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Oryza sativa
cluster # 9644 cluster # 9644       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9644#0 length = 1418 sequences # 5  
consensus_9644#1 length = 375 sequences # 1  

consensusID : consensus_9644#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1418
fasta sequence
                              [TCTCTCTCTCGCGTGGCTTCCTACCGAAATCTTCGAATCCATCGTCGTCGAGAAGAGACGAGGACGCCCTCCCCAGTGGCGGCGAGCGCCCCCCCCCCCCACCCCCACCCCCGAGGAAGAAGAAGAGGAGGAGGAAGGTTTTGCGCGCCGTTCGCGGATTCCTCTCCGTCCTCACGCCCCGGATTCGGTTCGTCCCGCGGTCCCGACTGAAGAATGAGGATGGACAGGAATGAGGAAGAGATGGTCACGAATGACTCGGACCCTCTTCTCAAGAGGGAAAACGAGGAGGCAGAGTCATCGTCGCAGCTGACACCGCCTAAGCCAGCAACCTTGAGCGCGCTGGAGATTGAGGATGAGGAGACCGACGGTTCTTCTGCAGGGTGCTGCCGCATTTGTCTCGAGACTGATTCTGAGTTAGGTGATGAACTGATATCACCTTGCATGTGCAAGGGAACTCAACAATTTGTTCACCGCTCATGCCTTGACCACTGGAGATCTGTTAAGGAAGGATTTGCATTTTCACATTGCACAACATGCAAAGCTCAATTCCATCTCCGAGTGGAAACTTGGGAGGACAATTCATGGCGTAAAATGAAGTTCCGGATATTTGTTGCAAGAGATGTTATCCTTGTGTTTCTTGCTGTACAACTTACTATTGCTATGATTGGTGCAATTTCTTACTTTCTAGATAGGGATGGAAGTTTCAGAAACAGTTTCAGTGATGGTTGGGATCGCTTCTTGTCAAAACATCCAATACCATTCTATTACTGCATAGGTGTTGTTGTTTTCTTTGTGCTACTCGGATTCTTCGGGTTGATACTGCATTGTTCGTCCTTCAATGATAACCAAGACCCATGCCTAGCTGGGTGCCGGAACTGCTGCTATGGTTGGGGCGTCCTGGACTGCCTGCCTGCTTCTCTGGAGGCCTGCTTTGCCCTGGTGGTGGTTTTC-GTTGTC-GTGTTCGCCATCCTCGGTATCGCATACGGTTTCCTCGCGGC-AACTATGGCTGTCCAAAGAATCTGGCAGCGGCATTACCACATCTTGACCAAAAGAGAACTCACAAAGGAGTACGTGGTGGAAGATCTTCATGGCAGCTACACGCCACCGAAGCTTGATCCAGAGCATGAGGAGCGGCTGAAAATGCTGAAGCTCCTCTAGCCTCTCATGGCAATTACAGAACTACTACCGCCTGTATATCTGCTCCTCCTCTTTCGCTTCAGATTAACAAACGGCAATCTGTTGTACACCAGTGTAAATATTGAGTACGTGTGCCGAAACAAAATGTCTCGGGTGAGTGTTTGTTGTCAATTTAATTCGATCGATATGTTTACCTTGTCGCGTGAGTGTTCCTCGATCATACTGCTGCTGGAACTACACTATGAACAACTAGTAGTAATTTTATCCTTGCGA----AAAAAAAA]

