These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_964#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 616 fasta sequence [TTTTTTTTTTTTTTTAAATTGAAACTTCATTTATTATGCATATATCAAGGCCTTATATGCAGAGTACATTTGTATACACACAAGCTTCAAATTTCAAGATCCTAGGCTAGAATATGATGATGTCATATATCAAGTTTATGACCAAAAGTTGCATACATCATCAGATATCTTACAATCTTCTTTCTAACNCNNCCTGTGTGCTGCGTCCCCTCTGGGCTCACCTAAACCAAAGGCTTATCGGAATCCCGGNCGAAACCCTCCGGGAGGGAGGGGGGGGCCCCCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACACAATTCGCCCCCCCATATTAAGGGGGGGGGGGGGTTTTTATTTACCCCCGCCCCCCTCCTATTTTGGGGGGGGGGGTGTTTTTTTTTAAAAAAAAACAACCCCCNGGGGGGGGGGGGGGGAAAAAAAAAACCCCCCCCGGGGGGGGGGGGCCCCCCCCCCCCCACCCTATATAAATTATCCCCCCCCCCCTCCGTCTGGGGGGGAAAAAAAAAAAGAAAAAAAACCCCTCTTTTTTTTTTTTTCGGGGGGGGGGGGGGGGGGGGGGGGGGNNNANAANNAAAAAAAAAAAAAAA] [+] EMBL CA761778 [TTTTTTTTTTTTTTTAAATTGAAACTTCATTTATTATGCATATATCAAGGCCTTATATGCAGAGTACATTTGTATACACACAAGCTTCAAATTTCAAGATCCTAGGCTAGAATATGATGATGTCATATATCAAGTTTATGACCAAAAGTTGCATACATCATCAGATATCTTACAATCTTCTTTCTAACNCNNCCTGTGTGCTGCGTCCCCTCTGGGCTCACCTAAACCAAAGGCTTATCGGAATCCCGGNCGAAACCCTCCGGGAGGGAGGGGGGGGCCCCCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACACAATTCGCCCCCCCATATTAAGGGGGGGGGGGGGTTTTTATTTACCCCCGCCCCCCTCCTATTTTGGGGGGGGGGGTGTTTTTTTTTAAAAAAAAACAACCCCCNGGGGGGGGGGGGGGGAAAAAAAAAACCCCCCCCGGGGGGGGGGGGCCCCCCCCCCCCCACCCTATATAAATTATCCCCCCCCCCCTCCGTCTGGGGGGGAAAAAAAAAAAGAAAAAAAACCCCTCTTTTTTTTTTTTTCGGGGGGGGGGGGGGGGGGGGGGGGGGNNNANAANNAAAAAAAAAAAAAAA] consensusID : consensus_964#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 147 fasta sequence [AAGATATCTGATGATGTATGCAACTTTTGGTCATAAACTTGATATATGACATCATCATATTCTAGCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCG] [+] EMBL CF317652 [AAGATATCTGATGATGTATGCAACTTTTGGTCATAAACTTGATATATGACATCATCATATTCTAGCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_964#0 TTTTTTTTTTTTTTTAAATTGAAACTTCATTTATTATGCATATATCAAGGCCTTATATGC 60 consensus_964#1 ------------------------------------------------------------ consensus_964#0 AGAGTACATTTGTATACACACAAGCTTCAAATTTCAAGATCCTAGGCTAGAATATGATGA 120 consensus_964#1 ------------------------------------------------------------ consensus_964#0 TGTCATATATCAAGTTTATGACCAAAAGTTGCATACATCATCAGATATCTTACAATCTTC 180 consensus_964#1 ------------------------------------------------------------ consensus_964#0 TTTCTAACNCNNCCTGTGTGCTGCGTCCCCTCTGGGCTCACCTAAACCAAAGGCTTATCG 240 consensus_964#1 -----AAGATATCTGATGATGTATGCAACTTTTGG--TCA--TAAACTTGATATATGACA 51 ** * ** * * * * *** *** ***** * * * consensus_964#0 GAATCCCGGNCGAAACCCTCCGGGAGGGAGGGGGGGGCCCCCCGNNNNNNNNNNNNNNNN 300 consensus_964#1 TCATCATATTCTAG--CCTAAAAAAAAAAAAAAAAAA-------AAAAAAAAAAAAAAAA 102 *** * * *** * * consensus_964#0 NNNNNNNNNNNNNNNNNNNACACAATTCGCCCCCCCATATTAAGGGGGGGGGGGGGTTTT 360 consensus_964#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCG--------------- 147 * * ** **** * ** * consensus_964#0 TATTTACCCCCGCCCCCCTCCTATTTTGGGGGGGGGGGTGTTTTTTTTTAAAAAAAAACA 420 consensus_964#1 ------------------------------------------------------------ consensus_964#0 ACCCCCNGGGGGGGGGGGGGGGAAAAAAAAAACCCCCCCCGGGGGGGGGGGGCCCCCCCC 480 consensus_964#1 ------------------------------------------------------------ consensus_964#0 CCCCCACCCTATATAAATTATCCCCCCCCCCCTCCGTCTGGGGGGGAAAAAAAAAAAGAA 540 consensus_964#1 ------------------------------------------------------------ consensus_964#0 AAAAAACCCCTCTTTTTTTTTTTTTCGGGGGGGGGGGGGGGGGGGGGGGGGGNNNANAAN 600 consensus_964#1 ------------------------------------------------------------ consensus_964#0 NAAAAAAAAAAAAAAA 616 consensus_964#1 ---------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||