cluster # 9645

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Oryza sativa
cluster # 9645 cluster # 9645 Sequences # 6 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9645#0 length = 949 sequences # 3
consensus_9645#1 length = 543 sequences # 1

consensus_9645#2 length = 401 sequences # 1
consensus_9645#3 length = 200 sequences # 1

consensusID : consensus_9645#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 949
fasta sequence

                              [TCGCTGTGATCTGCTCCTCGCACATCATCGTTGCTAATTGTGGAGACTCACGGGCAGTGCTCTGTCGTGGCAAGCAGCCTGTGCCGCTATCAGTGGATCATAAACCTAACAGGGAGGATGAATATGCAAGGATCGAGGCTTATATGTGGCAAGGTTATACAGTGGAATGGCTATCGAGTTTTTGGTGTTCTTGCCATGTCGCGATCAATAGGTGACAGATATCTCAAGCCATGGATAATTCCAGTCCCCGAGATCACTATTGTTCCTCGAGCAAAGGATGACGAATGTCTCGTTCTTGCTAGTGATGGTCTCTGGGACGTCATGTCAAACGAAGAGGTATGCGATGTTGCTCGCAAGCGAATA-TGCTGTGGCACAAGAAGAATGGCACAAACCCAGCATCAGCCCCGCGAAGCGGTGACTCGTCAGATCCGGCAGCTGAAGCAGCTGCTGAGTGCTTGTCGAAGCTTGCTCTCCAGAAGGGGAGCAAGGACAACATTAGCGTCATTGTCGTTGA-CCTCAAGGCACATAGGAAGTTCAAGAGCAAAAGCTAACATCTTCTTGATGAACAGCAACAGTGACAGAATTTCTAGGGATCTACAGAGATTTGGAGAATCCAAATTCGATCGATTTAGAGGACTCCTTTTTAGTACATTACTTAGCCCAGTTCTCCCTCTTATTTTCTTTTACCATTTGACCCTCCCAAGGGCTGTATTCATGTATACGGTACAGATTGCAAAATCCGCACCGGGGTCTATGTTTCCTGATGGCGGTGGATCATCCCCGTTTTCTGTTCTTCTTTCGTTGTTGCCCCCTTATTCTTTTTGTTAAGCTGGGCCATCATGTATCTGGCAAATGTATATTTGAGCCTGTAGGGTACAAAGAAACTGAGTGGTATAAAGGATGATGTACTGCCTTCTCAACTATGAAAAAAAAAACTTGNACCAAACTG]

