cluster # 9642

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Oryza sativa
cluster # 9642 cluster # 9642 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9642#0 length = 684 sequences # 3

consensus_9642#1 length = 525 sequences # 2
consensus_9642#2 length = 420 sequences # 1

consensusID : consensus_9642#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 684
fasta sequence

                              [ACGACCACACATAAGCTTCTCCCTCGATCTCTCCTACAAGCCACACATGAGCAACGCAGCGGCCTCGGCCCCTACGAGCAACCACAAGCCGACAACGATGGTGGCGGCAACCCCGTCCGACGAGCAACGACCTCAGGCTCATCGAGTAGTGAGAGAAGCAACGGCCTCGGCCCAACGGCAAGCAGTGGCCTTGGCGAGTAACGATCTCGGTCTCATTGAGCAGCAGGAGAGGCGACAACCTCGGCACCGATAAGCAACGGCCCCAGTGAGTAGCGACTTTGGCATTGTTGTGCGGCAGGAGAGGCAACGGCCTCGGCACAGGCAGTGGCGACCCCAGTGAGTTCAGGCCTCGGCCTCGGCAGGTAGCAGGAGTGGTGGCGTCCTCGTCCTCAGCCTCGAGCAAGCAACTAGGTACGGCGGCATTGGTGACCTCAGCATGTTGGTGATTTTAATTTCTTTGGTTGTCACTGAGACCTGAATGGTTCACATATTTTCTTTTTTATTTAGTTTTAAATGTTTTTTTTTATTTAGGTATGCATCTGGGCATGCTGTGGGTATTGATTTGGGTATCAATATGTGATTTGGACAGAGCCGACTCGAATTGAGCTTCTTTCTGTTTTGTGATATAAATCGAGGCTTAGGAGACACTGGCAATGTGATCCTATTAAGGTTGGCTGGAAAAAA]

[+] EMBL AK062965             [ACGACCACACATAAGCTTCTCCCTCGATCTCTCCTACAAGCCACACATGAGCAACGCAGCGGCCTCGGCCCCTACGAGCAACCACAAGCCGACAACGATGGTGGCGGCAACCCCGTCCGACGAGCAACGACCTCAGGCTCATCGAGTAGTGAGAGAAGCAACGGCCTCGGCCCAACGGCAAGCAGTGGCCTTGGCGAGTAACGATCTCGGTCTCATTGAGCAGCAGGAGAGGCGACAACCTCGGCACCGATAAGCAACGGCCCCAGTGAGTAGCGACTTTGGCATTGTTGTGCGGCAGGAGAGGCAACGGCCTCGGCACAGGCAGTGGCGACCCCAGTGAGTTCAGGCCTCGGCCTCGGCAGGTAGCAGGAGTGGTGGCGTCCTCGTCCTCAGCCTCGAGCAAGCAACTAGGTACGGCGGCATTGGTGACCTCAGCATGTTGGTGATTTTAATTTCTTTGGTTGTCACTGAGACCTGAATGGTTCACATATTTTCTTTTTTATTTAGTTTTAAATGTTTTTTTTTATTTAGGTATGCATCTGGGCATGCTGTGGGTATTGATTTGGGTATCAATATGTGATTTGGACAG                                                                                               ]
[+] EMBL OS1321832            [                                                                                                                 CGTCCGACGAGCAACGACCTCAGGCTCATCGAGTAGTGAGAGAAGCAACGGCCTCGGCCCAACGGCAAGCAGTGGCCTTGGCGAGTAACGATCTCGGTCTCATTGAGCAGCAGGAGAGGCGACAACCTCGGCACCGATAAGCAACGGCCCCAGTGAGTAGCGACTTTGGCATTGTTGTGCGGCAGGAGAGGCAACGGNCTCGGCACAGGCAGTGGCGACCCCAGTGAGTTCAGGCCTCGGCCTCGGCAGGTAGCAGGAGTGGTGGCGTCCTCGTCCTCAGCCTCGAGCAAGCAACTAGGTACGGCGGCATTTGTGACCTCAACATG                                                                                                                                                                                                                                                     ]
[+] EMBL AU174384             [                                                                                                                                                                                                                                                             GCAACGGCCCCAGTGAGTAGCGACTTTGGCATTGTTGTGCGGCAGGAGAGGCAACGGCCTCGGCACAGGCAGTGGCGACCCCAGTGAGTTCAGGCCTCGGCCTCGGCAGGTAGCAGGAGTGGTGGCGTCCTCGTCCTCAGCCTCGAGCAAGCAACTAGGTACGGCGGCATTGGTGACCTCAGCATGTTGGTGATTTTAATTTCTTTGGTTGTCACTGAGACCTGAATGGTTCACATATTTTCTTTTTTATTTAGTTTTAAATGTTTTTTTTTATTTAGGTATGCATCTGGGCATGCTGTGGGTATTGATTTGGGTATCAATATGTGATTTGGACAGAGCCGACTCGAATTGAGCTTCTTTCTGTTTTGTGATATAAATCGAGGCTTAGGAGACACTGGCAATGTGATCCTATTAAGGTTGGCTGGAAAAAA]




