These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9626#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1517 fasta sequence [AATTATTAATTTACTTTTGACCATTACTAATTAGCCATTACAATCCAGCAAAACTAAGTCGGCAGGCAGCAGATAAATTAAACCACGCGCGCGCGGTATACACTTGTGAACACGTACGTAGGCGGGAAAGAAGAAGGAAAACGCAACAAAATTAATGGAGCATCCAACTAAGTTGATTTCGCCTAAACTAAAGCTGCATCTACTATTACTAGCTGCTAATTAACAACGCACTAACTATAATAAACATGCTAAGTGGACTAGCTAGCTAAGCTAAGCTACTACAGTACTCCTCTCCCACTTGACCACCTCAGCTTCCTCCTCCTTTCTCATACTAAGAAAGAATTCAGAGTCAAATTTCTCAGCCACCTCGCCTATATATACATCCCATGCCTAGCTTAATTCCATCATCCATCATCACACAGCTCACTGACCAGCAGCTCAGCCTCATCACTCACGAGCAATCAGCTAGCTAGCTTAGCTTGATCACTACACCTCCATAGATCTTAGCTTAATTAGCTTAGATTATACAAGTGGTCAAGTCAAGAACTGTACCAATGGCATCATCAATGGCGCCTGCAGCAGCAATGGCGATCCTCCTCCTGGCGCTTCTCATGCCCGCCACGCTGTGCTCCCGCTCAGGGCCGCCCTCGTCCAAGCACGGCCACGGCGGCCACGCCAAGCGCGCGCCGCCGCCGGCGTCGCCCGTGGTGCCGGTGGCGCCTCAGGCCGCGGCGCTGGTGCGCGCCACCTGCAACTCCACCGCCTACTACGACGTGTGCGTGTCGGCGCTCGCCGCCGACCCGTCGAGCACCACGGCCGACGTGCGCGGGCTCTCCGCCATCGCCGTGTCCGTGGCCGCGGCGAACGCGTCCGGCGCGGCGCAGGCGGCGGCGGCGCTGGCCAACGGCACGGCGCCCCTCGCCGCCGCTGCCGCCGGCGACGGCACCGTGCAGGCGCTGCTCCGCGCGTGCGCCGGCAAGTACGGCGACGCGCGCGACGCGCTGGCGGCGGCGAAGGAGTCGATGGGGCAGCA-GGACTACGACCTGGCGACGGTGCACGTGAGCGCCGGCGCCGAATACCCGCAGGTGTGCAAGGCGCTGTTCCGGCGGCAGAGGCCCGGGGCGTACCCGGCGGAGCTGGCGGCGAGGGAGGAGGCGCTCAACAAGCTCTGCTCCGTCGCGCTCGACATCATCGCCCTCCTCACCTCCTCTCCTGCATCCAACAACAACAACAGCTAGAGCTAGATACGTATAAATACGGTATAATACTACTAGTACTGCATGCGTACGTGCTAAATACGTGTAATGACATGTATTTGGTAGTAACTAGTTAATCCTGTGTGGTGCTGAGTGAGGATATATATGTTCTTCTTGTATTACTAAGTATAGATGAGTTAATTACTGCCGTGCTGAAGCTTAGCATGCTGCATCTTGTACTTCACTTTGGCTCCAGTATAATTAGTCACTATTCATTTTTGTTGAATTAAAATGATCTGAATATGTGCCCCCCCTGGTTTT] [+] EMBL CB682017 [AATTATTAATTTACTTTTGACCATTACTAATTAGCCATTACAATCCAGCAAAACTAAGTCGGCAGGCAGCAGATAAATTAAACCACGCGCGCGCGGTATACACTTGTGAACACGTACGTAGGCGGGAAAGAAGAAGGAAAACGCAACAAAATTAATGGAGCATCCAACTAAGTTGATTTCGCCTAAACTAAAGCTGCATCTACTATTACTAGCTGCTAATTAACAACGCACTAACTATAATAAACATGCTAAGTGGACTAGCTAGCTAAGCTAAGCTACTACAGTACTCCTCTCCCACTTGACCACCTCAGCTTCCTCCTCCTTTCTCATACTAAGAAAGAATTCAGAGTCAAATTTCTCAGCCACCTCGCCTATATATACATCCCATGCCTAGCTTAATTCCATCATCCATCATCACACAGCTCACTGACCAGCAGCTCAGCCTCATCACTCACGAGCAATCAGCTAGCTAGCTTAGCTTGATCACTACACCTCCATAGATCTTAGCTTAATTAGCTTAGATTATACAAGTGGTCAAGTCAAGAACTGTACCAATGGCATCATCAATGGCGCCTGCAGCAGCAATGGCGATCCTCCTCCTGGCGCTTCTCATGCCCGCCACGCTGTGCTCCCGCTCAGGGCCGCCCTCGTCCAAGCACGGCCACGGCGGCCACGCCAAGCGCGCGCCGCCGCCGGCGTCGCCCGTGGTGCCGGTGGCGCCTCAGGCCGCGGCGCTGGTGCGCGCCACCTGCAACTCCACCGCCTACTACGACGTGTGC ] [+] EMBL AK070037 [ TCATCACACAGCTCACTGACCAGCAGCTCAGCCTCATCACTCACGAGCAATCAGCTAGCTAGCTTAGCTTGATCACTACACCTCCATAGATCTTAGCTTAATTAGCTTAGATTATACAAGTGGTCAAGTCAAGAACTGTACCAATGGCATCATCAATGGCGCCTGCAGCAGCAATGGCGATCCTCCTCCTGGCGCTTCTCATGCCCGCCACGCTGTGCTCCCGCTCAGGGCCGCCCTCGTCCAAGCACGGCCACGGCGGCCACGCCAAGCGCGCGCCGCCGCCGGCGTCGCCCGTGGTGCCGGTGGCGCCTCAGGCCGCGGCGCTGGTGCGCGCCACCTGCAACTCCACCGCCTACTACGACGTGTGCGTGTCGGCGCTCGCCGCCGACCCGTCGAGCACCACGGCCGACGTGCGCGGGCTCTCCGCCATCGCCGTGTCCGTGGCCGCGGCGAACGCGTCCGGCGCGGCGCAGGCGGCGGCGGCGCTGGCCAACGGCACGGCGCCCCTCGCCGCCGCTGCCGCCGGCGACGGCACCGTGCAGGCGCTGCTCCGCGCGTGCGCCGGCAAGTACGGCGACGCGCGCGACGCGCTGGCGGCGGCGAAGGAGTCGATGGGGCAGCA GGACTACGACCTGGCGACGGTGCACGTGAGCGCCGGCGCCGAATACCCGCAGGTGTGCAAGGCGCTGTTCCGGCGGCAGAGGCCCGGGGCGTACCCGGCGGAGCTGGCGGCGAGGGAGGAGGCGCTCAACAAGCTCTGTTCCGTCGCGCTCGACATCATCGCCCTCCTCACCTCCTCTCCTGCATCCAACAACAACAACAGCTAGAGCTAGATACGTATAAATACGGTATAATACTACTAGTACTGCATGCGTACGTGCTAAATACGTGTAATGACATGTATTTGGTAGTAACTAGTTAATCCTGTGTGGTGCTGAGTGAGGATATATATGTTCTTC ] [+] EMBL AU173001 [ AGCTCAGCCTCATCACTCACGAGCAATCAGCTAGCTAGCTTAGCTTGATCACTACACCTCCATAGATCTTAGCTTAATTAGCTTAGATTATACAAGTGGTCAAGTCAAGAACTGTACCAATGGCATCATCAATGGCGCCTGCAGCAGCAATGGCGATCCTCCTCCTGGCGCTTCTCATGCCCGCCACGCTGTGCTCCCGCTCAGGGCCGCCCTCGTCCAAGCACGGCCACGGCGGCCACGCCAAGCGCGCGCCGCCGCCGGCGTCGCCCGTGGTGCCGGTGGCGCCTCAGGCCGCGGCGCTGGTGCGCGCCACCTGCAACTCCACCGCCTACTACGACGTGTGCGTGTCGGCGCTCGCCGCCGACCCGTCGAGCACCACGGCCGACGTGCGCGGGCTCTCCGCCATCGCCGTGTCCGTGGCCGCGG ] [-] EMBL CB682016 [ GTCGGCGCTCGCCGCCGACCCGTCGAGCACCACGGCCGACGTGCGCGGGCTCTCCGCCATCGCCGTGTCCGTGGCCGCGGCGAACGCGTCCGGCGCGGCGCAGGCGGCGGCGGCGCTGGCCAACGGCACGGCGCCCCTCGCCGCCGCTGCCGCCGGCGACGGCACCGTGCAGGCGCTGCTCCGCGCGTGCGCCGGCAAGTACGGCGACGCGCGCGACGCGCTGGCGGCGGCGAAGGAGTCGATGGGGCAGCA