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Oryza sativa
cluster # 9611 cluster # 9611       Sequences # 6       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9611#0 length = 830 sequences # 4  
consensus_9611#1 length = 549 sequences # 1  
consensus_9611#2 length = 390 sequences # 1  

consensusID : consensus_9611#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 830
fasta sequence
                              [TTTTTTTTTTTTTTTT---TG-ACAAAACTGCTCATGTTTTATAAGACGAACAACAGTATATACACCAAATGAATTCGATGGTAGCAACCATCGCTAGTGTAAGACGACGAGAACTGCGAAAAGGCGTCCCCTGTCCCCAAAAAGTGCCTTGAACAAGAAAGGTAGTTCTGTATGGTCAACCAGATTAGAGTTATATCTTCTTCTGTGTTAGCATAATTCATCGGTACACCCTGAGGACGCCATTTCGGGATGCCAATGGTGCAGATGCGCCCGGAGGTTGGTCACCGAAGAACTAATGTTACTGCAAGTATGCTCCTGGACCACCAATCAAGCTTCGGTAATGACATCAGCATATTGAGGATTGTTGGAGTTATATTGTGCTTCCATCAGACAATCCTGCTCTAACTGCGGAAAATCATAATCTTGAACACTCAAAGGAGGGCCCATTTGACCATCATTCTCAAATGGTGGAAGTATTGGGTCTAGGTTATCATCAAACAGAAGCTGCATGTCGTTATCATCCCATTCATGTAGAGTAGAGTTATCAGCGAAAGGCTCCTCAGATGAACCGAGAGTATCAGCAACGTTAGACGTTTGCATGTCCATGGGTGTGGCAACTGCAGGACTTGGAACTGGTTGTGAGTTGGCCGAACAAATGGCTCCTTCCACTGGATTTACTTGACCTGATGTTTCTGGGACAGGTGGGAGATATTCAACAATATGTGCCCCACGGCCAGAGGTCTCCTGATCAGTTACAGGGCCCTGCTCAAGAGCATGAAATCTCCTTTTCTTGCTTCCATCAGGACTCCACCAGTTGGATCTGCGCTGCTGCT]

