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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9636#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 790 fasta sequence
[TCTTTTTTTTTTTTTTTACAGATCATTTCGTTAGAAACAAGTGCAAAACATGGATTGACAAGGCAAAATGATTACACGAACGTCCTTTTCGGTCCAGGTGGCTAAAGATAAGGGAAACTTGGATTTTATCCCCGAAAGACCACCGAACACACACTGATCATGGCAACGTTAATTATTGTTTCTTTTATGACTGTAATCTAGCACATAACAATAATTTTTCTGTGGAACAATAATTTTCCTGCAACAGAGATGATTTTGCGCCTCATACACTTCGCCAGCTTCAAGTGGAGCTTGTATTGATGTTTGAAGGTTGAAACAATGAAAAAACCACACATATTTTTTCACTTTAATCCTGAACTTTTTTGTTACAAGAACCACTAGCAAGAAAGTATTAAAAAGAAGCTCAGGCAGCAACTTGACACTATTGATTGGCTGGCCATCACAGCATTTGAAGTGAGCAAGTGTATGTGTGCTCAAACCCTGTGGTATCACTGCAAGAACAAAATTATGCTGATACCTCATTAATATGTTGGTTGAGGCTTTTCCCAGGGGGTATAAAGATCAAGTCATCCCAACCAGAATTCCTCTCATTCATCTCCATTTTCTTCAAGACATCCTCCAAACTCCCAACCATGATTTGCTTAGATAAGGCAGATCCTCTAGAAGTTTTAGAAGCCTTTGTAAGTTCTCTTTCTATGTCCTCCTGAGCTAAGAAGGCGAAAATGGTGAAGACCTAAATCAGACCGGGTAAACTACATGAAAGAAATTGAAGCCTGGCAAACCTTTTGAA]
[+] EMBL CB671671 [TCTTTTTTTTTTTTTTTACAGATCATTTCGTTAGAAACAAGTGCAAAACATGGATTGACAAGGCAAAATGATTACACGAACGTCCTTTTCGGTCCAGGTGGCTAAAGATAAGGGAAACTTGGATTTTATCCCCGAAAGACCACCGAACACACACTGATCATGGCAACGTTAATTATTGTTTCTTTTATGACTGTAATCTAGCACATAACAATAATTTTTCTGTGGAACAATAATTTTCCTGCAACAGAGATGATTTTGCGCCTCATACACTTCGCCAGCTTCAAGTGGAGCTTGTATTGATGTTTGAAGGTTGAAACAATGAAAAAACCACACATATTTTTTCACTTTAATCCTGAACTTTTTTGTTACAAGAACCACTAGCAAGAAAGTATTAAAAAGAAGCTCAGGCAGCAACTTGACACTATTGATTGGCTGGCCATCACAGCATTTGAAGTGAGCAAGTGTATGTGTGCTCAAACCCTGTGGTATCACTGCAAGAACAAAATTATGCTGATACCTCATTAATATGTTGGTTGAGGCTTTTCCCAGGGGGTATAAAGATCAAGTCATCCCAACCAGAATTCCTCTCATTCATCTCCATTTTCTTCAAGACATCCTCCAAACTCCCAACCATGATTTGCTTAGATAAGGCAGATCCTCTAGAAGTTTTAGAAGCCTTTGTAAGTTCTCTTTCTATGTCCTCCTGAGCTAAGAAGGCGAAAATGGTGAAGACCTAAATCAGACCGGGTAAACTACATGAAAGAAATTGAAGCCTGGCAAACCTTTTGAA]
[-] EMBL AK058792 [ CACTTCGCCAGCTTCAAGTGGAGCTTGTATTGATGTTTGAAGGTTGAAACAATGAAAAAACCACACATATTTTTTCACTTTAATCCTGAACTTTTTTGTTACAAGAACCACTAGCAAGAAAGTATTAAAAAGAAGCTCAGGCAGCAACTTGACACTATTGATTGGCTGGCCATCACAGCATTTGAAGTGAGCAAGTGTATGTGTGCTCAAACCCTGTGGTATCACTGCAAGAACAAAATTATGCTGATACCTCATTAATATGTTGGTTGAGGCTTTTCCCAGGGGGTATAAAGATCAAGTCATCCCAACCAGAATTCCTCTCATTCATCTCCATTTTCTTCAAGACATCCTCCAAACTCCCAACCATGATTTGCTTAGATAAGGCAGATCCTCTAGAAGTTTTAGAAG ]