>consensus_9642#0
ACGACCACACATAAGCTTCTCCCTCGATCTCTCCTACAAGCCACACATGAGCAACGCAGC
GGCCTCGGCCCCTACGAGCAACCACAAGCCGACAACGATGGTGGCGGCAACCCCGTCCGA
CGAGCAACGACCTCAGGCTCATCGAGTAGTGAGAGAAGCAACGGCCTCGGCCCAACGGCA
AGCAGTGGCCTTGGCGAGTAACGATCTCGGTCTCATTGAGCAGCAGGAGAGGCGACAACC
TCGGCACCGATAAGCAACGGCCCCAGTGAGTAGCGACTTTGGCATTGTTGTGCGGCAGGA
GAGGCAACGGCCTCGGCACAGGCAGTGGCGACCCCAGTGAGTTCAGGCCTCGGCCTCGGC
AGGTAGCAGGAGTGGTGGCGTCCTCGTCCTCAGCCTCGAGCAAGCAACTAGGTACGGCGG
CATTGGTGACCTCAGCATGTTGGTGATTTTAATTTCTTTGGTTGTCACTGAGACCTGAAT
GGTTCACATATTTTCTTTTTTATTTAGTTTTAAATGTTTTTTTTTATTTAGGTATGCATC
TGGGCATGCTGTGGGTATTGATTTGGGTATCAATATGTGATTTGGACAGAGCCGACTCGA
ATTGAGCTTCTTTCTGTTTTGTGATATAAATCGAGGCTTAGGAGACACTGGCAATGTGAT
CCTATTAAGGTTGGCTGGAAAAAA

consensusID : consensus_9642#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 525
fasta sequence

                              [TTCTCCCTCGATCTCTCCTACAAGCCACACATGAGCAACGCAGCGGCCTCGGCCCCTACGAGCAACCACAAGCCGACAACGATGGTGGCGGCAACCCCGTCCGACGAGCAACGACCTCAGGCTCATCGAGTAGTGAGAGAAGCAACGGCCTCGGCCCAACGGCAAGCAGTGGCCTTGGCGAGTAACGATCTCGGTCTCATTGAGCAGCAGGAGAGGCGACAACCTCGGCACCGATAAGCAACGGCCCCAGTGAGTAGCGACTTTGGCATTGTTGTGCGGCAGGAGAGGCAACGGCCTCGGCACAGGCAGTGGCGACCCCAGTGAGTTCAGGCCTCGGCCTCGGCAGGTAGCAGGAGTGGTGGCGTCCTCGTCCTCAGCCTCGAGCAAGCAACTAGGTATGCATCTGGGCATGCTGTGGGTATTGATTTGGGTATCAATATGTGATTTGGACAGAGCCGACTCGAATTGAGCTTCTTTCTGTTTTGTGATATAAATCGAGGCTTAGGAGCCAAAAAAAAAAAAAAA]