[+] EMBL AK072915             [TCTCTCTCTCGCGTGGCTTCCTACCGAAATCTTCGAATCCATCGTCGTCGAGAAGAGACGAGGACGCCCTCCCCAGTGGCGGCGAGCGCCCCCCCCCCCCACCCCCACCCCCGAGGAAGAAGAAGAGGAGGAGGAAGGTTTTGCGCGCCGTTCGCGGATTCCTCTCCGTCCTCACGCCCCGGATTCGGTTCGTCCCGCGGTCCCGACTGAAGAATGAGGATGGACAGGAATGAGGAAGAGATGGTCACGAATGACTCGGACCCTCTTCTCAAGAGGGAAAACGAGGAGGCAGAGTCATCGTCGCAGCTGACACCGCCTAAGCCAGCAACCTTGAGCGCGCTGGAGATTGAGGATGAGGAGACCGACGGTTCTTCTGCAGGGTGCTGCCGCATTTGTCTCGAGACTGATTCTGAGTTAGGTGATGAACTGATATCACCTTGCATGTGCAAGGGAACTCAACAATTTGTTCACCGCTCATGCCTTGACCACTGGAGATCTGTTAAGGAAGGATTTGCATTTTCACATTGCACAACATGCAAAGCTCAATTCCATCTCCGAGTGGAAACTTGGGAGGACAATTCATGGCGTAAAATGAAGTTCCGGATATTTGTTGCAAGAGATGTTATCCTTGTGTTTCTTGCTGTACAACTTACTATTGCTATGATTGGTGCAATTTCTTACTTTCTAGATAGGGATGGAAGTTTCAGAAACAGTTTCAGTGATGGTTGGGATCGCTTCTTGTCAAAACATCCAATACCATTCTATTACTGCATAGGTGTTGTTGTTTTCTTTGTGCTACTCGGATTCTTCGGGTTGATACTGCATTGTTCGTCCTTCAATGATAACCAAGACCCATGCCTAGCTGGGTGCCGGAACTGCTGCTATGGTTGGGGCGTCCTGGACTGCCTGCCTGCTTCTCTGGAGGCCTGCTTTGCCCTGGTGGTGGTTTTC GTTGTC GTGTTCGCCATCCTCGGTATCGCATACGGTTTCCTCGCGGC AACTATGGCTGTCCAAAGAATCTGGCAGCGGCATTACCACATCTTGACCAAAAGAGAACTCACAAAGGAGTACGTGGTGGAAGATCTTCATGGCAGCTACACGCCACCGAAGCTTGATCCAGAGCATGAGGAGCGGCTGAAAATGCTGAAGCTCCTCTAGCCTCTCATGGCAATTACAGAACTACTACCGCCTGTATATCTGCTCCTCCTCTTTCGCTTCAGATTAACAAACGGCAATCTGTTGTACACCAGTGTAAATATTGAGTACGTGTGCCGAAACAAAATGTCTCGGGTGAGTGTTTGTTGTCAATTTAATTCGATCGATATGTTTACCTTGTCGCGTGAGTGTTCCTCGATCATACTGCTGCTGGAACTACACTATGAACAACTAGTAGTAATTTT                      ]
[+] EMBL AU174649             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CCGGATATTTGTTGCAAGAGATGTTATCCTTGTGTTTCTTGCTGTACAACTTACTATTGCTATGATTGGTGCAATTTCTTACTTTCTAGATAGGGATGGAAGTTTCAGAAACAGTTTCAGTGATGGTTGGGATCGCTTCTTGTCAAAACATCCAATACCATTCTATTACTGCATAGGTGTTGTTGTTTTCTTTGTGCTACTCGGATTCTTCGGGTTGATACTGCATTGTTCGTCCTTCAATGATAACCAAGACCCATGCCTAGCTGGGTGCCGGAACTGCTGCTATGGTTGGGGCGTCCTGGACTGCCTGCCTGCTTCTCTGGAGGCCTGCTTTGCCCTGGTGGTGGTTTTC GTTGTC GTGTTCGCCATCCTCGGTATCGCATACGGTTTCCTC                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BE230718             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                cgagATGATTGGNGCAATTTCTTACTTTCTAGATAGGGATGGAAGTTTCAGAAACAGTTTCAGTGATGGTTGGGATCGCTTCTTGTCAAAACATCCAATACCATTCTATTACTGCATAGGTGTTGTTGTTTTCTTTGTGCTACTCGGATTCTTCGGGTTGATACTGCATTGTTCGTCCTTCAATGATAACCAAGACCCATGCCTAGCTGGGTGCCGGAACTGCTGCTATGGTTGGGGCGTCCTGGRCTGCCTGCCTGCTTCTCTGGAGGCCTGCTTTGCCCTGGTGGTGG TTTC GTTGTC GTGTTCG CATCCTYGGTATC                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BI811933             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CTGGA GCCTGCTTTG CCTGGT GT GTTTTCAGTTGTCAGTGTTC CCATCCTCGGTATCGCATACGGTTTCCTC CGGCAAACTATGGCTGTCCAAAGAATCTGGCAGCGGCATTACCACATCTTGACC AAAGAGAACTCACAAAGGAGTACGTGGTGGAAGATCTTCATGGCAGCTACACGCCACCGAAGCTTGATCCAGAGCATGAGGAGCGGCTGAAAATGCTGAAGCTCCTCTAGCCTCTCATGGCAATTACAGAACTACTACCGCCTGTATATCTGCTCCTCCTCTTTCGCTTCAGATTAAC AACGGC ATCTGTTGTACACCAGTGTAAATATTGAGTACGTGTGCCGAAAC AAATGTCTCGGGTGAGTGTTTGCTGTCAATTTAATTCGATCGATATGTTTACCTTGTCGCGTGAGTGTTCCTCGATCATACTGCTGCTGGAACTACACTATGAACAACTAGTAGTAATTTTATCCTTGCGATCCCAAAAAAAA]
[+] EMBL AU174648             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TTCGCCATCCTCGGTATCGCATACGGTTTCCTCGCGGC AACTATGGCTGTCCAAAGAATCTGGCAGCGGCATTACCACATCTTGACCAAAAGAGAACTCACAAAGGAGTACGTGGTGGAAGATCTTCATGGCAGCTACACGCCACCGAAGCTTGATCCAGAGCATGAGGAGCGGCTGAAAATGCTGAAGCTCCTCTAGCCTCTCATGGCAATTACAGAACTACTACCGCCTGTATATCTGCTCCTCCTCTTTCGCTTCAGATTAACAAACGGCAATCTGTTGTACACCAGTGTAAATATTGAGTACGTGTGCCGAAACAAAATGTCTCGGGTGAGTGTTTGTTGTCAATTTAATTCGATCGATATGTTTACCTTGTCGCGTGAGTGTTCCTCGATCATACTGCTGCTGGAACTACACTATGAACAACTAGTAGTAATTTTATCCTTGCAA    AAAAAA  ]