[+] EMBL CF304401             [TCGCTGTGATCTGCTCCTCGCACATCATCGTTGCTAATTGTGGAGACTCACGGGCAGTGCTCTGTCGTGGCAAGCAGCCTGTGCCGCTATCAGTGGATCATAAACCTAACAGGGAGGATGAATATGCAAGGATCGAGGCTTATATGTGGCAAGGTTATACAGTGGAATGGCTATCGAGTTTTTGGTGTTCTTGCCATGTCGCGATCAATAGGTGACAGATATCTCAAGCCATGGATAATTCCAGTCCCCGAGATCACTATTGTTCCTCGAGCAAAGGATGACGAATGTCTCGTTCTTGCTAGTGATGGTCTCTGGGACGTCATGTCAAACGAAGAGGTATGCGATGTTGCTCGCAAGCGAATACTGCTGTGGCACAAGAAGAATGGCACAAACCCAGCATCAGCCCCGCGAAGCGGTGACTCGTCAGATCCGGCAGCTGAAGCAGCTGCTGAGTGCTTGTCGAAGCTTGCTCTCCAGAAGGGGAGCAAGGACAACATTAGCGTCATTGTCGTTGACCCTCA                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AU174682             [                                                                                                                                                                                                                                                                                              GTCTCGTTCTTGCTAGTGATGGTCTCTGGGACGTCATGTCAAACGAAGAGGTATGCGATGTTGCTCGCAAGCGAATA TGCTGTGGCACAAGAAGAATGGCACAAACCCAGCATCAGCCCCGCGAAGCGGTGACTCGTCAGATCCGGCAGCTGAAGCAGCTGCTGAGTGCTTGTCGAAGCTTGCTCTCCAGAAGGGGAGCAAGGACAACATTAGCGTCATTGTCGTTGA CCTCAAGGCACATAGGAAGTTCAAGAGCAAAAGCTAACATCTTCTTGATGAACAGCAACAGTGACAGAATTTCTAGGGATCTACAGAGATTTGGAGAATCCAAATTCGATCGATTTAGAGGACTCCTTTTTAGTACATTACTTAGCCCAGTTCTCCCTCTTATTTTCTTTTACCATTTGACCCTCCCAAGGGCTGTATTCATGTATACGGTACAGATTGCAAAATCCGCACCGGG                                                                                                                                                                                                        ]
[+] EMBL CA758244             [                                                                                                                                                                                                                                                                                                                                                                                                                  aCCCCTAAAAGCGGTGACTGGGCAGATCCGGCACCTGAAGCACCTGCTGAGTGCTTGTCGAAGCTTGCTCTCCAGAAGGGGAGCAAGGACAACATTACCGTCATTGTCCTTGA CCTCAACGCACATATGAAGTTCAAGAGCAAAAGCTAACATCTTCTTGATGAACAGCAACAGTGACACAATTTCTATGGATCTACACAGATTTGGAGAATCCAAATTCGATCGATTTACACGACTCCTTTTTACTACATTACTTAGCCCAGTTCTCCCTCTTATTTTCTTTTACCATTTGACCCTCCCAAGGGCTGTATTCATGTATACGGTACAGATTGCAAAATCCGCACCGGGGTCTATGTTTCCTGATGGCGGTGGATCATCCCCGTTTTCTGTTCTTCTTTCGTTGTTGCCCCCTTATTCTTTTTGTTAAGCTGGGCCATCATGTATCTGGCAAATGTATATTTGAGCCTGTAGGGTACAAAGAAACTGAGTGGTATAAAGGATGATGTACTGCCTTCTCAACTATGAAAAAAAAAACTTGNACCAAACTG]




>consensus_9645#0
TCGCTGTGATCTGCTCCTCGCACATCATCGTTGCTAATTGTGGAGACTCACGGGCAGTGC
TCTGTCGTGGCAAGCAGCCTGTGCCGCTATCAGTGGATCATAAACCTAACAGGGAGGATG
AATATGCAAGGATCGAGGCTTATATGTGGCAAGGTTATACAGTGGAATGGCTATCGAGTT
TTTGGTGTTCTTGCCATGTCGCGATCAATAGGTGACAGATATCTCAAGCCATGGATAATT
CCAGTCCCCGAGATCACTATTGTTCCTCGAGCAAAGGATGACGAATGTCTCGTTCTTGCT
AGTGATGGTCTCTGGGACGTCATGTCAAACGAAGAGGTATGCGATGTTGCTCGCAAGCGA
ATATGCTGTGGCACAAGAAGAATGGCACAAACCCAGCATCAGCCCCGCGAAGCGGTGACT
CGTCAGATCCGGCAGCTGAAGCAGCTGCTGAGTGCTTGTCGAAGCTTGCTCTCCAGAAGG
GGAGCAAGGACAACATTAGCGTCATTGTCGTTGACCTCAAGGCACATAGGAAGTTCAAGA
GCAAAAGCTAACATCTTCTTGATGAACAGCAACAGTGACAGAATTTCTAGGGATCTACAG
AGATTTGGAGAATCCAAATTCGATCGATTTAGAGGACTCCTTTTTAGTACATTACTTAGC
CCAGTTCTCCCTCTTATTTTCTTTTACCATTTGACCCTCCCAAGGGCTGTATTCATGTAT
ACGGTACAGATTGCAAAATCCGCACCGGGGTCTATGTTTCCTGATGGCGGTGGATCATCC
CCGTTTTCTGTTCTTCTTTCGTTGTTGCCCCCTTATTCTTTTTGTTAAGCTGGGCCATCA
TGTATCTGGCAAATGTATATTTGAGCCTGTAGGGTACAAAGAAACTGAGTGGTATAAAGG
ATGATGTACTGCCTTCTCAACTATGAAAAAAAAAACTTGNACCAAACTG

consensusID : consensus_9645#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 543
fasta sequence