[+] EMBL AU198154             [TTCTCCCTCGATCTCTCCTACAAGCCACACATGAGCAACGCAGCGGCCTCGGCCCCTACGAGCAACCACAAGCCGACAACGATGGTGGCGGCAACCCCGTCCGACGAGCAACGACCTCAGGCTCATCGAGTAGTGAGAGAAGCAACGGCCTCGGCCCAACGGCAAGCAGTGGCCTTGGCGAGTAACGATCTCGGTCTCATTGAGCAGCAGGAGAGGCGACAACCTCGGCACCGATAAGCAACGGCCCCAGTGAGTAGCGACTTTGGCATTGTTGTGCGGCAGGAGAGGCAACGGCCTCGGCACAGGCAGTGGCGACCCCAGTGAGTTCAGGCCTCGGCCTCGGCAGGTAGCAGGAGTGGTGGCGTCCTCGTCCTCAGCCTCGAGCAAGCAACTAGGTATGCATCTGGGCATGCTGTGGGTATTGATTTGG                                                                                               ]
[+] EMBL AU198155             [                                                                                                   TCCGACGAGCAACGACCTCAGGCTCATCGAGTAGTGAGAGAAGCAACGGCCTCGGCCCAACGGCAAGCAGTGGCCTTGGCGAGTAACGATNTCGGTNTCATTGAGCAGCAGGAGAGGCGACAACCTCGGCACCGATAAGCAACGGCCCCAGTGAGTAGCGACTTTGGCATTGTTGTGCGGCAGGANAGGCAACGGCCTCGGCACAGGCAGTGGCGACCCCAGTGAGTTCAGGCCTCGGCCTCGGCAGGTAGCAGGAGTGGTGGCGTCCTCGTCCTCAGCCTCGAGCAAGCAACTAGGTATGCATCTGGGCATGCTGTGGGTATTGATTTGGGTATCAATATGTGATTTGGACAGAGCCGACTCGAATTGAGCTTCTTTCTGTTTTGTGATATAAATCGAGGCTTAGGAGCCAAAAAAAAAAAAAAA]




>consensus_9642#1
TTCTCCCTCGATCTCTCCTACAAGCCACACATGAGCAACGCAGCGGCCTCGGCCCCTACG
AGCAACCACAAGCCGACAACGATGGTGGCGGCAACCCCGTCCGACGAGCAACGACCTCAG
GCTCATCGAGTAGTGAGAGAAGCAACGGCCTCGGCCCAACGGCAAGCAGTGGCCTTGGCG
AGTAACGATCTCGGTCTCATTGAGCAGCAGGAGAGGCGACAACCTCGGCACCGATAAGCA
ACGGCCCCAGTGAGTAGCGACTTTGGCATTGTTGTGCGGCAGGAGAGGCAACGGCCTCGG
CACAGGCAGTGGCGACCCCAGTGAGTTCAGGCCTCGGCCTCGGCAGGTAGCAGGAGTGGT
GGCGTCCTCGTCCTCAGCCTCGAGCAAGCAACTAGGTATGCATCTGGGCATGCTGTGGGT
ATTGATTTGGGTATCAATATGTGATTTGGACAGAGCCGACTCGAATTGAGCTTCTTTCTG
TTTTGTGATATAAATCGAGGCTTAGGAGCCAAAAAAAAAAAAAAA

consensusID : consensus_9642#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 420
fasta sequence

                              [GAGTTCAGGCCTCGGCCTCGGCAGGTAGCAGGAGTGGTGGCGTCCTCGTCCTCAGCCTCGAGCAAGCAACTAGGTATGCATCTGGGCATGCTGTGGGTATTGATTTGGGTATCAATATGTGATTTGGACAGAGCCGACTCGAATTGAGCTTCTTTCTGTTTTGTGATATAAATCGAGGCTTAGGAGACACTGGCAATGTGATCCTATTAAGGTTGGCTGGACTTTTGGATTTGTGTGATTTTTTTTCTTTCCTTGTTTTCCCTTTTCTAAGTAACTATAGAGCGTGCACGTGCAAGGCACGTTGATACATAGAATGACAGCTCACTGAAAATTCAGTTCATCCTTAGACCATTCTGTAAAGGAGAAGCTTAGCAAACCGTTTCTTCAGCTATGAAATGATAAATCAAAATAAACAGAGTG]