[-] EMBL AU166382             [TTTTTTTTTTTTTTTTAAATGTACAAAACTGCTCATGTTTTATAAGACGAACAACAGTNTATACACCAAATGAATTCGATGGTAGCAACCATCGCTAGTGTAAGACGACGAGAACTGCGAAAAGGCGTCCCCTGTCCCCAAAAAGTGCCTTGAACAANAAAGGTAGTTCTGTATGGTCAACCAGATTAGAGTTATATCTTCTTCTGNGTTAGCATAATTCATCGGTACACCCTGAGGACGCCATTTCGGGATGCCAATGGTGCANATGCGCCCGGAGGTTGGTCACCGAAGAACTAATGTTACTGCAAGTATGCTCCTGGACCACCAATCAAGCTTCGGTAATGACATCAGCATATTGAGGATTGTTGGAGTTATATTGNGCTTCCATCAGACAATCCTGCTCTAACTGCGGAAAATCATAATCTTGAACACTCAAA                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CB667904             [      tcTTTTTTTT   TG ACAAAACTGCTCATGTTTTATAAGACGAACCTCAGTATATACACCAAATGAATTCGATGGTAGCAACCATCGATAGTGTAAGACGACGAGAACTGCGAAAAGGCGTCCCCTGTCCCCAAAAAGTGCCTTGAACAAGAAAGGTAGTTCTGTATGGTCAACCAGATTAGAGTTATATCTTCTTCTGTGTTAGCATAATTCATCGGTACACCCTGAGGACGCCATTTCGGGATGCCAATGGTGCAGATGCGCCCGGAGGTTGGTCACCGAAGAACTAATGTTACTGCAAGTATGCTCCTGGACCACCAATCAAGCTTCGGTAATGACATCAGCATATTGAGGATTGTTGGAGTTATATTGTGCTTCCATCAGACAATCCTGCTCTAACTGCGGAAAATCATAATCTTGAACACTCAAAGGAGGGCCCATTTGACCATCATTCTCAAATGGTGGAAGTATTGGGTCTAGGTTATCATCAAACAGAAGCTGCATGTCGTTATCATCCCATTCATGTAGAGTAGAGTTATCAGCGAAAGGCTCCTCAGATGAACCGAGAGTATCAGCAACGTTAGACGTTTGCATGTCCATGGGTGTGGCAACTGCAGGACTTGGAACTGGTTGTGAGTTGGCCGAACAAATGGCTCCTTCCACTGGATTTACTTGACCTGATGTTTCTGGGACAGGTGGGAGATATTCAACAATATGTGCCCCACGGCCAGAGGTCTCCTGATCAGTTACAGGGCCCTGCTCAAGAGCATGAAATCTCCTTTTCTTGCTTCCATCAGGACTCCACCAGTTGGATCTGCGCTGCTGCT]
[+] EMBL CB663983             [                              GCTCATGTTTTATAAGACGAACAACAGTATATACACCAAATGAATTCGATGGTAGCAACCATCGCTAGTGTAAGACGACGAGAACTGCGAAAAGGCGTCCCCTGTCCCCAAAAAGTGCCTTGAACAAGAAAGGTAGTTCTGTATGGTCAACCACATTAGAGTTATATCTTCTTCTGTGTTAGCATAATTCATCGGTACACCCTGAGGACGCCATTTCGGGATGCCAATGGTGCAGATGCGCCCGGAGGTTGGTCACCGAAGAACTAATGTTACTGCAAGTATGCTCCTGGACCACCAATCAAGCTTCGGTAATGACATCAGCATATTGAGGATTGTTGGAGTTATATTGTGCTTCCATCAGACAATCCTGCTCTAACTGCGGAAAATCATAATCTTGAACACTCAAAGGAGGGCCCATTTGACCATCATTCTCAAATGGTGGAAGTATTGGGTCTAGGTTATCATCAAACAGAAGCTGCATGTCGTTATCATCCCATTCATGTAGAGTAGAGTTATCAGCGAAAGGCTCCTCAGATGAACCGAGAGTATCAGCAACGTTAGACGTTTGCATGTCCATGGGTGTGGCAACTGCAGGACTTGGAACTGGTTGTGAGTTGGCCGAACAAATGGCTCCTTCCACTGGATTTACTTGACCTGATGTTTCTGGGACAGGTGGGAGATATTCAACAATATGTGCCCCACGGCCAGAGGTCTCCTGATCAGTTACAGGGCCCTGCTCAAGAGCATGAAATCTCC                                                ]
[-] EMBL CA998316             [                                                                                                                                                                                                                                                                   GTGCAGATGCGCCCGGAGGTTGGTCACCGAAGAACTAATGTTACTGCAAGTATGCTCCTGGACCACCAATCAAGCTTCGGTAATGACATCAGCATATTGAGGATTGTTGGAGTTATATTGTGCTTCCATCAGACAATCCTGCTCTAACTGCGGAAAATCATAATCTTGAACACTCAAAGGAGGGCCCATTTGACCATCATTCTCAAATGGTGGAAGTATTGGGTCTAGGTTATCATCAAACAGAAGCTGCATGTCGTTATCATCCCATTCATGTAGAGTAGAGTTATCAGCGAAAGGCTCCTCAGATGAACCGAGAGTATCAGCAACGTTAGACGTTTGCATGTCCATGGGTGTGGCAACTGCAGGACTTGGAACTGGTTGTGAGTTGGCCGAACAAATGGCTCCTTCCACTGGATTTACTTGACCTGATGTTTCTG                                                                                                                                          ]


>consensus_9611#0 TTTTTTTTTTTTTTTTTGACAAAACTGCTCATGTTTTATAAGACGAACAACAGTATATAC ACCAAATGAATTCGATGGTAGCAACCATCGCTAGTGTAAGACGACGAGAACTGCGAAAAG GCGTCCCCTGTCCCCAAAAAGTGCCTTGAACAAGAAAGGTAGTTCTGTATGGTCAACCAG ATTAGAGTTATATCTTCTTCTGTGTTAGCATAATTCATCGGTACACCCTGAGGACGCCAT TTCGGGATGCCAATGGTGCAGATGCGCCCGGAGGTTGGTCACCGAAGAACTAATGTTACT GCAAGTATGCTCCTGGACCACCAATCAAGCTTCGGTAATGACATCAGCATATTGAGGATT GTTGGAGTTATATTGTGCTTCCATCAGACAATCCTGCTCTAACTGCGGAAAATCATAATC TTGAACACTCAAAGGAGGGCCCATTTGACCATCATTCTCAAATGGTGGAAGTATTGGGTC TAGGTTATCATCAAACAGAAGCTGCATGTCGTTATCATCCCATTCATGTAGAGTAGAGTT ATCAGCGAAAGGCTCCTCAGATGAACCGAGAGTATCAGCAACGTTAGACGTTTGCATGTC CATGGGTGTGGCAACTGCAGGACTTGGAACTGGTTGTGAGTTGGCCGAACAAATGGCTCC TTCCACTGGATTTACTTGACCTGATGTTTCTGGGACAGGTGGGAGATATTCAACAATATG TGCCCCACGGCCAGAGGTCTCCTGATCAGTTACAGGGCCCTGCTCAAGAGCATGAAATCT CCTTTTCTTGCTTCCATCAGGACTCCACCAGTTGGATCTGCGCTGCTGCT