[-] EMBL AU173915 [ tttTTCGCCAGCTTCAAGTGGAGCTTGTATTGATGTTTGAAGGTTGAAACAATGAAAAAACCACACATATTTTTTCACTTTAATCCTGAACTTTTTTGTTACAAGAACCACTAGCAAGAAAGTATTAAAAAGAAGCTCAGGCAGCAACTTGACACTATTGATTGGCTGGCCATCACAGCATTTGAAGTGAGCAAGTGTATGTGTGCTCAAACCCTGNGGTATCACTGCAAGAACAAAATTATGCTGATACCTCATTAATATGTTGGTTGAGGCTTTTCCCAGGGGGTATAAAGATCAAGTCATCCCAACCAGAATTCCTCTCATTCATCTCCATTTTCTT AAGACATCCTCCAAACTCCCAACCATGATTTGCTTAAATAAGGCAGATCCTNTAAAA ]
consensusID : consensus_9636#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence
[ATGGCAACGATAATTATTGTTTCTTTTATGACTGGAATCTAACACATAACAATAATTTTTCTGTGGAACAATAATTTTCCTGCAACAAAGATGATTTTGCGCCTCATACACTTCGCCAGCTTCAAGTGGAGCTTGTATTGATGTTTGAAGGGTGAAACAATGAAAAAACCACACATATTTTTTCACTTTAATCCTGAACTTTTTTGTTACAAGAACCACTAACAAGAAAGTATTAAAAAGAAGCTCAGGCAGCAACTTGACACTATTGATTGGCTGGCCATCACCGCATTTGAAGTGAGCAAGTGTATGTGTGCTCAAACCCTGGGGTATCACTGCAAGAACAAAATTATGCTGATACCTCATTAATATGGTGGTTGAGGCTTTTCCCAGGGGGAATAAAGATCCAGTCATCCCAACCAAAATTCCTCTCATTCATCTCCATTTTCTTCAAGACATCCTCCAAACTCCCAACCATGATTTGCTTAGATAAGGCAAATCCTCTAGAAGATTTACAAGCCTTTGTAAGTTCTCTTTCAAAGGCCTCCTTTTGAAAATATATCGGACAGTAACGCTTCTTCTGGTTCATAACAACCCAATATGTCTAACTGGAAAACAGGAACACCATCAAAAGCATTTAAGCCAT]
[+] EMBL CB662350 [ATGGCAACGATAATTATTGTTTCTTTTATGACTGGAATCTAACACATAACAATAATTTTTCTGTGGAACAATAATTTTCCTGCAACAAAGATGATTTTGCGCCTCATACACTTCGCCAGCTTCAAGTGGAGCTTGTATTGATGTTTGAAGGGTGAAACAATGAAAAAACCACACATATTTTTTCACTTTAATCCTGAACTTTTTTGTTACAAGAACCACTAACAAGAAAGTATTAAAAAGAAGCTCAGGCAGCAACTTGACACTATTGATTGGCTGGCCATCACCGCATTTGAAGTGAGCAAGTGTATGTGTGCTCAAACCCTGGGGTATCACTGCAAGAACAAAATTATGCTGATACCTCATTAATATGGTGGTTGAGGCTTTTCCCAGGGGGAATAAAGATCCAGTCATCCCAACCAAAATTCCTCTCATTCATCTCCATTTTCTTCAAGACATCCTCCAAACTCCCAACCATGATTTGCTTAGATAAGGCAAATCCTCTAGAAGATTTACAAGCCTTTGTAAGTTCTCTTTCAAAGGCCTCCTTTTGAAAATATATCGGACAGTAACGCTTCTTCTGGTTCATAACAACCCAATATGTCTAACTGGAAAACAGGAACACCATCAAAAGCATTTAAGCCAT]
consensusID : consensus_9636#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 508 fasta sequence
