consensus_9592#1 ------------------------------------------------------------
consensus_9592#4 ------------------------------------------------------------
consensus_9592#2 ------------------------------------------------------------
consensus_9592#0 CCAAGATTAATTGGCACCAGGAAGGCAGCCCTAAGGTTCAGAGCTCCTGCCCATGGCGGC 120
consensus_9592#3 ------------------------------------------------------------
consensus_9592#1 ------------------------------------------------------------
consensus_9592#4 ------------------------------------------------------------
consensus_9592#2 ------------------------------------------------------------
consensus_9592#0 ACCAGCTCATCACAGCTTTCCATCGCTGCAGCAACTGCTAACAAGAAGGTGTTTGAGGAC 180
consensus_9592#3 ------------------------------------------------------------
consensus_9592#1 ----------------------------------------------CCCTCCATCCTTCC 14
consensus_9592#4 ----------------------------------CAGCCAGGAGCTCCCTCCATCCTTCC 26
consensus_9592#2 ---------------------------ATGGCGGCAATGAGCTCTTGCCATCACCTTTCT 33
consensus_9592#0 CAGTTGAGAGGGATTGTGTGCTACAGAGATGACAAGGGAGAGATGGTCTGTGAAGGGTAT 240
consensus_9592#3 ---------------------------------------------------GNTNTGGGT 9
consensus_9592#1 TCCATGGCCAGCATCCCAAGATTAATTGGCACCAGGAAGGCAGCC-----CTAAGGT--T 67
consensus_9592#4 TCCATGGCCAGCATCCCAAGATTAATTGGCACCAGGAAGGCAGCC-----CTAAGGT--T 79
consensus_9592#2 TCCTCCATTTCCACCCCAAGATT---TGGCACAAGGAAGGCAACCATGG-CCAAGTTCGT 89
consensus_9592#0 GATGAAGGTCCAAGGCTCGGAAT--GCGGCTGCCGGAGAAGGCCTGCTTCCCATGGCCTA 298
consensus_9592#3 GCTAATGATC--ATGCTTGCCTT--CTGTCCTCTGAAGAACA------------GGCCTA 53
* * * * * * * *
consensus_9592#1 CAGAGCTCCTGCCCA-TGGCGGCACC-----AGC-TCATCACAGCTTTCCATCGCTGCNA 120
consensus_9592#4 CAGAGCTCCTGCCCA-TGGCGGCACC-----AGC-TCATCACAGCTTTCCATCGCTGCA- 131
consensus_9592#2 CAGAGCTCCAGTGCA-CAGCTGCAGCTG--CAGC-AATGCTCACCTCTCCCAAACTGCA- 144
consensus_9592#0 TGGAGGTTCAGATCACTGATTTCATTGAGCTGGCGACGTTCCGGGTCTTCGAAGATGCCG 358
consensus_9592#3 TGGAGGTTCAGATCACTGATT-CATTGAGCTGGCGACGTTCCGGGTCTTCGAAGATGCCG 112
*** * * * ** ** ** * * * * ***
consensus_9592#1 GCAACTGGGCTAACAAGAAGGTGGTTTTGGAGGNAAACCAGTTGAAAGAAGGGGAAATTT 180
consensus_9592#4 GCAACTG--CTAACAAGAAGGTGTTT------GAGGACCAGTTGAGAG-----GGATTGT 178
consensus_9592#2 GCACCTG-----CCAAGATGGTATTT------GAAGACCAGGTGAGAG-----GAGTGGT 188
consensus_9592#0 ATGTTCTTCAGATCAAGAA--TGATC----AGAAGAGGCAGATCTGAGAAGAACTGATCA 412
consensus_9592#3 ATGTTCTTCAGATCAAGAA--TGATC----AGAAGAGGCAGATCTGAGAAGAACTGATCA 166
***** * * *** * **
consensus_9592#1 GTGTGTGTGGCTTTACAAAAAAAAAAAAAGGTGGNTCCNCCCCCCCCCCCCCCCCCCCNC 240
consensus_9592#4 GTGCTACAGAGATGACAAGGGAGAGATGGTCTGTGAAGGGTATGATGAAGGTCCAAGGCT 238
consensus_9592#2 ATGTTACAGAGATGATAAGGGGAATATGATCTGCGAAGGGTACGATGAAGGGCCTAGGCT 248
consensus_9592#0 ATGATCATGTAGT-GCAAGGCAGTAGTTGTATAGAAATGCTCATGTGTAAGAATAATTTT 471
