These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9629#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1035 fasta sequence [AACTTAACTAAAATTAGCGCCAAGCAAAAGAAAGTCAAGGAGTTCAGCAAAGATGAGGAGCCACACAGCCGTAGTCTGCTCGGCACTGCTCGTGCTTGCCGCTGCATTGCTGCTCCCAGCGCACCATGCGATGGCCGAGGACGTCGTCTCGAGCAGAGACAACACGGCCAGGGCGCCGTCATCTTCGCCGTCCGCTGCTACGGCCACGGCGCCGGCACCGTCGCCCTACACCGACACGGCCATGGCGCCGGCCCCGTCGTCCTCCAACGACACGGCCGTAGAGCCGGTGGCCCCGCCGCCGCTGCCGTTCATCATCGTGGAGGGCGTGGTCTACTGCAAAACGTGCAAGTCGAGGGGCTACAGCAGCGACATGGACGCGTCACCTCTCCCAGGCGCGACGGCGCAGCTGGTGTGCTACGGGAAGAAGGTGGTGAACGTGACGGGGACGGTGACGGACGCGAACGGCTACTTCCTGGTGATGTTCTACGACCTGCGCAACTTCAACCCGCGCACCTGCAAGGTGTTCCTGGGCTCGTCGCCGACGTCGCTGTGCGACAAGCCCGTCTACCCGCCAAACAAGTGGATCGGCCTCTCGCTCCTCAAGGAGACCAGGACCGTCCCGCCCGTCGGCCTGCAGGCCATCTACTGCCCCACCAGCGTCCTCTTCTACGGCCCCGCCAACGCCGGCCAGTGCCCCTCCGGCTAACCAGCTGGCTCTAGCTACTCCGGCAGCTCATGGCCGGCCGTTACGCCGGCGACCGGGCATGCGGCACGCGCGCCGAGGTGCGTGACTGCGCGGGATCGATCGATCGATCAAGGAAGGAATAATTAAAGTAGGCAACTAGACATACGTATTGTTAACGTGTGTCATGGTGTTCCACTTGCAGTAGCGACTAGGTAGCGAGACTGTGTGTGTACGTTCAGTTCTAGTTTGAGAGGTAGCGCGGCTGTGATGTTTCGATCGCTTGTTGTCAGTGTAGCATTGGTGGTTTCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK064172 [AACTTAACTAAAATTAGCGCCAAGCAAAAGAAAGTCAAGGAGTTCAGCAAAGATGAGGAGCCACACAGCCGTAGTCTGCTCGGCACTGCTCGTGCTTGCCGCTGCATTGCTGCTCCCAGCGCACCATGCGATGGCCGAGGACGTCGTCTCGAGCAGAGACAACACGGCCAGGGCGCCGTCATCTTCGCCGTCCGCTGCTACGGCCACGGCGCCGGCACCGTCGCCCTACACCGACACGGCCATGGCGCCGGCCCCGTCGTCCTCCAACGACACGGCCGTAGAGCCGGTGGCCCCGCCGCCGCTGCCGTTCATCATCGTGGAGGGCGTGGTCTACTGCAAAACGTGCAAGTCGAGGGGCTACAGCAGCGACATGGACGCGTCACCTCTCCCAGGCGCGACGGCGCAGCTGGTGTGCTACGGGAAGAAGGTGGTGAACGTGACGGGGACGGTGACGGACGCGAACGGCTACTTCCTGGTGATGTTCTACGACCTGCGCAACTTCAACCCGCGCACCTGCAAGGTGTTCCTGGGCTCGTCGCCGACGTCGCTGTGCGACAAGCCCGTCTACCCGCCAAACAAGTGGATCGGCCTCTCGCTCCTCAAGGAGACCAGGACCGTCCCGCCCGTCGGCCTGCAGGCCATCTACTGCCCCACCAGCGTCCTCTTCTACGGCCCCGCCAACGCCGGCCAGTGCCCCTCCGGCTAACCAGCTGGCTCTAGCTACTCCGGCAGCTCATGGCCGGCCGTTACGCCGGCGACCGGGCATGCGGCACGCGCGCCGAGGTGCGTGACTGCGCGGGATCGATCGATCGATCAAGGAAGGAATAATTAAAGTAGGCAACTAGACATACGTATTGTTAACGTGTGTCATGGTGTTCCACTTGCAGTAGCGACTAGGTAGCGAGACTGTGTGTGTACGTTCAGTTCTAGTTTGAGAGGTAGCGCGGCTGTGATGTTTCGATCGCTTGTTGTCAGTGTAGCATTGG ] [+] EMBL CA756734 [ CAGCTCATGGCCGGCCGTTACGCCGGCGACCGGGCATGCGGCACGCGCGCCGAGGTGCGTGACTGCGCGGGATCGATCGATCGATCAAGGAAGGAATAATTAAAGTAGGCAACTAGACATACGTATTGTCAACGTGTGTCATGGTGTTCCACTTGCAGTAGCGACTAGGTAGCGAGACTGTGTGTGTACGTTCAGTTCTAGTTTGAGAGGTAGCGCGGCTGTGATGTTTCGATCGCTTGTTGTCAGTGTAGCATTGGTGGTTTCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_9629#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 432 fasta sequence [TGCCCCACCAGCGTCCTCTTNTACGGCCCCGCCAACGCCGGCCAGTGCCCCTCCGGCTAACCAGCTGGCTCTAGCTACTCCGGCAGCTCATGGCCGGCCGTTACGCCGGCGACCGGGCATGCGGCACGCGCGCCGAGGTGCGTGACTGCGCGGGATCGATCGATCGATCAAGGAAGGAATAATTAAAGTAGGCAACTAGACATACGTATTGTCAACGTGTGTCATGGTGTTCCACTTGCAGTAGCGACTAGGTAGCGAGACTGTGTGTGTACGTTCAGTTCTAGTTTGAGAGGTAGCGCGGCTGTGATGTTTCGATCGCTTGTTGTC-AGTGTAGCATTGGTGGTTTCTCCATTGGTTCTCTGTTCAAACTTGTATGATTTGTCCGCTTGCAAA-TTTTGCAAATTTTTT-AAGACGTTGAAATCTAAAAAAAAA] [+] EMBL AU173266 [TGCCCCACCAGCGTCCTCTTNTACGGCCCCGCCAACGCCGGCCAGTGCCCCTCCGGCTAACCAGCTGGCTCTAGCTACTCCGGCAGCTCATGGCCGGCCGTTACGCCGGCGACCGGGCATGCGGCACGCGCGCCGAGGTGCGTGACTGCGCGGGATCGATCGATCGATCAAGGAAGGAATAATTAAAGTAGGCAACTAGACATACGTATTGTCAACGTGTGTCATGGTGTTCCACTTGCAGTAGCGACTAGGTAGCGAGACTGTGTGTGTACGTTCAGTTCTAGTTTGAGAGGTAGCGCGGCTGTGATGTTTCGATCGCTTGTTGTC AGTGTAGCATTGGTGGTTTCTCCATTGGTTCTCTGTTCAAACTTGTATGATTTGTCCGCTTGCAAA TTTTGCAAATTTTTT AAGACGTTGAAATCTAAAAAAAAA] [+] EMBL OSR19551A [TGCCCCACCAGCGTCCTCTTCTACGGCCCCGCCAACGCCGGCCAGTGCCCCTCCGGCTAACCAGCTGGCTCTAGCTACTCCGGCAGCTCATGGCCGGCCGTTACGCCGGCGACCGGGCATGCGGCACG GCGCCGAGGTGCGTGACTNCGCGGGATCGATCGATCGATCAAGGAAGGAATAATTAAAGTAGGCAACTAGACATACGTATTGTCAACGTGTGTCATGGTGTTCCACTTGCAGTAGCGACTAGGTAGCGAGACTGTGTGTGTACGTTCAGTTCTAGTTTGAGAGGTAGCGCGGCTGTNATGTTTCGATCGCTTGTTGTC AGTTTAGCATTGGTGGTTTCTCCATTGGTTCTCTGTTCAAACTTGTATGATTTGTCCGTTTGCAAATTTTTGNAAATTTTTTAAAGACGg ] [+] EMBL OSR14501A [TGCCCCACCAGCGTCCTCTTCTACGGCCCCGCCAACGCCGGCCAGTGCCCCTCCGGCTAACCAGCTGGCTCTAGCTACTCCGGCAGCTCATGGCCGGCCGTTACGCCGGCGACCGGGCATGCGGCACG GCGCCGAGGTGNGTGACTGCGCGGGATCGATCGATCGATCAAGGAAGGAATAATTAAAGTAGGCAACTAGACATACGTATTGTCAACGTGTGTCATGGTGTTCCACTTGCAGTAGCGACTAGGTAGCGAGACTGTGTGTGTACGTTCAGTTCTAGTTTGAGAGGTAGCGCGGCTGTGATGTTTCGATCGCTTGTTGTC AGTNTAGCATTGGTGGTTTCTCCATTGGTTCTCTGTTCAAACTTGTATGATTTGTCCGCTTGCAA ] [+] EMBL AU184162 [ CCAGCGTCCTCTTNTACGGCCCCGCCAACGCCGGCCAGTGCCCCTCCGGCTAACCAGCTGGCTCTAGCTACTCCGGCAGCTCATGGCCGGCCGTTACGCCGGCGACCGGGCATGCGGCACGCGCGCCGAGGTGCGTGACTGCGCGGGATCGATCGATCGATCAAGGAAGGAATAATTAAAGTAGGCAACTAGACATACGTATTGTCAACGTGTGTCATGGTGTTCCACTTGCAGTAGCGACTAGGTAGCGAGACTGTGTGTGTACGTTCAGTTCTAGTTTGAGAGGTAGCGCGGCTGTGATGTTTCGATCGCTTGTTGTCAAGTGTAGCATTGGTGGTTTCTCCATTGGTTCTCTGTTCAAACTTGTATGATTTGTCCGCTTGCAAA TTTTGCAAATTTTTT AAGACGTTGAAATCTAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9629#0 AACTTAACTAAAATTAGCGCCAAGCAAAAGAAAGTCAAGGAGTTCAGCAAAGATGAGGAG 60 consensus_9629#1 ------------------------------------------------------------ consensus_9629#0 CCACACAGCCGTAGTCTGCTCGGCACTGCTCGTGCTTGCCGCTGCATTGCTGCTCCCAGC 120 consensus_9629#1 ------------------------------------------------------------ consensus_9629#0 GCACCATGCGATGGCCGAGGACGTCGTCTCGAGCAGAGACAACACGGCCAGGGCGCCGTC 180 consensus_9629#1 ------------------------------------------------------------ consensus_9629#0 ATCTTCGCCGTCCGCTGCTACGGCCACGGCGCCGGCACCGTCGCCCTACACCGACACGGC 240 consensus_9629#1 ------------------------------------------------------------ consensus_9629#0 CATGGCGCCGGCCCCGTCGTCCTCCAACGACACGGCCGTAGAGCCGGTGGCCCCGCCGCC 300 consensus_9629#1 ------------------------------------------------------------ consensus_9629#0 GCTGCCGTTCATCATCGTGGAGGGCGTGGTCTACTGCAAAACGTGCAAGTCGAGGGGCTA 360 consensus_9629#1 ------------------------------------------------------------ consensus_9629#0 CAGCAGCGACATGGACGCGTCACCTCTCCCAGGCGCGACGGCGCAGCTGGTGTGCTACGG 420 consensus_9629#1 ------------------------------------------------------------ consensus_9629#0 GAAGAAGGTGGTGAACGTGACGGGGACGGTGACGGACGCGAACGGCTACTTCCTGGTGAT 480 consensus_9629#1 ------------------------------------------------------------ consensus_9629#0 GTTCTACGACCTGCGCAACTTCAACCCGCGCACCTGCAAGGTGTTCCTGGGCTCGTCGCC 540 consensus_9629#1 ------------------------------------------------------------ consensus_9629#0 GACGTCGCTGTGCGACAAGCCCGTCTACCCGCCAAACAAGTGGATCGGCCTCTCGCTCCT 600 consensus_9629#1 ------------------------------------------------------------ consensus_9629#0 CAAGGAGACCAGGACCGTCCCGCCCGTCGGCCTGCAGGCCATCTACTGCCCCACCAGCGT 660 consensus_9629#1 ----------------------------------------------TGCCCCACCAGCGT 14 ************** consensus_9629#0 CCTCTTCTACGGCCCCGCCAACGCCGGCCAGTGCCCCTCCGGCTAACCAGCTGGCTCTAG 720 consensus_9629#1 CCTCTTNTACGGCCCCGCCAACGCCGGCCAGTGCCCCTCCGGCTAACCAGCTGGCTCTAG 74 ****** ***************************************************** consensus_9629#0 CTACTCCGGCAGCTCATGGCCGGCCGTTACGCCGGCGACCGGGCATGCGGCACGCGCGCC 780 consensus_9629#1 CTACTCCGGCAGCTCATGGCCGGCCGTTACGCCGGCGACCGGGCATGCGGCACGCGCGCC 134 ************************************************************ consensus_9629#0 GAGGTGCGTGACTGCGCGGGATCGATCGATCGATCAAGGAAGGAATAATTAAAGTAGGCA 840 consensus_9629#1 GAGGTGCGTGACTGCGCGGGATCGATCGATCGATCAAGGAAGGAATAATTAAAGTAGGCA 194 ************************************************************ consensus_9629#0 ACTAGACATACGTATTGTTAACGTGTGTCATGGTGTTCCACTTGCAGTAGCGACTAGGTA 900 consensus_9629#1 ACTAGACATACGTATTGTCAACGTGTGTCATGGTGTTCCACTTGCAGTAGCGACTAGGTA 254 ****************** ***************************************** consensus_9629#0 GCGAGACTGTGTGTGTACGTTCAGTTCTAGTTTGAGAGGTAGCGCGGCTGTGATGTTTCG 960 consensus_9629#1 GCGAGACTGTGTGTGTACGTTCAGTTCTAGTTTGAGAGGTAGCGCGGCTGTGATGTTTCG 314 ************************************************************ consensus_9629#0 ATCGCTTGTTGTCAGTGTAGCATTGGTGGTTTCTCCAAAAAAA----AAAAAAAAAAAAA 1016 consensus_9629#1 ATCGCTTGTTGTCAGTGTAGCATTGGTGGTTTCTCCATTGGTTCTCTGTTCAAACTTGTA 374 ************************************* *** * consensus_9629#0 AAAAAAAAAAAAAAAAAAA--------------------------------------- 1035 consensus_9629#1 TGATTTGTCCGCTTGCAAATTTTGCAAATTTTTTAAGACGTTGAAATCTAAAAAAAAA 432 * *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||