consensusID : consensus_9611#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 549
fasta sequence
                              [TTTTTTGATACGCAAGGTAAATGTACAAAACTGCTCATGTTTTATAAGACGAACAACAGTATATACACCAAATGAATTCGATGGTAGCAACCATCGCTAGTGTAAGACGACGAGAACTGCGAAAAGGCGTCCCCTGTCCCCAAAAAGTGCCTTGAACAAGAAAGGTAGTTCTGTATGGTCAACCAGATTAGAGTTATATCTTCTTCTGTGTTAGCATAATTCATCGGTACACCCTGAGGACGCCATTTCGGGATGCCAATGGTGCAGATGCGCCCGGAGGTTGGTCACCGAAGAACTAATGTTACTTGAAGTATGCTCCTGGACCACCAATCAAGCTTCGGTAATGACATCAGCATATTTGAGGATTTGTTTGGAGTTATATTTGTGCTTCCATCAGACAATCCTGTCTAACTGCGGAAAATCATAATCTTGAACACTCAAAGGAGGGCCATTTGACCATCATTCTCAAAGTGGTGTGAAAGTATTGGGTCTAGAGTATCATCAAAAAAGAAAGCTGATGTCGTTATCATCCCATTCATGTAGAGTAGA]

[-] EMBL BI810442             [TTTTTTGATACGCAAGGTAAATGTACAAAACTGCTCATGTTTTATAAGACGAACAACAGTATATACACCAAATGAATTCGATGGTAGCAACCATCGCTAGTGTAAGACGACGAGAACTGCGAAAAGGCGTCCCCTGTCCCCAAAAAGTGCCTTGAACAAGAAAGGTAGTTCTGTATGGTCAACCAGATTAGAGTTATATCTTCTTCTGTGTTAGCATAATTCATCGGTACACCCTGAGGACGCCATTTCGGGATGCCAATGGTGCAGATGCGCCCGGAGGTTGGTCACCGAAGAACTAATGTTACTTGAAGTATGCTCCTGGACCACCAATCAAGCTTCGGTAATGACATCAGCATATTTGAGGATTTGTTTGGAGTTATATTTGTGCTTCCATCAGACAATCCTGTCTAACTGCGGAAAATCATAATCTTGAACACTCAAAGGAGGGCCATTTGACCATCATTCTCAAAGTGGTGTGAAAGTATTGGGTCTAGAGTATCATCAAAAAAGAAAGCTGATGTCGTTATCATCCCATTCATGTAGAGTAGA]


>consensus_9611#1 TTTTTTGATACGCAAGGTAAATGTACAAAACTGCTCATGTTTTATAAGACGAACAACAGT ATATACACCAAATGAATTCGATGGTAGCAACCATCGCTAGTGTAAGACGACGAGAACTGC GAAAAGGCGTCCCCTGTCCCCAAAAAGTGCCTTGAACAAGAAAGGTAGTTCTGTATGGTC AACCAGATTAGAGTTATATCTTCTTCTGTGTTAGCATAATTCATCGGTACACCCTGAGGA CGCCATTTCGGGATGCCAATGGTGCAGATGCGCCCGGAGGTTGGTCACCGAAGAACTAAT GTTACTTGAAGTATGCTCCTGGACCACCAATCAAGCTTCGGTAATGACATCAGCATATTT GAGGATTTGTTTGGAGTTATATTTGTGCTTCCATCAGACAATCCTGTCTAACTGCGGAAA ATCATAATCTTGAACACTCAAAGGAGGGCCATTTGACCATCATTCTCAAAGTGGTGTGAA AGTATTGGGTCTAGAGTATCATCAAAAAAGAAAGCTGATGTCGTTATCATCCCATTCATG TAGAGTAGA



