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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9597#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 714 fasta sequence
[AGCTGAACGAGATTGGAAAACAGCAGGCTGTTGTGGTGGCTCGTCGTCTGGCAAGAGAAGCTAGGCCAGCTGCTATATACTCGTCTGATCTAAAACGTGCTGCTGAGACTGCAGAAATCATAGCAAAAGCCTGTGATGTATCAAACTTAATGTTGACTGAAGCACTAAGAGAAAGGCACATGGGATATCTGCAAGGTTTGATGTGGGATGATGCTGTGAATAGAAGCCCAGGCGTTTTCAAAGGCTTCGCTAATTTTGAAGTCAAAAATGGTTTGGACTTTGATGACAGAAACCACGAATTGCCGGGTGGTGGAGAAAGTCTTAATCAGTTAAGTGAGCGGTGCATCTCCTACCTGAACAAAGTTGCTCAGAATCATATCGGGGAGCGGGTGATTGTTGTCGGCCATGGTGCTGCCATACTAGAACTTTGCCGGCACACTGATCCACCCAACAGGTCGATTCGCAGGAAAATTCCCAATACTTCACTGAACATTTTCCGCATTTCCGGCGTCACCGGCCGNTGGATCCTTGAGAGGTGTGGAGATGTCGGCCATCTCAGCGAAAATAGCTTTCTGGAGAACACATTTGGCGGCGATGGAGCCTCTGCCTAACATTAGGCATTAGGCAGAAACATTTAACAGCGACTCATCTTGTCAGTGTATTCAGTGATTCAATTACCCATATGACTGGNAATCTGAAACATTTTTTCCTTTT]
[+] EMBL CB096593 [AGCTGAACGAGATTGGAAAACAGCAGGCTGTTGTGGTGGCTCGTCGTCTGGCAAGAGAAGCTAGGCCAGCTGCTATATACTCGTCTGATCTAAAACGTGCTGCTGAGACTGCAGAAATCATAGCAAAAGCCTGTGATGTATCAAACTTAATGTTGACTGAAGCACTAAGAGAAAGGCACATGGGATATCTGCAAGGTTTGATGTGGGATGATGCTGTGAATAGAAGCCCAGGCGTTTTCAAAGGCTTCGCTAATTTTGAAGTCAAAAATGGTTTGGACTTTGATGACAGAAACCACGAATTGCCGGGTGGTGGAGAAAGTCTTAATCAGTTAAGTGAGCGGTGCATCTCCTACCTGAACAAAGTTGCTCAGAATCATATCGGGGAGCGGGTGATTGTTGTCGGCCATGGTGCTGCCATACTAGAACTTTGCCGGCACACTGATCCACCCAACAGGTCGATTCGCAGGAAAATTCCCAATACTTCACTGAACATTTTCCGCATTTCCGGCGTCACCGGCCGNTGGATCCTTGAGAGGTGTGGAGATGTCGGCCATCTCAGCGAAAATAGCTTTCTGGAGAACACATTTGGCGGCGATGGAGCCTCTGCCTAACATTAGGCATTAGGCAGAAACATTTAACAGCGACTCATCTTGTCAGTGTATTCAGTGATTCAATTACCCATATGACTGGNAATCTGAAACATTTTTTCCTTTT]
consensusID : consensus_9597#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 442 fasta sequence
[TCTTAATCAGTTAAGTGAGCAGGGCATCTCCTACCTGAACAAAGTTGCTCAGAATCATATCGGGGAGCGGGTGATTGTTGTCGGCCATGGTGCTGCCATACTAGAACTCTGCCGGCACACTGATCCACCCAACAGCTCGATTCGTAGGAAAATTCCCAATACTTCACTGAACATTTTCCGCATTTCCGGCGTCACCGGCCGGTGGATCCTTGAGAGGTGTGGAGACGTCGGCCATCTCAGTGAAAATGGCTTTCTGGAGAACGCATTTGGCGGTGATGGAGCCTCTGCCTAACACATTCAGCGACTCATC-TTGTCAGTGTATTCAGTGATTCAATCA-CCCAT-GACTTGAAGTCTGAAACATTTTTC-GTTTTTCTGATTGCTATTTTCTTCGGTGTGATAATCATGATGAATTGATCATAAACTACTCGTTGTTTCGTAAAAA]
[+] EMBL OSR07691A [TCTTAATCAGTTAAGTGAGCAGGGCATCTCCTACCTGAACAAAGTTGCTCAGAATCATATCGGGGAGCGGGTGATTGTTGTCGGCCATGGTGCTGCCATACTAGAACTCTGCCGGCACACTGATCCACCCAACAGCTCGATTCGTAGGAAAATTCCCAATACTTCACTGAACATTTTCCGCATTTCCGGCGTCACCGGCCGGTGGATCCTTGAGAGGTGTGGAGACGTCGGCCATCTCAGTGAAAATGGCTTTCTGGAGAACGCATTTGGCGGTGATGGAGCCTCTGCCTAACACATTCAGCGNCTCATC TTGTCAGTGTATTCAGTGATTCAATCA CCCAT G ]
[+] EMBL OSR07442A [ CTTAATCAGTTAAGTGAGCAGGGCATCTCCTACCTGAACAAAGTTGCTCAGAATCATATCGGGGAGCGGGTGATTGTTGTCGGCCATGGTGCTGCCATACTAGAACTCTGCCGGCACACTGATCCACCCAACAGCTCGATTCGTAGGAAAATTCCCAATACTTCACTGAACATTTTCCGCATTTCCGGCGTCACCGGCCGGTGGATCCTTGAGAGGTGTGGAGACGTCGGCCATCTCAGTGAAAATGGCTTTCTGGAGAACGCATTTGGCGGTGATGGAGCCTCTGCCTAACACATTCAGCGGCTCATCTTTGTCAGTGTATTCAGTGATTCAATCACCCCATGGACTTGAAGTCTGAAACATTTTTCGGTTTTNCTGATTGCTATTT ]