                              [GTGCTTGTCGAAGCTTGCTCTCCAGAAGGGGACCAAGGACAACATTAGCGTCAGTTGTCGTTGGACACTCAAGGCACATAGGAAGTTCAAGAGCAAAAAGCTAACAATCGTTCTTGATGAACAGCACAACAGTGACAGAATTTCTAGGGATCTACAGAGATTTGGAGAATCCAAATTTCGGATGCGGATTTNAGGAGGACTCCTNTTGTTGAGGTAACATGTAACTTGAGCCCCAAGTTGCTGCCCTGCTTGATTTTGCTGTGTTGACACATGTTGACCACTCCCACAAAGGGCCTGGTGATTGCATGGTGATGACCGGGTACAAGGATTGGCAAAAATGCCGCACCGGGGGTGCTGATGGTTTGCCTGATGGGCAGGTGGGATGCATGCCCCGTTTTGCTGGTTGCTTGCTTTCGTGTGTGCCCCCCNGTATTCTTTTTTTAACTGGCCCATCATGTATCTGCCAAATGTATATTTGACCCTGTAGGGTACAAGAAACTGAGTGGTATAAAGGATGATGTCCNCCCTTCTCAACTAAAAAAA]

[+] EMBL BM038623             [GTGCTTGTCGAAGCTTGCTCTCCAGAAGGGGACCAAGGACAACATTAGCGTCAGTTGTCGTTGGACACTCAAGGCACATAGGAAGTTCAAGAGCAAAAAGCTAACAATCGTTCTTGATGAACAGCACAACAGTGACAGAATTTCTAGGGATCTACAGAGATTTGGAGAATCCAAATTTCGGATGCGGATTTNAGGAGGACTCCTNTTGTTGAGGTAACATGTAACTTGAGCCCCAAGTTGCTGCCCTGCTTGATTTTGCTGTGTTGACACATGTTGACCACTCCCACAAAGGGCCTGGTGATTGCATGGTGATGACCGGGTACAAGGATTGGCAAAAATGCCGCACCGGGGGTGCTGATGGTTTGCCTGATGGGCAGGTGGGATGCATGCCCCGTTTTGCTGGTTGCTTGCTTTCGTGTGTGCCCCCCNGTATTCTTTTTTTAACTGGCCCATCATGTATCTGCCAAATGTATATTTGACCCTGTAGGGTACAAGAAACTGAGTGGTATAAAGGATGATGTCCNCCCTTCTCAACTAAAAAAA]




>consensus_9645#1
GTGCTTGTCGAAGCTTGCTCTCCAGAAGGGGACCAAGGACAACATTAGCGTCAGTTGTCG
TTGGACACTCAAGGCACATAGGAAGTTCAAGAGCAAAAAGCTAACAATCGTTCTTGATGA
ACAGCACAACAGTGACAGAATTTCTAGGGATCTACAGAGATTTGGAGAATCCAAATTTCG
GATGCGGATTTNAGGAGGACTCCTNTTGTTGAGGTAACATGTAACTTGAGCCCCAAGTTG
CTGCCCTGCTTGATTTTGCTGTGTTGACACATGTTGACCACTCCCACAAAGGGCCTGGTG
ATTGCATGGTGATGACCGGGTACAAGGATTGGCAAAAATGCCGCACCGGGGGTGCTGATG
GTTTGCCTGATGGGCAGGTGGGATGCATGCCCCGTTTTGCTGGTTGCTTGCTTTCGTGTG
TGCCCCCCNGTATTCTTTTTTTAACTGGCCCATCATGTATCTGCCAAATGTATATTTGAC
CCTGTAGGGTACAAGAAACTGAGTGGTATAAAGGATGATGTCCNCCCTTCTCAACTAAAA
AAA

consensusID : consensus_9645#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 401
fasta sequence

                              [AACAGCAACAGTGACAGAATTTCTAGGGATCTACAGAGATTTGGAGAATCCAAATTCGATCGATTTAGAGGACTCCTTTTTAGTACATTACTTAGCCCAGTTCTCCCTCTTATTTTCTTTTACCATTTGACCCTCCCAAGGGCTGTATTCATGTATACGGTACAGATTGCAAAATCCGCACCGGGGTCTATGTTTCCTGATGGCGGTGGATCATCCCCGTTTTCTGTTCTTCTTTCGTTGTTGCCCCCTTATTCTTTTTGTTAAGCTGGGCCATCATGTATCTGGCAAATGTATATTTGAGCCTGTAAGGTACAAAGAAACTGAGTGGTATAAAGGATGATGTACTGCCTTNTCAACTATGAACTGGGGTCCGGATTAACTTCTGTTTCCAAAAAAAAAAA]