[TTTTTTTTTTGGATCATGGCAACGTTAATTATGGTTTCTTTTATGACTGTAATCTAGCACATAACAATAATTTTTCTGGGGAACAATAATTTTCCTGCAACAGAGATGATTTGGCGCCTCATACACTTCGCCAGCTTCAAGGGGAGCTGTGTATTGGATGTTGGAAGGTTGAAACAATGAAAAAACCACACACATATTTTTTCACTTTAATCCTGAACTTTTTGGTTACAAGAACCACTAGCAAGAAAGTATTAAAAAGAAGCTCAGGCAGCAACTTGACACTATGGATGGGCTGGCCATCACAGCATTTGAAGTGAGCAAGTGTATGTGTGCTCAAACCCGGGGGTATCACTGCAAGAACAAAATTATGCTGATACCTCATTAATATGTGGGTTGAGGCTTTTCCCAGGGGTATAAAGATCAAGTCATCCCAACAGAATTCCTCTCATTCATCTCCATTTTCTTCAAGAATTCTCCAAATCCCAACATGATTGTGTTCGATAGGGAG]
[-] EMBL BI812981 [TTTTTTTTTTGGATCATGGCAACGTTAATTATGGTTTCTTTTATGACTGTAATCTAGCACATAACAATAATTTTTCTGGGGAACAATAATTTTCCTGCAACAGAGATGATTTGGCGCCTCATACACTTCGCCAGCTTCAAGGGGAGCTGTGTATTGGATGTTGGAAGGTTGAAACAATGAAAAAACCACACACATATTTTTTCACTTTAATCCTGAACTTTTTGGTTACAAGAACCACTAGCAAGAAAGTATTAAAAAGAAGCTCAGGCAGCAACTTGACACTATGGATGGGCTGGCCATCACAGCATTTGAAGTGAGCAAGTGTATGTGTGCTCAAACCCGGGGGTATCACTGCAAGAACAAAATTATGCTGATACCTCATTAATATGTGGGTTGAGGCTTTTCCCAGGGGTATAAAGATCAAGTCATCCCAACAGAATTCCTCTCATTCATCTCCATTTTCTTCAAGAATTCTCCAAATCCCAACATGATTGTGTTCGATAGGGAG]
consensusID : consensus_9636#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 407 fasta sequence
[CGTGCTCGTCTCCGACCCCGCCACCGGCCTCCGCTCCCTCGGCCTCCTCTGCTTCCGCTCCGAGGACGCCGACGCTCTCCTCACCCACGTGAGGATGCGGCANCGGTGGTAGGGAGAGGGGCAAAAGTGGTGCCGATTACGCTTGATCAGGTTTACATGTTGAAGGCTGAAGGTATTGCATTTCGGTTCTTACCTGACCCTCTTCAAATTAAGAATGCGTTGGAGTTAAAATCTGGCTTAACTGCTTTTGATGGTGTTCCTGTTTTCCAGTCAGACCTATTGGTTGTTAAGAAACAGAAGAAGCGTTACTGTCCGATATATTTTCAAAAGCTCAGGAGGACATAGAAAGAGAACTTACAAAGGCTTCTAAAACTTCTAGAGGATCTGCCTTATCTAAGCAAATCATG]
[+] EMBL OSC23241 [CGTGCTCGTCTCCGACCCCGCCACCGGCCTCCGCTCCCTCGGCCTCCTCTGCTTCCGCTCCGAGGACGCCGACGCTCTCCTCACCCACGTGAGGATGCGGCANCGGTGGTAGGGAGAGGGGCAAAAGTGGTGCCGATTACGCTTGATCAGGTTTACATGTTGAAGGCTGAAGGTATTGCATTTCGGTTCTTACCTGACCCTCTTCAAATTAAGAATGCGTTGGAGTTAAAATCTGGCTTAACTGCTTTTGATGGTGTTCCTGTTTTCCAGTCAGACCTATTGGTTGTTAAGAAACAGAAGAAGCGTTACTGTCCGATATATTTTCAAAAGCTCAGGAGGACATAGAAAGAGAACTTACAAAGGCTTCTAAAACTTCTAGAGGATCTGCCTTATCTAAGCAAATCATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9636#0 TCTTTTTTTTTTTTTTTACAGATCATTTCGTTAGAAACAAGTGCAAAACATGGATTGACA 60
consensus_9636#2 ------------------------------------------------------------
consensus_9636#1 ------------------------------------------------------------
consensus_9636#3 ------------------------------------------------------------
consensus_9636#0 AGGCAAAATGATTACACGAACGTCCTTTTCGGTCCAGGTGGCTAAAGATAAGGGAAACTT 120