[+] EMBL AU164615 [ TTAATCAGTTAAGTGAGCAGGGCATCTCCTACCTGAACAAAGTTGCTCAGAATCATATCGGGGAGCGGGTGATTGTTGTCGGCCATGGTGCTGCCATACTAGAACTCTGCCGGCACACTGATCCACCCAACAGCTCGATTCGTAGGAAAATTCCCAATACTTCACTGAACATTTTCCGCATTTCCGGCGTCACCGGCCGGTGGATCCTTGAGAGGTGTGGAGACGTCGGCCATCTCAGTGAAAATGGCTTTCTGGAGAACGCATTTGGCGGTGATGGAGCCTCTGCCTAACACATTCAGCGACTCATC TTGTCAGTGTATTCAGTGATTCAATCA CCCAT GACTTGAAGTCTGAAACATTTTTC GTTTTTCTGATTGCTATTTTCTTCGGTGTGATAATCATGATGAATTGATCATAAACTACTCGTTGTTTCGTAAAAA]
[+] EMBL AU162389 [ TTAATCAGTTAAGTGAGCAGGGCATCTCCTACCTGAACAAAGTTGCTCAGAATCATATCGGGGAGCGGGTGATTGTTGTCGGCCATGGTGCTGCCATACTAGAACTCTGCCGGCACACTGATCCACCCAACAGCTCGATTCGTAGGAAAATTCCCAATACTTCACTGAACATTTTCCGCATTTCCGGCGTCACCGGCCGGTGGATCCTTGAGAGGTGTGGAGACGTCGGCCATCTCAGTGAAAATGGCTTTCTGGAGAACGCATTTGGCGGTGATGGAGCCTCTGCCTAACACATTCAGCGACTCATC TTGTCAGTGTATTCAGTGATTCAATCA CCCAT GACTTGAAGTCTGAAACATTTTTC GTTTTTCTGATTGCTATTTTCTTCGGTGTGATAATCATGATGAATTGATCATAAACTACTCGTTGTTTCGTAAAAA]
consensusID : consensus_9597#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 362 fasta sequence
[AATCTTCTCGTTGCTGGCTTCTCGCCGGCGTCTCGCGNTNTATTTCTTTGGCTGAAGCGTCGATTTGGAGCTGGCATCTCAGGTGGCTCATCGTCTGGCAAGAGAAGCTAGGCCAACTGTTGTATACTTGTCTGATTTGAAGCGTGCTGTTGAGACTGCAGAAATCATAGAGAAAGCCTGTGATGTATCAAATATAGTGTTGACTGAAGCACCAAGAGAAAGGCACATGGGATATCTGCAAGGTTTGACATGGGATGACACTATGTGAATAAAAGCCCAGGCGTTTTCAAAGGCTTTGCTAATTTTGAAGTTAAAAATGGTTTGGACTTTGATGGCAGAAACCAAGAATTGCCGCAGAGTCG]
[+] EMBL OS0299A [AATCTTCTCGTTGCTGGCTTCTCGCCGGCGTCTCGCGNTNTATTTCTTTGGCTGAAGCGTCGATTTGGAGCTGGCATCTCAGGTGGCTCATCGTCTGGCAAGAGAAGCTAGGCCAACTGTTGTATACTTGTCTGATTTGAAGCGTGCTGTTGAGACTGCAGAAATCATAGAGAAAGCCTGTGATGTATCAAATATAGTGTTGACTGAAGCACCAAGAGAAAGGCACATGGGATATCTGCAAGGTTTGACATGGGATGACACTATGTGAATAAAAGCCCAGGCGTTTTCAAAGGCTTTGCTAATTTTGAAGTTAAAAATGGTTTGGACTTTGATGGCAGAAACCAAGAATTGCCGCAGAGTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9597#0 AGCTGAACGAGATTGGAAAACAGCAGGCTGTTGTGGTGGCTCGTCGTCTGGCAAGAGAAG 60
consensus_9597#1 ------------------------------------------------------------
consensus_9597#2 ------------------------------------------------------------
consensus_9597#0 CTAGGCCAGCTGCTATATACTCGTCTGATCTAAAACGTGCTGCTGAGACTGCAGAAATCA 120
consensus_9597#1 ------------------------------------------------------------
consensus_9597#2 ------------------------------------------------------------
consensus_9597#0 TAGCAAAAGCCTGTGATGTATCAAACTTAATGTTGACTGAAGCACTAAGAGAAAGGCACA 180
consensus_9597#1 ------------------------------------------------------------
consensus_9597#2 ------------------------------------------------------------