>consensus_9644#0 TCTCTCTCTCGCGTGGCTTCCTACCGAAATCTTCGAATCCATCGTCGTCGAGAAGAGACG AGGACGCCCTCCCCAGTGGCGGCGAGCGCCCCCCCCCCCCACCCCCACCCCCGAGGAAGA AGAAGAGGAGGAGGAAGGTTTTGCGCGCCGTTCGCGGATTCCTCTCCGTCCTCACGCCCC GGATTCGGTTCGTCCCGCGGTCCCGACTGAAGAATGAGGATGGACAGGAATGAGGAAGAG ATGGTCACGAATGACTCGGACCCTCTTCTCAAGAGGGAAAACGAGGAGGCAGAGTCATCG TCGCAGCTGACACCGCCTAAGCCAGCAACCTTGAGCGCGCTGGAGATTGAGGATGAGGAG ACCGACGGTTCTTCTGCAGGGTGCTGCCGCATTTGTCTCGAGACTGATTCTGAGTTAGGT GATGAACTGATATCACCTTGCATGTGCAAGGGAACTCAACAATTTGTTCACCGCTCATGC CTTGACCACTGGAGATCTGTTAAGGAAGGATTTGCATTTTCACATTGCACAACATGCAAA GCTCAATTCCATCTCCGAGTGGAAACTTGGGAGGACAATTCATGGCGTAAAATGAAGTTC CGGATATTTGTTGCAAGAGATGTTATCCTTGTGTTTCTTGCTGTACAACTTACTATTGCT ATGATTGGTGCAATTTCTTACTTTCTAGATAGGGATGGAAGTTTCAGAAACAGTTTCAGT GATGGTTGGGATCGCTTCTTGTCAAAACATCCAATACCATTCTATTACTGCATAGGTGTT GTTGTTTTCTTTGTGCTACTCGGATTCTTCGGGTTGATACTGCATTGTTCGTCCTTCAAT GATAACCAAGACCCATGCCTAGCTGGGTGCCGGAACTGCTGCTATGGTTGGGGCGTCCTG GACTGCCTGCCTGCTTCTCTGGAGGCCTGCTTTGCCCTGGTGGTGGTTTTCGTTGTCGTG TTCGCCATCCTCGGTATCGCATACGGTTTCCTCGCGGCAACTATGGCTGTCCAAAGAATC TGGCAGCGGCATTACCACATCTTGACCAAAAGAGAACTCACAAAGGAGTACGTGGTGGAA GATCTTCATGGCAGCTACACGCCACCGAAGCTTGATCCAGAGCATGAGGAGCGGCTGAAA ATGCTGAAGCTCCTCTAGCCTCTCATGGCAATTACAGAACTACTACCGCCTGTATATCTG CTCCTCCTCTTTCGCTTCAGATTAACAAACGGCAATCTGTTGTACACCAGTGTAAATATT GAGTACGTGTGCCGAAACAAAATGTCTCGGGTGAGTGTTTGTTGTCAATTTAATTCGATC GATATGTTTACCTTGTCGCGTGAGTGTTCCTCGATCATACTGCTGCTGGAACTACACTAT GAACAACTAGTAGTAATTTTATCCTTGCGAAAAAAAAA