consensus_9636#2 ------------------------------------------------------------
consensus_9636#1 ------------------------------------------------------------
consensus_9636#3 ------------------------------------------------------------
consensus_9636#0 GGATTTTATCCCCGAAAGACCACCGAACACACACTGATCATGGCAACGTTAATTATTGTT 180
consensus_9636#2 ------------------------TTTTTTTTTTGGATCATGGCAACGTTAATTATGGTT 36
consensus_9636#1 ---------------------------------------ATGGCAACGATAATTATTGTT 21
consensus_9636#3 ------------------------------------------------------------
consensus_9636#0 TCTTTTATGACTGTAATCTAGCACATAACAATAATTTTTCTGTGGAACAATAATTTTCCT 240
consensus_9636#2 TCTTTTATGACTGTAATCTAGCACATAACAATAATTTTTCTGGGGAACAATAATTTTCCT 96
consensus_9636#1 TCTTTTATGACTGGAATCTAACACATAACAATAATTTTTCTGTGGAACAATAATTTTCCT 81
consensus_9636#3 -CGTGCTCGTCTCCGACCCCGC---CACCGGCCTCCGCTCCCTCGGCCTCCTCTGCTTCC 56
* * * ** * * * * * ** * * * * *
consensus_9636#0 GCAACAGAGATGATTTTGCGCCTCATACACTTCGCCAGCTTCAAGTGGAGCT-TGTATTG 299
consensus_9636#2 GCAACAGAGATGATTTGGCGCCTCATACACTTCGCCAGCTTCAAGGGGAGCTGTGTATTG 156
consensus_9636#1 GCAACAAAGATGATTTTGCGCCTCATACACTTCGCCAGCTTCAAGTGGAGCT-TGTATTG 140
consensus_9636#3 GCTCCGAGGACG--CCGACGCTCT-----CCTCACCCACGTGAGGATGCGGCANCGGTGG 109
** * ** * *** * ** ** * * * * * * * *
consensus_9636#0 -ATGTTTGAAGGTTGAAACAATGAAAAAACCACACA--TATTTTTTCACTTT-AATCCTG 355
consensus_9636#2 GATGTTGGAAGGTTGAAACAATGAAAAAACCACACACATATTTTTTCACTTT-AATCCTG 215
consensus_9636#1 -ATGTTTGAAGGGTGAAACAATGAAAAAACCACACA--TATTTTTTCACTTT-AATCCTG 196
consensus_9636#3 TAGGGAGAGGGGCAAAAGTGGTGCCGATTACGCTTGATCAGGTTTACATGTTGAAGGCTG 169
* * ** ** ** * * * * *** ** ** ** ***
consensus_9636#0 AACTTTTTT-GTTACAAGAACCACT--AGCAAGAAAGTATTAAAAAGAAGCTCAGGCAGC 412
consensus_9636#2 AACTTTTTG-GTTACAAGAACCACT--AGCAAGAAAGTATTAAAAAGAAGCTCAGGCAGC 272
consensus_9636#1 AACTTTTTT-GTTACAAGAACCACT--AACAAGAAAGTATTAAAAAGAAGCTCAGGCAGC 253
consensus_9636#3 AAGGTATTGCATTTCGGTTCTTACCTGACCCTCTTCAAATTAAGAATGCGTTGGAGTTAA 229
** * ** ** * ** * * ***** ** * * *
consensus_9636#0 AACTTGACACTATTGATTGGCTGGCCATCACAGCATTTGAAGTGAGCAAGTGTATGTGTG 472
consensus_9636#2 AACTTGACACTATGGATGGGCTGGCCATCACAGCATTTGAAGTGAGCAAGTGTATGTGTG 332