consensusID : consensus_9611#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 390
fasta sequence
                              [TTTTTTTTTTGGCATGAAACATGCACNTAGAAACTCCACAGTTAACTAAAATGACATCACGCTTGTTTTCCACAAAATGATGAACAAAAACATAGGGTATACAGTAATTAGTCATTACCATATTGAGGATTGTTGGAGTTATATTGTGCTTCCATCAGACAATCCTGCTCTAACTGCGGAAAATCATAATCTTGAACACTCAAAGGAGGGCCCATTTGACCATCATTCTCAAATGGTGGAAGTATTGGGTCTAGGTTATCATCAAACAGAAGCTGCATGTCGTTATCATCCCATTCATGTAGAGTAGAGTTATACAGCGAAAGGCTCCTCAGATGAACCGAGAGTATCAGCAACGTTAGACGTTTGCATGTCCATGGGTGTGGCAACTGC]

[-] EMBL BM422063             [TTTTTTTTTTGGCATGAAACATGCACNTAGAAACTCCACAGTTAACTAAAATGACATCACGCTTGTTTTCCACAAAATGATGAACAAAAACATAGGGTATACAGTAATTAGTCATTACCATATTGAGGATTGTTGGAGTTATATTGTGCTTCCATCAGACAATCCTGCTCTAACTGCGGAAAATCATAATCTTGAACACTCAAAGGAGGGCCCATTTGACCATCATTCTCAAATGGTGGAAGTATTGGGTCTAGGTTATCATCAAACAGAAGCTGCATGTCGTTATCATCCCATTCATGTAGAGTAGAGTTATACAGCGAAAGGCTCCTCAGATGAACCGAGAGTATCAGCAACGTTAGACGTTTGCATGTCCATGGGTGTGGCAACTGC]


>consensus_9611#2 TTTTTTTTTTGGCATGAAACATGCACNTAGAAACTCCACAGTTAACTAAAATGACATCAC GCTTGTTTTCCACAAAATGATGAACAAAAACATAGGGTATACAGTAATTAGTCATTACCA TATTGAGGATTGTTGGAGTTATATTGTGCTTCCATCAGACAATCCTGCTCTAACTGCGGA AAATCATAATCTTGAACACTCAAAGGAGGGCCCATTTGACCATCATTCTCAAATGGTGGA AGTATTGGGTCTAGGTTATCATCAAACAGAAGCTGCATGTCGTTATCATCCCATTCATGT AGAGTAGAGTTATACAGCGAAAGGCTCCTCAGATGAACCGAGAGTATCAGCAACGTTAGA CGTTTGCATGTCCATGGGTGTGGCAACTGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9611#0      TTTTTTTTTTT------TTTTTTGACAAAACTGCTCATGTTTTATAAGACGAACAACAGT 54
consensus_9611#1      TTTTTTGATACGCAAGGTAAATGTACAAAACTGCTCATGTTTTATAAGACGAACAACAGT 60
consensus_9611#2      ------------------------------------------------------------
                                                                                  

consensus_9611#0      ATATACACCAAATGAATTCGATGGTAGCAACCATCGCTAGTGTAAGACGACGAGAACTGC 114
consensus_9611#1      ATATACACCAAATGAATTCGATGGTAGCAACCATCGCTAGTGTAAGACGACGAGAACTGC 120
consensus_9611#2      ------------------------------------------------------------
                                                                                  

consensus_9611#0      GAAAAGGCGTCCCCTGTCCCCAAAAAGTGCCTTGAACAAGAAAGGTAGTTCTGTATGGTC 174
consensus_9611#1      GAAAAGGCGTCCCCTGTCCCCAAAAAGTGCCTTGAACAAGAAAGGTAGTTCTGTATGGTC 180
consensus_9611#2      ------------------------------------------------------------
                                                                                  

consensus_9611#0      AACCAGATTAGAGTTATATCTTCTTCTGTGTTAGCATAATTCATCGGTACACCCTGAGGA 234
consensus_9611#1      AACCAGATTAGAGTTATATCTTCTTCTGTGTTAGCATAATTCATCGGTACACCCTGAGGA 240
consensus_9611#2      -----------------------------------------------------------T 1
                                                                                  