consensus_9597#0 TGGGATATCTGCAAGGTTTGATGTGGGATGATGCTGTGAATAGAAGCCCAGGCGTTTTCA 240
consensus_9597#1 ------------------------------------------------------------
consensus_9597#2 ------------------------------------------------------------
consensus_9597#0 AAGGCTTCGCTAATTTTGAAGTCAAAAATGGTTTGGACTTTGATGACAGAAACCACGAAT 300
consensus_9597#1 ------------------------------------------------------------
consensus_9597#2 ------------------------------------------------------------
consensus_9597#0 TGCCGGGTGGTGGAGAAAGTCTTAATCAGTTAAGTGAGCGGTGCATCTCCTACCTGAACA 360
consensus_9597#1 -------------------TCTTAATCAGTTAAGTGAGCAGGGCATCTCCTACCTGAACA 41
consensus_9597#2 -------------------------------------------AATCTTCTCGTTGCT-- 15
**** ** **
consensus_9597#0 AAGTTGCTCAGAATCATATCGGGGAGCGGGTGATTGTTGTCGGCCATGGTGCTGCCATAC 420
consensus_9597#1 AAGTTGCTCAGAATCATATCGGGGAGCGGGTGATTGTTGTCGGCCATGGTGCTGCCATAC 101
consensus_9597#2 -GGCTTCTCGCCGGCGTCTC-----GCGNTNTATT-TCTTTGGCTGAAGCGTCG----AT 64
* * *** * * ** *** *** * * *** * * * *
consensus_9597#0 TAGAACTTTGCCGGCACACTGATCCACCCAACAGGTCGATTCGCAGGAAAATTCCCAATA 480
consensus_9597#1 TAGAACTCTGCCGGCACACTGATCCACCCAACAGCTCGATTCGTAGGAAAATTCCCAATA 161
consensus_9597#2 TTGGA----GCTGGCATCTCAGGTGGCTCA-----TCGTCTGGCAAGAGAAGCTAGGCCA 115
* * * ** **** * ** *** * * * ** ** *
consensus_9597#0 CTTCACTGAACATTTTCCGCATTTCCGGCGTCACCGGCCGNTGGATCCTTGAGAGGTGTG 540
consensus_9597#1 CTTCACTGAACATTTTCCGCATTTCCGGCGTCACCGGCCGGTGGATCCTTGAGAGGTGTG 221
consensus_9597#2 ACT-GTTGTATACTTGTCTGATTTGAAGCGT-----GCTGTTGAGACTGCAGAAATCATA 169
* ** * * ** * **** **** ** * ** * * *
consensus_9597#0 GAGATGTCGGCCATCTCAGCGAAAATAGCTTT--CTGGAGAACACATTTGGCGGCG-ATG 597
consensus_9597#1 GAGACGTCGGCCATCTCAGTGAAAATGGCTTT--CTGGAGAACGCATTTGGCGGTG-ATG 278
consensus_9597#2 GAGAAAGCCTGTGATGTATCAAATATAGTGTTGACTGAAGCACCAAGAGAAAGGCACATG 229
**** * * ** ** * ** *** ** ** * ** ***
consensus_9597#0 GAGCCTCTGCCTAACATTAGGCATTAGGCAGAAACATTTAACAGCGACTCATCTTGTCAG 657
consensus_9597#1 GAGCCTCTGCCTAACA-----CATT----------------CAGCGACTCATCTTGTCAG 317
consensus_9597#2 GGATATCTGC---------------------------------AAGGTTTGACATGGGAT 256
* ***** * * * ** *
consensus_9597#0 TGTATTCAGTGATTCAATTACCCATATGACTGGNAATCTGAAACATTTTTTCCTTTT--- 714
consensus_9597#1 TGTATTCAGTGATTCAATCACCCAT--GACTTGAAGTCTGAAACATTTTTCGTTTTTCTG 375
consensus_9597#2 GACACTATGTGAATAAAA-GCCCAGGCGTTTTCAAAGGCTTTGCTAATTTTGAAGTTAAA 315
* * **** * ** **** * * * * *** **
consensus_9597#0 ------------------------------------------------------------
consensus_9597#1 ATTGCTATTTTCTTCGGTGTGATAATCATGATGAATTGATCATAAACTACTCGTTGTTTC 435
consensus_9597#2 AATGGTTTGGACTTTGATGGCAGAA--ACCAAGAATTG-CCGCAGAGTCG---------- 362
consensus_9597#0 -------
consensus_9597#1 GTAAAAA 442
consensus_9597#2 -------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||