consensusID : consensus_9644#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 375
fasta sequence
                              [AGAGGGCGAGACAAGGGGTACGTGGTGGAAGATTTTCATGGCAGCTACCCCCCCCCGAAGCTTGATCCAGAGCCTGAGGAGCGGCTGAAAATGCTGAAGCTCCTCTAGCCTCTCATGGCAATTACAGAACTACTACCGCCCGGAAATTTGCTCCTCCTCTTTCGCTTTAGATTAACAAACGGCAATTTGTTGTACCCCAGTGTAAATATTGAGTACGTGTGCCGAAACAAAATGTTTTGGGTGAGTGTTTGCTGTCCATTTAATTCGATCGATATGTTTACCCTGTCGCGTGAGTGTTCCTCGATCATACTGCTGCTGGAACTACCCTATGAACAACTAGTAGTAATTTTATCCCTGAAAAAAAAAAAAAAAAAA]

[-] EMBL CA763298             [AGAGGGCGAGACAAGGGGTACGTGGTGGAAGATTTTCATGGCAGCTACCCCCCCCCGAAGCTTGATCCAGAGCCTGAGGAGCGGCTGAAAATGCTGAAGCTCCTCTAGCCTCTCATGGCAATTACAGAACTACTACCGCCCGGAAATTTGCTCCTCCTCTTTCGCTTTAGATTAACAAACGGCAATTTGTTGTACCCCAGTGTAAATATTGAGTACGTGTGCCGAAACAAAATGTTTTGGGTGAGTGTTTGCTGTCCATTTAATTCGATCGATATGTTTACCCTGTCGCGTGAGTGTTCCTCGATCATACTGCTGCTGGAACTACCCTATGAACAACTAGTAGTAATTTTATCCCTGAAAAAAAAAAAAAAAAAA]


>consensus_9644#1 AGAGGGCGAGACAAGGGGTACGTGGTGGAAGATTTTCATGGCAGCTACCCCCCCCCGAAG CTTGATCCAGAGCCTGAGGAGCGGCTGAAAATGCTGAAGCTCCTCTAGCCTCTCATGGCA ATTACAGAACTACTACCGCCCGGAAATTTGCTCCTCCTCTTTCGCTTTAGATTAACAAAC GGCAATTTGTTGTACCCCAGTGTAAATATTGAGTACGTGTGCCGAAACAAAATGTTTTGG GTGAGTGTTTGCTGTCCATTTAATTCGATCGATATGTTTACCCTGTCGCGTGAGTGTTCC TCGATCATACTGCTGCTGGAACTACCCTATGAACAACTAGTAGTAATTTTATCCCTGAAA AAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9644#0      TCTCTCTCTCGCGTGGCTTCCTACCGAAATCTTCGAATCCATCGTCGTCGAGAAGAGACG 60
consensus_9644#1      ------------------------------------------------------------
                                                                                  

consensus_9644#0      AGGACGCCCTCCCCAGTGGCGGCGAGCGCCCCCCCCCCCCACCCCCACCCCCGAGGAAGA 120
consensus_9644#1      ------------------------------------------------------------
                                                                                  

consensus_9644#0      AGAAGAGGAGGAGGAAGGTTTTGCGCGCCGTTCGCGGATTCCTCTCCGTCCTCACGCCCC 180
consensus_9644#1      ------------------------------------------------------------
                                                                                  

consensus_9644#0      GGATTCGGTTCGTCCCGCGGTCCCGACTGAAGAATGAGGATGGACAGGAATGAGGAAGAG 240
consensus_9644#1      ------------------------------------------------------------
                                                                                  

consensus_9644#0      ATGGTCACGAATGACTCGGACCCTCTTCTCAAGAGGGAAAACGAGGAGGCAGAGTCATCG 300
consensus_9644#1      ------------------------------------------------------------
                                                                                  

consensus_9644#0      TCGCAGCTGACACCGCCTAAGCCAGCAACCTTGAGCGCGCTGGAGATTGAGGATGAGGAG 360
consensus_9644#1      ------------------------------------------------------------
                                                                                  

consensus_9644#0      ACCGACGGTTCTTCTGCAGGGTGCTGCCGCATTTGTCTCGAGACTGATTCTGAGTTAGGT 420
consensus_9644#1      ------------------------------------------------------------
                                                                                  

consensus_9644#0      GATGAACTGATATCACCTTGCATGTGCAAGGGAACTCAACAATTTGTTCACCGCTCATGC 480
consensus_9644#1      ------------------------------------------------------------
                                                                                  