consensus_9611#0      CGCCATTTCGGGATGCCAATGGTGCAGATGCGCCCGGAGGTTGGTCACCGAAGAACTAAT 294
consensus_9611#1      CGCCATTTCGGGATGCCAATGGTGCAGATGCGCCCGGAGGTTGGTCACCGAAGAACTAAT 300
consensus_9611#2      TTTTTTTTTGGCATGAAACATGCACNTAGAAACTCCACAGTTAACTAAAATGACATCACG 61
                           *** ** ***  *   *  *  *    * *    ***    *       *  *  

consensus_9611#0      GTTACTGCAAGTATGCTCCTGGACCACCAATCAAGCTT--CGGTAATGA--CATCAGCAT 350
consensus_9611#1      GTTACTTGAAGTATGCTCCTGGACCACCAATCAAGCTT--CGGTAATGA--CATCAGCAT 356
consensus_9611#2      CTTGTTTTCCACAAAATGATGAACAAAAACATAGGGTATACAGTAATTAGTCATTACCAT 121
                       **  *      *   *  ** ** *  *   * * *   * ***** *  *** * ***

consensus_9611#0      ATT-GAGGATTG--TTGGAGTTATATT-GTGCTTCCATCAGACAATCCTGCTCTAACTGC 406
consensus_9611#1      ATTTGAGGATTTGTTTGGAGTTATATTTGTGCTTCCATCAGACAATCCTG-TCTAACTGC 415
consensus_9611#2      ATT-GAGGATTG--TTGGAGTTATATT-GTGCTTCCATCAGACAATCCTGCTCTAACTGC 177
                      *** *******   ************* ********************** *********

consensus_9611#0      GGAAAATCATAATCTTGAACACTCAAAGGAGGGCCCATTTGACCATCATTCTCAAA-TGG 465
consensus_9611#1      GGAAAATCATAATCTTGAACACTCAAAGGAGGGCC-ATTTGACCATCATTCTCAAAGTGG 474
consensus_9611#2      GGAAAATCATAATCTTGAACACTCAAAGGAGGGCCCATTTGACCATCATTCTCAAA-TGG 236
                      *********************************** ******************** ***

consensus_9611#0      TG--GAAGTATTGGGTCTAGGTTATCATCAAACAG--AAGCTGCATGTCGTTATCATCCC 521
consensus_9611#1      TGTGAAAGTATTGGGTCTAGAGTATCATCAAAAAAGAAAGCTG-ATGTCGTTATCATCCC 533
consensus_9611#2      TG--GAAGTATTGGGTCTAGGTTATCATCAAACAG--AAGCTGCATGTCGTTATCATCCC 292
                      **   ***************  ********** *   ****** ****************

consensus_9611#0      ATTCATGTAGAGTAGAGTTATCAGCGAAAGGCTCCTCAGATGAACCGAGAGTATCAGCAA 581
consensus_9611#1      ATTCATGTAGAGTAGA-------------------------------------------- 549
consensus_9611#2      ATTCATGTAGAGTAGAGTTATACAGCGAAAGGCTCCTCAGATGAACCGAGAGTATCAGCA 352
                      ****************                                            

consensus_9611#0      CGTTAGACGTTTGCATGTCCATGGGTGTGGCAACTGCAGGACTTGGAACTGGTTGTGAGT 641
consensus_9611#1      ------------------------------------------------------------
consensus_9611#2      ACGTTAGACGTTTGCATGTCCATGGGTGTGGCAACTGC---------------------- 390
                                                                                  

consensus_9611#0      TGGCCGAACAAATGGCTCCTTCCACTGGATTTACTTGACCTGATGTTTCTGGGACAGGTG 701
consensus_9611#1      ------------------------------------------------------------
consensus_9611#2      ------------------------------------------------------------
                                                                                  

consensus_9611#0      GGAGATATTCAACAATATGTGCCCCACGGCCAGAGGTCTCCTGATCAGTTACAGGGCCCT 761
consensus_9611#1      ------------------------------------------------------------
consensus_9611#2      ------------------------------------------------------------
                                                                                  

consensus_9611#0      GCTCAAGAGCATGAAATCTCCTTTTCTTGCTTCCATCAGGACTCCACCAGTTGGATCTGC 821
consensus_9611#1      ------------------------------------------------------------
consensus_9611#2      ------------------------------------------------------------
                                                                                  

consensus_9611#0      GCTGCTGCT 830
consensus_9611#1      ---------
consensus_9611#2      ---------
                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)