GGACTACGACCTGGCGACGGTGCACGTGAGCGCCGGCGCCGAATACCCGCAGGTGTGCAAGGCGCTGTTCCGGCGGCAGAGGCCCGGGGCGTACCCGGCGGAGCTGGCGGCGAGGGAGGAGGCGCTCAACAAGCTCTGCTCCGTCGCGCTCGACATCATCGCCCTCCTCACCTCCTCTCCTGCATCCAACAACAACAACAGCTAGAGCTAGATACGTATAAATACGGTATAATACTACTAGTACTGCATGCGTACGTGCTAAATACGTGTAATGACATGTATTTGGTAGTAACTAGTTAATCCTGTGTGGTGCTGAGTGAGGATATATATGTTCTTCTTGTATTACTAAGTATAGATGAGTTAATTACTGCCGTGCTGAAGCTTAGCATGCTGCATCTTGTACTTCACTTTGGCTCCAGTATAATTAGTCACTATTCATTTTTGTTGAATTAAAATGATCTGAATATGTGCCCCCCCTGGTTTT] [+] EMBL AU184044 [ nATGGGGCAGCAGGGANTACGACCTGGNGACGGTGCACGTGAGCGCCGGCGCCGAATACCCGCAGGTGTGCAAGGCGCTGTTCCGGCGGCAGAGGCCCGGGGCGTACCCGGCGGAGCTGGCGGCGAGGGAGGAGGCGCTCAACAAGCTCTGCTCCGTCGCGCTCGACATCATCGCCCTCCTCACCTCCTCTCCTGCATCCAACAACAACAACAGCTAGAGCTAGATACGTATAAATACGGTATAATACTACTAGTACTGCATGCGTACGTGCTAAATACGTGTAATGACATGTATTTGGTAGTAACTAGTTAATCCTGTGTGGTGCTGAGTGAGGATATATATGTTCTTCTTGTATTACTAAGTATAGATGAGTTAATTACTGCCGTGCTGAAGCTTAGCATGCTGCATCTTGTACTTCAaaaa ] consensusID : consensus_9626#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 431 fasta sequence [GGGCAGCAGGACNACGACCTGGCGACGGTGCACGTGAGCGCCGGCGCCGAATATCCGCAGGTGTGCAAGGCGCTGTTCCGGCGGCAGAGGCCCGGGGCGTACCCGGCGGAGCTGGCGGCGAGGGAGGAGGCGCTCAACAAGCTCTGCTCCGTCGCGCTCGACATCATCGCCCTCCTCACCTCCTCTCCTGCATCCAACAACAACAACAGCTAGAGCTAGATACNGTATAAATACGGTATAATACTACTAGTACTGCATGCGTACGTGCTAAATACGTGTAATGACATGTATTTGGTAGTAACTAGTTAATCCTGTGTGGTGCTGAGTGAGGATATATATGTTCTTCTTGTATTACTAAGTATAGATGAGTTAATTACTGCCGTGCTGAAGCTTAGCATGCTGCATCTTGTACTTAAAAAAAAAAAAAAAAA] [+] EMBL AU173002 [GGGCAGCAGGACNACGACCTGGCGACGGTGCACGTGAGCGCCGGCGCCGAATATCCGCAGGTGTGCAAGGCGCTGTTCCGGCGGCAGAGGCCCGGGGCGTACCCGGCGGAGCTGGCGGCGAGGGAGGAGGCGCTCAACAAGCTCTGCTCCGTCGCGCTCGACATCATCGCCCTCCTCACCTCCTCTCCTGCATCCAACAACAACAACAGCTAGAGCTAGATACNGTATAAATACGGTATAATACTACTAGTACTGCATGCGTACGTGCTAAATACGTGTAATGACATGTATTTGGTAGTAACTAGTTAATCCTGTGTGGTGCTGAGTGAGGATATATATGTTCTTCTTGTATTACTAAGTATAGATGAGTTAATTACTGCCGTGCTGAAGCTTAGCATGCTGCATCTTGTACTTAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9626#0 AATTATTAATTTACTTTTGACCATTACTAATTAGCCATTACAATCCAGCAAAACTAAGTC 60 consensus_9626#1 ------------------------------------------------------------ consensus_9626#0 GGCAGGCAGCAGATAAATTAAACCACGCGCGCGCGGTATACACTTGTGAACACGTACGTA 120 consensus_9626#1 ------------------------------------------------------------ consensus_9626#0 GGCGGGAAAGAAGAAGGAAAACGCAACAAAATTAATGGAGCATCCAACTAAGTTGATTTC 180 consensus_9626#1 ------------------------------------------------------------ consensus_9626#0 GCCTAAACTAAAGCTGCATCTACTATTACTAGCTGCTAATTAACAACGCACTAACTATAA 240 consensus_9626#1 ------------------------------------------------------------ consensus_9626#0 TAAACATGCTAAGTGGACTAGCTAGCTAAGCTAAGCTACTACAGTACTCCTCTCCCACTT 300 consensus_9626#1 ------------------------------------------------------------ consensus_9626#0 GACCACCTCAGCTTCCTCCTCCTTTCTCATACTAAGAAAGAATTCAGAGTCAAATTTCTC 360 consensus_9626#1 ------------------------------------------------------------ consensus_9626#0 AGCCACCTCGCCTATATATACATCCCATGCCTAGCTTAATTCCATCATCCATCATCACAC 420 consensus_9626#1 ------------------------------------------------------------ consensus_9626#0 AGCTCACTGACCAGCAGCTCAGCCTCATCACTCACGAGCAATCAGCTAGCTAGCTTAGCT 480 consensus_9626#1 ------------------------------------------------------------ consensus_9626#0 TGATCACTACACCTCCATAGATCTTAGCTTAATTAGCTTAGATTATACAAGTGGTCAAGT 540 consensus_9626#1 ------------------------------------------------------------ consensus_9626#0 CAAGAACTGTACCAATGGCATCATCAATGGCGCCTGCAGCAGCAATGGCGATCCTCCTCC 600 consensus_9626#1 ------------------------------------------------------------ consensus_9626#0 TGGCGCTTCTCATGCCCGCCACGCTGTGCTCCCGCTCAGGGCCGCCCTCGTCCAAGCACG 660 consensus_9626#1 ------------------------------------------------------------ consensus_9626#0 GCCACGGCGGCCACGCCAAGCGCGCGCCGCCGCCGGCGTCGCCCGTGGTGCCGGTGGCGC 720 consensus_9626#1 ------------------------------------------------------------ consensus_9626#0 CTCAGGCCGCGGCGCTGGTGCGCGCCACCTGCAACTCCACCGCCTACTACGACGTGTGCG 780 consensus_9626#1 ------------------------------------------------------------ consensus_9626#0 TGTCGGCGCTCGCCGCCGACCCGTCGAGCACCACGGCCGACGTGCGCGGGCTCTCCGCCA 840 consensus_9626#1 ------------------------------------------------------------ consensus_9626#0 TCGCCGTGTCCGTGGCCGCGGCGAACGCGTCCGGCGCGGCGCAGGCGGCGGCGGCGCTGG 900 consensus_9626#1 ------------------------------------------------------------ consensus_9626#0 