These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9618#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 838 fasta sequence [TCTCTCCTCGCGCCGCCTCCCCAACTAACCTTCCTCTTGCGGCGGCGGCGGCGGCGCCACTGCCGGAGAAGAAACCCGACCGCGCCTCGCCTCGCCGAGCGGCGAAGCGGCATAGGGCGGTAGCGGCGGCACATGGAGGGGGTGAACGGCGGGGCGGTGGAGGAGGAGAGGAAGCCGCTGTCGGAGGTGGTGGGCGACTGCGTGCAGCGCTGGTTCCAGGACGCGCTCAAGGAGGCCCGCCGCGGCGACTCCGCCATGCAGGTGCTCGTCGCGCAGATGTACCACTCCGGCTACGGCATCCCCAAGAACGAGCACAAGGGAAGAGCGTGGGCTGAGAAGGCATCTAGATACAGGCC-TTCAGTCTGGAAAGTTGGCACAAAGCGTCCGGGATATAATGCC-AGTGACTCAGATTCTGATGAAATGAATGATGATGAGAAGCAATA-ACAATGAAAGAATCAATTGTGAGTTTAGATAGAAGAATG-GCAGGGTAATGATAAATCTGGTTGTCAAACCCT-CGT-C-AATTTT-ACCAATTTGTGTGAGATTGGGGCTTCTTTCGGCTGGAGTCTGCCATGTGAGCTATCAAGTAAATTTTGTAAAACCGTTTGGATAC-TTG-GAACACACAATGTATTCAATATTGCCCCAAAAACAGAGGGAAAAATGTCAATTTAGTGGTGCTTGGTGCTTACAGGTTCATTATTTCAAACTTAGCTAGTTTGAGTCCATTTTATGGGTTCTTGCTTGCATATGCTTCAGGTTCCCCATGGTGAACAGTCTTGTATTGGTTTATGGGCTAAATGGT--TGTCTGCCGAGTTACAACAAAAAATCTTTTCCTAAAAAA] [+] EMBL AK064169 [TCTCTCCTCGCGCCGCCTCCCCAACTAACCTTCCTCTTGCGGCGGCGGCGGCGGCGCCACTGCCGGAGAAGAAACCCGACCGCGCCTCGCCTCGCCGAGCGGCGAAGCGGCATAGGGCGGTAGCGGCGGCACATGGAGGGGGTGAACGGCGGGGCGGTGGAGGAGGAGAGGAAGCCGCTGTCGGAGGTGGTGGGCGACTGCGTGCAGCGCTGGTTCCAGGACGCGCTCAAGGAGGCCCGCCGCGGCGACTCCGCCATGCAGGTGCTCGTCGCGCAGATGTACCACTCCGGCTACGGCATCCCCAAGAACGAGCACAAGGGAAGAGCGTGGGCTGAGAAGGCATCTAGATACAGGCC TTCAGTCTGGAAAGTTGGCACAAAGCGTCCGGGATATAATGCC AGTGACTCAGATTCTGATGAAATGAATGATGATGAGAAGCAATA ACAATGAAAGAATCAATTGTGAGTTTAGATAGAAGAATG GCAGGGTAATGATAAATCTGGTTGTCAAACCCT CGT C AATTTT ACCAATTTGTGTGAGATTGGGGCTTCTTTCGGCTGGAGTCTGCCATGTGAGCTATCAAGTAAATTTTGTAAAACCGTTTGGATAC TTG GAACACACAATGTATTCAATATTGCCCCAAAAACAGAGGGAAAAATGTCAATTTAGTGGTGCTTGGTGCTTACAGGTTCATTATTTCAAACTTAGCTAGTTTGAGTCCATTTTATGGGTTCTTGCTTGCATATGCTTCAGGTTCCCCATGGTGAACAGTCTTGTATTGGTTTATGGGCTAAATGGT TGTCTGCC ] [+] EMBL C29118 [ CCAACTAACCTTCCTCTTGCGGCGGCGGCGTCGGCG CACTNCCGGANAAGAAACCCGACCGCNCCTCGCCTCGCCGAGCGGCGAA NGGCATAGGGCGGTAG GGCGGCACATGGAGGGGGTNAACGGCGGGGCGGTGGAGGAGGAGAGGAAGCCGCTGTCGGAGGTGGTGGGCGACTGCTTGCAGCNTNGGTTCCAGGACGCGCTCAAGGAGGCCCGCCGCGGCGACTCCGCCATGCAGGTGCTCGTCGCGCAGATGTACCACTCCGGCTACGGCATCCCCAAGAACGAGCACAA ] [+] EMBL BI795629 [ ATACAGCCCTTTCAGTCTGGAAAGTGGCCACAAAGCGTCCGGGATATAATGCCAAGTGACTCAGATTCTGATGAAATGAATGATGATGAGAACCAATACAC ATGAAAGAATCAATTGTGAGTTTAGATAGAAGAATGCGCAGGGTAATGATAAATCTGGTTGTCAAACCCTGCGTGCAAATTTTGACC ATTTGTGTGAGATTGGGGCTTCTTTCGGCTGGAGTCTGCCATGTGAGCTATCAAGTAAATTTTGTAAAACCGTTTGGATAC TTG GAACACAC ATGTATTCAATATTGCCCCAAAAACAGAGGGAAAAATGTC ATTTAGTGGTGCTTGGTGCTTACAGGTTCACTATTTCAAACTTAGCTAGTTTGAGTCCATTTTATGGGTTCTTGCTTGCATATGCTTCAGGTTCCCCATGGTGAACAGTCTTGTATTGGTTTATGGGCTAAATGGTTGTGTCTGCCGAGTTACAACAAAAAA ] [+] EMBL AU172391 [ AGATTCTGATGAAATGAATGATGATGAGAAGCAATA ACAATGAAAGAATCAATTGTGAGTTTAGATAGAAGAATG GCAGGGTAATGATAAATCTGGTTGTCAAACCCT CGT C AATTTT ACCAATTTGTGTGAGATTGGGGCTTCTTTCGGCTGGAGTCTGCCATGTGAGCTATCAAGTAAATTTTGTAAAACCGTTTGGATAC TTG GAACACACAATGTATTCAATATTGCCCCAAAAACAGAGGGAAAAATGTCAATTTAGTGGTGCTTGGTGCTTACAGGTTCATTATTTCAAACTTAGCTAGTTTGAGTCCATTTTATGGGTTCTTGCTTGCATATGCTTCAGGTTCCCCATGGTGAACAGTCTTGTATTGGTTTATGGGCTAAATGGT TGTCTGCCGAGTTACAACATTCTTTCTTTTCCTAAAAAA] [+] EMBL OSC21061 [ GAGCTATCAAGTAAATTTTGTAAAACCGTTTGAATACATTGTGTGTTC CAA GTATCCAATATTGCCCCAAAAACAGAGGGAAAAATGTCAATTTAGTGGTGCTTGGTGCTTACAGGTTCATTATTTCAAACTTAGCTAGTTTGAGTCCATTTTATGGGTTCTTGCTTGCATATGCTTCAGGTTCCCCATGGTGAACAGTCTTGTATTGGTTTATGGGCTAAATGGT TGTCT ] consensusID : consensus_9618#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 172 fasta sequence [AGAGGACGAGACAAGGGGGCTTACAGGTTCCCTATTTCAAACTAAACTAGTTTGAGTCCATTTTATGGGTTCTTGCTTGCATATGCTTCAGGTTCCCCATGGTGAACAGTCTTGTATTGGTTTATGGGCTAAATGGTTGTGTCTGCCGAGTTCCAACAAAAAAAAAAAAAAA] [-] EMBL CA760920 [AGAGGACGAGACAAGGGGGCTTACAGGTTCCCTATTTCAAACTAAACTAGTTTGAGTCCATTTTATGGGTTCTTGCTTGCATATGCTTCAGGTTCCCCATGGTGAACAGTCTTGTATTGGTTTATGGGCTAAATGGTTGTGTCTGCCGAGTTCCAACAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9618#0 TCTCTCCTCGCGCCGCCTCCCCAACTAACCTTCCTCTTGCGGCGGCGGCGGCGGCGCCAC 60 consensus_9618#1 ------------------------------------------------------------ consensus_9618#0 TGCCGGAGAAGAAACCCGACCGCGCCTCGCCTCGCCGAGCGGCGAAGCGGCATAGGGCGG 120 consensus_9618#1 ------------------------------------------------------------ consensus_9618#0 