[+] EMBL AK062644             [GAGTTCAGGCCTCGGCCTCGGCAGGTAGCAGGAGTGGTGGCGTCCTCGTCCTCAGCCTCGAGCAAGCAACTAGGTATGCATCTGGGCATGCTGTGGGTATTGATTTGGGTATCAATATGTGATTTGGACAGAGCCGACTCGAATTGAGCTTCTTTCTGTTTTGTGATATAAATCGAGGCTTAGGAGACACTGGCAATGTGATCCTATTAAGGTTGGCTGGACTTTTGGATTTGTGTGATTTTTTTTCTTTCCTTGTTTTCCCTTTTCTAAGTAACTATAGAGCGTGCACGTGCAAGGCACGTTGATACATAGAATGACAGCTCACTGAAAATTCAGTTCATCCTTAGACCATTCTGTAAAGGAGAAGCTTAGCAAACCGTTTCTTCAGCTATGAAATGATAAATCAAAATAAACAGAGTG]




>consensus_9642#2
GAGTTCAGGCCTCGGCCTCGGCAGGTAGCAGGAGTGGTGGCGTCCTCGTCCTCAGCCTCG
AGCAAGCAACTAGGTATGCATCTGGGCATGCTGTGGGTATTGATTTGGGTATCAATATGT
GATTTGGACAGAGCCGACTCGAATTGAGCTTCTTTCTGTTTTGTGATATAAATCGAGGCT
TAGGAGACACTGGCAATGTGATCCTATTAAGGTTGGCTGGACTTTTGGATTTGTGTGATT
TTTTTTCTTTCCTTGTTTTCCCTTTTCTAAGTAACTATAGAGCGTGCACGTGCAAGGCAC
GTTGATACATAGAATGACAGCTCACTGAAAATTCAGTTCATCCTTAGACCATTCTGTAAA
GGAGAAGCTTAGCAAACCGTTTCTTCAGCTATGAAATGATAAATCAAAATAAACAGAGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9642#0      ACGACCACACATAAGCTTCTCCCTCGATCTCTCCTACAAGCCACACATGAGCAACGCAGC 60
consensus_9642#1      ----------------TTCTCCCTCGATCTCTCCTACAAGCCACACATGAGCAACGCAGC 44
consensus_9642#2      ------------------------------------------------------------
                                                                                  

consensus_9642#0      GGCCTCGGCCCCTACGAGCAACCACAAGCCGACAACGATGGTGGCGGCAACCCCGTCCGA 120
consensus_9642#1      GGCCTCGGCCCCTACGAGCAACCACAAGCCGACAACGATGGTGGCGGCAACCCCGTCCGA 104
consensus_9642#2      ------------------------------------------------------------
                                                                                  

consensus_9642#0      CGAGCAACGACCTCAGGCTCATCGAGTAGTGAGAGAAGCAACGGCCTCGGCC-CAACGGC 179
consensus_9642#1      CGAGCAACGACCTCAGGCTCATCGAGTAGTGAGAGAAGCAACGGCCTCGGCC-CAACGGC 163
consensus_9642#2      -GAGTTCAGGCCTCGGCCTCGGCAGGTAGCAGGAGTGGTGGCGTCCTCGTCCTCAGCCTC 59
                       ***    * **** * ***  *  ****   ***  *   ** ***** ** ** *  *

consensus_9642#0      AAGCAGTGGCCTTGGCGAGTAACGATCTCGGTCTCAT-TGAGCAGCAGGAGAGGCGACAA 238
consensus_9642#1      AAGCAGTGGCCTTGGCGAGTAACGATCTCGGTCTCAT-TGAGCAGCAGGAGAGGCGACAA 222
consensus_9642#2      GAGCAAGCAACTAGGTATGCA----TCTGGGCATGCTGTGGGTATTGATTTGGGTATCAA 115
                       ****     ** **   * *    *** **  *  * ** * *        **   ***