CCAACGGCACGGCGCCCCTCGCCGCCGCTGCCGCCGGCGACGGCACCGTGCAGGCGCTGC 960 consensus_9626#1 ------------------------------------------------------------ consensus_9626#0 TCCGCGCGTGCGCCGGCAAGTACGGCGACGCGCGCGACGCGCTGGCGGCGGCGAAGGAGT 1020 consensus_9626#1 ------------------------------------------------------------ consensus_9626#0 CGATGGGGCAGCAGGACTACGACCTGGCGACGGTGCACGTGAGCGCCGGCGCCGAATACC 1080 consensus_9626#1 -----GGGCAGCAGGACNACGACCTGGCGACGGTGCACGTGAGCGCCGGCGCCGAATATC 55 ************ **************************************** * consensus_9626#0 CGCAGGTGTGCAAGGCGCTGTTCCGGCGGCAGAGGCCCGGGGCGTACCCGGCGGAGCTGG 1140 consensus_9626#1 CGCAGGTGTGCAAGGCGCTGTTCCGGCGGCAGAGGCCCGGGGCGTACCCGGCGGAGCTGG 115 ************************************************************ consensus_9626#0 CGGCGAGGGAGGAGGCGCTCAACAAGCTCTGCTCCGTCGCGCTCGACATCATCGCCCTCC 1200 consensus_9626#1 CGGCGAGGGAGGAGGCGCTCAACAAGCTCTGCTCCGTCGCGCTCGACATCATCGCCCTCC 175 ************************************************************ consensus_9626#0 TCACCTCCTCTCCTGCATCCAACAACAACAACAGCTAGAGCTAGATACG-TATAAATACG 1259 consensus_9626#1 TCACCTCCTCTCCTGCATCCAACAACAACAACAGCTAGAGCTAGATACNGTATAAATACG 235 ************************************************ ********** consensus_9626#0 GTATAATACTACTAGTACTGCATGCGTACGTGCTAAATACGTGTAATGACATGTATTTGG 1319 consensus_9626#1 GTATAATACTACTAGTACTGCATGCGTACGTGCTAAATACGTGTAATGACATGTATTTGG 295 ************************************************************ consensus_9626#0 TAGTAACTAGTTAATCCTGTGTGGTGCTGAGTGAGGATATATATGTTCTTCTTGTATTAC 1379 consensus_9626#1 TAGTAACTAGTTAATCCTGTGTGGTGCTGAGTGAGGATATATATGTTCTTCTTGTATTAC 355 ************************************************************ consensus_9626#0 TAAGTATAGATGAGTTAATTACTGCCGTGCTGAAGCTTAGCATGCTGCATCTTGTACTTC 1439 consensus_9626#1 TAAGTATAGATGAGTTAATTACTGCCGTGCTGAAGCTTAGCATGCTGCATCTTGTACTTA 415 *********************************************************** consensus_9626#0 ACTTTGGCTCCAGTATAATTAGTCACTATTCATTTTTGTTGAATTAAAATGATCTGAATA 1499 consensus_9626#1 AAAAAAAAAAAAAAAA-------------------------------------------- 431 * * * consensus_9626#0 TGTGCCCCCCCTGGTTTT 1517 consensus_9626#1 ------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||