TAGCGGCGGCACATGGAGGGGGTGAACGGCGGGGCGGTGGAGGAGGAGAGGAAGCCGCTG 180 consensus_9618#1 ------------------------------------------------------------ consensus_9618#0 TCGGAGGTGGTGGGCGACTGCGTGCAGCGCTGGTTCCAGGACGCGCTCAAGGAGGCCCGC 240 consensus_9618#1 ------------------------------------------------------------ consensus_9618#0 CGCGGCGACTCCGCCATGCAGGTGCTCGTCGCGCAGATGTACCACTCCGGCTACGGCATC 300 consensus_9618#1 ------------------------------------------------------------ consensus_9618#0 CCCAAGAACGAGCACAAGGGAAGAGCGTGGGCTGAGAAGGCATCTAGATACAGGCCTTCA 360 consensus_9618#1 ------------------------------------------------------------ consensus_9618#0 GTCTGGAAAGTTGGCACAAAGCGTCCGGGATATAATGCCAGTGACTCAGATTCTGATGAA 420 consensus_9618#1 ------------------------------------------------------------ consensus_9618#0 ATGAATGATGATGAGAAGCAATAACAATGAAAGAATCAATTGTGAGTTTAGATAGAAGAA 480 consensus_9618#1 ------------------------------------------------------------ consensus_9618#0 TGGCAGGGTAATGATAAATCTGGTTGTCAAACCCTCGTCAATTTTACCAATTTGTGTGAG 540 consensus_9618#1 ------------------------------------------------------------ consensus_9618#0 ATTGGGGCTTCTTTCGGCTGGAGTCTGCCATGTGAGCTATCAAGTAAATTTTGTAAAACC 600 consensus_9618#1 ------------------------------------------------------------ consensus_9618#0 GTTTGGATACTTGGAACACACAATGTATTCAATATTGCCCCAAAAACAGAGGGAAAAATG 660 consensus_9618#1 ------------------------------------------------------------ consensus_9618#0 TCAATTTAGTGGTGCTTGGTGCTTACAGGTTCATTATTTCAAACTTAGCTAGTTTGAGTC 720 consensus_9618#1 --AGAGGACGAGACAAGGGGGCTTACAGGTTCCCTATTTCAAACTAAACTAGTTTGAGTC 58 * * * ** ************ *********** * ************ consensus_9618#0 CATTTTATGGGTTCTTGCTTGCATATGCTTCAGGTTCCCCATGGTGAACAGTCTTGTATT 780 consensus_9618#1 CATTTTATGGGTTCTTGCTTGCATATGCTTCAGGTTCCCCATGGTGAACAGTCTTGTATT 118 ************************************************************ consensus_9618#0 GGTTTATGGGCTAAATGGTTGT--CTGCCGAGTTACAACAAAAAATCTTTTCCTAAAAAA 838 consensus_9618#1 GGTTTATGGGCTAAATGGTTGTGTCTGCCGAGTTCCAACAAAAAAAA------AAAAAAA 172 ********************** ********** ********** ****** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||