consensus_9592#3 ATGATCATGTAGT-GCAAGGCAGTAGTTGTATAGAAATGCTCATGTGTAAGAATAATTTT 225
** * * ** *
consensus_9592#1 CCCNNTNNNNTTNTNNNNNTGGCCTCGCTNTNTTTTTCTTNTCTTCTTTTCTCTCCTTCC 300
consensus_9592#4 CGGAATGCGGCTGCCGGAGAAGGCCTGCTTTCCCATGGTAAT-TGCCAACATCTGAATTT 297
consensus_9592#2 TGGCATGCGGCTGCCGGAGAAGGCCTGCTTCCCATGGCCTATGGGGGTTCAAGTCACCGA 308
consensus_9592#0 CAAGGTATGGA-ATTCAAGTACACTGAAGAGGCAGTTCTGATGTAGTTCTGTACCCTCTC 530
consensus_9592#3 CAAGGTATGGA-ATTCAAGTACACTGAAGAGGCAGTTCTGATGTAGTTCTGTACCCTCTC 284
* * *
consensus_9592#1 TCTCCCTTCCTTCCCTTNCCGTTCGTCCCTTCCCCTCCGTGGCCGCGCCTGCGTCTCCCG 360
consensus_9592#4 ACTGAATTTTTTCCTGACATGCTGAAAGGA--------GAAAGAAGATTAGCATATGTTG 349
consensus_9592#2 TTTCATCGAGCTGTCGACGCTTCGAGTTTT-------CGAAGACGTCGATTC-TCTGCAG 360
consensus_9592#0 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATA-TATATATATATATATATATATAT 589
consensus_9592#3 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATAT------------------------- 319
*
consensus_9592#1 CCCCCCGGCGCGGCCCCTCCGNCTTTGCTGGCCTGTGTGCCGTGGCGGGGGGGGCGGGGC 420
consensus_9592#4 CCT---GATGAGGATTTTTGTTGTCT---------------------------------- 372
consensus_9592#2 CCC---AGGAAAGATCAGAAGGGGAAGCTCTGAAATAAGGTTTCTGAAATTCAGACATAC 417
consensus_9592#0 ATATATATATATATATATATAGTTTGGCTAATTTTTCAGATTTA--CAATTCTGTGCTTT 647
consensus_9592#3 ----------------ATATAGTTTGGCTAATTTTTCAGATTTA--GAATTCTGTGCTTT 361
consensus_9592#1 GGTCGTCGGGGGGTTGCGGCGGGGGCGCCCGCCGGCNTTGCCTGCCTGGTGTCGCCGCGG 480
consensus_9592#4 ------------------------------------------------------------
consensus_9592#2 AAG-GCCTAAGAATTGCTACATGAATAAGCTGAAACTCTATCCATTTTCATATATACTCA 476
consensus_9592#0 TAAAAACAGTACATTGGTTCATGGAGAACTTGTACATTTGTCCTT--------------- 692
consensus_9592#3 TAAAAACAGTAAATTGGTTCATGGAGAACTTGTAAATTTGTCCTTGTGAAGCAATCAAGA 421
consensus_9592#1 GNCTCTCCTTGCCTCGGTTGGTGGGCGNCGGGGTGCGCGTGGGGGGTGCGGGGGGGTGGG 540
consensus_9592#4 ------------------------------------------------------------
consensus_9592#2 TTATCATTTCTTGCTGATAAATGAGTTTTAGTAT---TGTTCGTCTCAATTATCAACTGG 533
consensus_9592#0 ------------------------------------------------------------
consensus_9592#3 TTCAGAACAGAAAAAAA------------------------------------------- 438
consensus_9592#1 GCGCGTGTTGCGGGTGCGGGGCGGGCGGCCTGGGTGGTGTTTTGTGGCGGGGCGCGGCGG 600
consensus_9592#4 ------------------------------------------------------------
consensus_9592#2 ATCCTTCT---------------------------------------------------- 541
consensus_9592#0 ------------------------------------------------------------
consensus_9592#3 ------------------------------------------------------------
consensus_9592#1 GGCGCCTCG 609
consensus_9592#4 ---------
consensus_9592#2 ---------
consensus_9592#0 ---------
consensus_9592#3 ---------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||