consensus_9644#0      CTTGACCACTGGAGATCTGTTAAGGAAGGATTTGCATTTTCACATTGCACAACATGCAAA 540
consensus_9644#1      ------------------------------------------------------------
                                                                                  

consensus_9644#0      GCTCAATTCCATCTCCGAGTGGAAACTTGGGAGGACAATTCATGGCGTAAAATGAAGTTC 600
consensus_9644#1      ------------------------------------------------------------
                                                                                  

consensus_9644#0      CGGATATTTGTTGCAAGAGATGTTATCCTTGTGTTTCTTGCTGTACAACTTACTATTGCT 660
consensus_9644#1      ------------------------------------------------------------
                                                                                  

consensus_9644#0      ATGATTGGTGCAATTTCTTACTTTCTAGATAGGGATGGAAGTTTCAGAAACAGTTTCAGT 720
consensus_9644#1      ------------------------------------------------------------
                                                                                  

consensus_9644#0      GATGGTTGGGATCGCTTCTTGTCAAAACATCCAATACCATTCTATTACTGCATAGGTGTT 780
consensus_9644#1      ------------------------------------------------------------
                                                                                  

consensus_9644#0      GTTGTTTTCTTTGTGCTACTCGGATTCTTCGGGTTGATACTGCATTGTTCGTCCTTCAAT 840
consensus_9644#1      ------------------------------------------------------------
                                                                                  

consensus_9644#0      GATAACCAAGACCCATGCCTAGCTGGGTGCCGGAACTGCTGCTATGGTTGGGGCGTCCTG 900
consensus_9644#1      ------------------------------------------------------------
                                                                                  

consensus_9644#0      GACTGCCTGCCTGCTTCTCTGGAGGCCTGCTTTGCCCTGGTGGTGGTTTTCGTTGTCGTG 960
consensus_9644#1      ------------------------------------------------------------
                                                                                  

consensus_9644#0      TTCGCCATCCTCGGTATCGCATACGGTTTCCTCGCGGCAACTATGGCTGTCCAAAGAATC 1020
consensus_9644#1      ------------------------------------------------------------
                                                                                  

consensus_9644#0      TGGCAGCGGCATTACCACATCTTGACCAAAAGAGAACTCACAAAGGAGTACGTGGTGGAA 1080
consensus_9644#1      ------------------------------AGAGGGCGAGACAAGGGGTACGTGGTGGAA 30
                                                    ****  *     **** *************

consensus_9644#0      GATCTTCATGGCAGCTACACGCCACCGAAGCTTGATCCAGAGCATGAGGAGCGGCTGAAA 1140
consensus_9644#1      GATTTTCATGGCAGCTACCCCCCCCCGAAGCTTGATCCAGAGCCTGAGGAGCGGCTGAAA 90
                      *** ************** * ** ******************* ****************

consensus_9644#0      ATGCTGAAGCTCCTCTAGCCTCTCATGGCAATTACAGAACTACTACCGCCTGTATATCTG 1200
consensus_9644#1      ATGCTGAAGCTCCTCTAGCCTCTCATGGCAATTACAGAACTACTACCGCCCGGAAATTTG 150
                      ************************************************** * * ** **

consensus_9644#0      CTCCTCCTCTTTCGCTTCAGATTAACAAACGGCAATCTGTTGTACACCAGTGTAAATATT 1260
consensus_9644#1      CTCCTCCTCTTTCGCTTTAGATTAACAAACGGCAATTTGTTGTACCCCAGTGTAAATATT 210
                      ***************** ****************** ******** **************

consensus_9644#0      GAGTACGTGTGCCGAAACAAAATGTCTCGGGTGAGTGTTTGTTGTCAATTTAATTCGATC 1320
consensus_9644#1      GAGTACGTGTGCCGAAACAAAATGTTTTGGGTGAGTGTTTGCTGTCCATTTAATTCGATC 270
                      ************************* * ************* **** *************

consensus_9644#0      GATATGTTTACCTTGTCGCGTGAGTGTTCCTCGATCATACTGCTGCTGGAACTACACTAT 1380
consensus_9644#1      GATATGTTTACCCTGTCGCGTGAGTGTTCCTCGATCATACTGCTGCTGGAACTACCCTAT 330
                      ************ ****************************************** ****

consensus_9644#0      GAACAACTAGTAGTAATTTTATCCTTGCGAAAAAAAAA------- 1418
consensus_9644#1      GAACAACTAGTAGTAATTTTATCCCTGAAAAAAAAAAAAAAAAAA 375
                      ************************ **  *********       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)