consensus_9636#1 AACTTGACACTATTGATTGGCTGGCCATCACCGCATTTGAAGTGAGCAAGTGTATGTGTG 313
consensus_9636#3 AATCTGGCTTAACTGCTTTTGATGGTGTTCCTGTTTTCCAGTCAGACCTAT---TGGTTG 286
** ** * * * * * * * * ** * * * ** **
consensus_9636#0 CTCAAACCCTGTGGTATCACTGCAAGAACAAAATTATGCTGATACCTCATTAATATGTTG 532
consensus_9636#2 CTCAAACCCGGGGGTATCACTGCAAGAACAAAATTATGCTGATACCTCATTAATATGTGG 392
consensus_9636#1 CTCAAACCCTGGGGTATCACTGCAAGAACAAAATTATGCTGATACCTCATTAATATGGTG 373
consensus_9636#3 TTAAGAAACAGAAGAAGCGTTACT-GTCCGATATATTTTCAAAAGCTCAGGAGGACATAG 345
* * * * * * * * * * * * * ** * * * **** * * *
consensus_9636#0 GTTGAGGCTTTTCCCAGGGGGTATAAAGATCAAGTCATCCCAACCAGAATTCCTCTCATT 592
consensus_9636#2 GTTGAGGCTTTTCCCAGGGG-TATAAAGATCAAGTCATCCCAAC-AGAATTCCTCTCATT 450
consensus_9636#1 GTTGAGGCTTTTCCCAGGGGGAATAAAGATCCAGTCATCCCAACCAAAATTCCTCTCATT 433
consensus_9636#3 AAAGAGAACTTAC--AAAGGCTTCTAAAAC-------TTCTAG--AGGATCTGCCTTATC 394
*** ** * * ** ** * * * * * ** ** **
consensus_9636#0 CATCTCCATTTTCTTCAAGACATCCTCCAAACTCCCAACCATGATTTGCTTAGATAAGGC 652
consensus_9636#2 CATCTCCATTTTCTTCAAGA-ATTCTCCAAA-TCCCAAC-ATGATTGTGTTCGATAGGGA 507
consensus_9636#1 CATCTCCATTTTCTTCAAGACATCCTCCAAACTCCCAACCATGATTTGCTTAGATAAGGC 493
consensus_9636#3 TAAGCAAATCATG----------------------------------------------- 407
* ** *
consensus_9636#0 AGATCCTCTAGAAGTTTTAGAAGCCTTTGTAAGTTCTCTTTCTATGTCCTCCTGAGCTAA 712
consensus_9636#2 G----------------------------------------------------------- 508
consensus_9636#1 AAATCCTCTAGAAGATTTACAAGCCTTTGTAAGTTCTCTTTCAAAGGCCTCCTT--TTGA 551
consensus_9636#3 ------------------------------------------------------------
consensus_9636#0 GAAGGCGAAAATGGTGAAGACCTAAATCAGACCGGGTAAACTACATGAAAGAAATTGAAG 772
consensus_9636#2 ------------------------------------------------------------
consensus_9636#1 AAATATATCGGACAGTAACGCTTCTTCTGGTTCATAACAACCCAATATGTCTAACTGGAA 611
consensus_9636#3 ------------------------------------------------------------
consensus_9636#0 CCTGGCAAACCTTTTGAA-------------- 790
consensus_9636#2 --------------------------------
consensus_9636#1 AACAGGAACACCATCAAAAGCATTTAAGCCAT 643
consensus_9636#3 --------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||