consensus_9642#0      CCTCGGCACCGATAAGCAACGGCCCCAGTGAGTAGCGACTTTGGCATTGTTGTGCGGCAG 298
consensus_9642#1      CCTCGGCACCGATAAGCAACGGCCCCAGTGAGTAGCGACTTTGGCATTGTTGTGCGGCAG 282
consensus_9642#2      TATGTGATTTGGACAGAGCCGACTCGAATTG--AGCTTCTTT----CTGTTTTGTGATAT 169
                        *  *    *   **   ** * * * *    ***  ****     **** ** *  * 

consensus_9642#0      GAGAGGCAACGGCCTCGGCACAGGCAGTGGCGACCCCAGTGAGTTCAGGCCTCGGCCTCG 358
consensus_9642#1      GAGAGGCAACGGCCTCGGCACAGGCAGTGGCGACCCCAGTGAGTTCAGGCCTCGGCCTCG 342
consensus_9642#2      AAATCGAGGCTTAGGAGACACTGGCAATG-TGATCCTATTAAGGTTGG--CTGGACTTTT 226
                       *   *   *      * *** **** **  ** ** * * ** *  *  ** * * *  

consensus_9642#0      GCAGGTAGCAGGAGTGGTGGCGTCCTCGTCCTCAGCCTCGAGCAAGCAACTAGGTACGGC 418
consensus_9642#1      GCAGGTAGCAGGAGTGGTGGCGTCCTCGTCCTCAGCCTCGAGCAAGCAACTAGGTA---- 398
consensus_9642#2      G-GATTTGTGTGATTTTTTTTCTTTCCTTGTTTTCCCTTTTCTAAGTAACTATAGA---- 281
                      *    * *   ** *  *    *   * *  *   ***     *** *****   *    

consensus_9642#0      GGCATTGGTGACCTCAGCATGTTGGTGATTTTAATTTCTTTGGTTGTCACTGAGACCTGA 478
consensus_9642#1      ------------------------------------------------------------
consensus_9642#2      -GCGTGCACGTGCAAGGCACGTTG------------------------------------ 304
                                                                                  

consensus_9642#0      ATGGTTCACATATTTTCTTTTTTATTTAGTTTTAAATGTTTTTTTTTATTTAGGTATGCA 538
consensus_9642#1      --------------------------------------------------------TGCA 402
consensus_9642#2      -------------------------------------------------------ATACA 309
                                                                              * **

consensus_9642#0      TCTGGGCATGCTGTGGGTATTGATTTGGGT-ATCAATATGTGATTTGGACAGAGCCGACT 597
consensus_9642#1      TCTGGGCATGCTGTGGGTATTGATTTGGGT-ATCAATATGTGATTTGGACAGAGCCGACT 461
consensus_9642#2      TAGAATGACAGC-TCACTGAAAATTCAGTTCATCCTTAGACCATTCTGTAAAGGAGAAGC 368
                      *      *     *   *    ***  * * ***  **    ***  *  *  *   *  

consensus_9642#0      CGAATTGAGC-TTCTTTCTGTTTTGTGAT-ATAAATCGAGGCTTAGGAGACACTGGCAAT 655
consensus_9642#1      CGAATTGAGC-TTCTTTCTGTTTTGTGAT-ATAAATCGAGGCTTAGGAGCCAAAAAAAAA 519
consensus_9642#2      TTAGCAAACCGTTTCTTCAGCTATGAAATGATAAATCAAAATAAACAGAGTG-------- 420
                        *    * * **  *** * * **  ** ******* *     *               

consensus_9642#0      GTGATCCTATTAAGGTTGGCTGGAAAAAA 684
consensus_9642#1      AAAAAA----------------------- 525
consensus_9642#2      -----------------------------