[+] EMBL AU174683             [AACAGCAACAGTGACAGAATTTCTAGGGATCTACAGAGATTTGGAGAATCCAAATTCGATCGATTTAGAGGACTCCTTTTTAGTACATTACTTAGCCCAGTTCTCCCTCTTATTTTCTTTTACCATTTGACCCTCCCAAGGGCTGTATTCATGTATACGGTACAGATTGCAAAATCCGCACCGGGGTCTATGTTTCCTGATGGCGGTGGATCATCCCCGTTTTCTGTTCTTCTTTCGTTGTTGCCCCCTTATTCTTTTTGTTAAGCTGGGCCATCATGTATCTGGCAAATGTATATTTGAGCCTGTAAGGTACAAAGAAACTGAGTGGTATAAAGGATGATGTACTGCCTTNTCAACTATGAACTGGGGTCCGGATTAACTTCTGTTTCCAAAAAAAAAAA]




>consensus_9645#2
AACAGCAACAGTGACAGAATTTCTAGGGATCTACAGAGATTTGGAGAATCCAAATTCGAT
CGATTTAGAGGACTCCTTTTTAGTACATTACTTAGCCCAGTTCTCCCTCTTATTTTCTTT
TACCATTTGACCCTCCCAAGGGCTGTATTCATGTATACGGTACAGATTGCAAAATCCGCA
CCGGGGTCTATGTTTCCTGATGGCGGTGGATCATCCCCGTTTTCTGTTCTTCTTTCGTTG
TTGCCCCCTTATTCTTTTTGTTAAGCTGGGCCATCATGTATCTGGCAAATGTATATTTGA
GCCTGTAAGGTACAAAGAAACTGAGTGGTATAAAGGATGATGTACTGCCTTNTCAACTAT
GAACTGGGGTCCGGATTAACTTCTGTTTCCAAAAAAAAAAA

consensusID : consensus_9645#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 200
fasta sequence

                              [GTTCTTCTTTCGTTGTTGCCCCCTTATTCTTTTTGTTAAGCTGGGCCATCATGTATCTGGCAAATGTATATTTGAGCCTGTAGGGTACAAAGAAACTGAGTGGTATAAAGGATGATGTACTGCCTTCTCAACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCNNGA]

[+] EMBL CA757691             [GTTCTTCTTTCGTTGTTGCCCCCTTATTCTTTTTGTTAAGCTGGGCCATCATGTATCTGGCAAATGTATATTTGAGCCTGTAGGGTACAAAGAAACTGAGTGGTATAAAGGATGATGTACTGCCTTCTCAACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCNNGA]




>consensus_9645#3
GTTCTTCTTTCGTTGTTGCCCCCTTATTCTTTTTGTTAAGCTGGGCCATCATGTATCTGG
CAAATGTATATTTGAGCCTGTAGGGTACAAAGAAACTGAGTGGTATAAAGGATGATGTAC
TGCCTTCTCAACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAACTCNNGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9645#1      ------------------------------------------------------------
consensus_9645#2      ------------------------------------------------------------
consensus_9645#0      TCGCTGTGATCTGCTCCTCGCACATCATCGTTGCTAATTGTGGAGACTCACGGGCAGTGC 60
consensus_9645#3      ------------------------------------------------------------
                                                                                  

consensus_9645#1      ------------------------------------------------------------
consensus_9645#2      ------------------------------------------------------------
consensus_9645#0      TCTGTCGTGGCAAGCAGCCTGTGCCGCTATCAGTGGATCATAAACCTAACAGGGAGGATG 120
consensus_9645#3      ------------------------------------------------------------
                                                                                  

consensus_9645#1      ------------------------------------------------------------
consensus_9645#2      ------------------------------------------------------------
consensus_9645#0      AATATGCAAGGATCGAGGCTTATATGTGGCAAGGTTATACAGTGGAATGGCTATCGAGTT 180
consensus_9645#3      ------------------------------------------------------------
                                                                                  

consensus_9645#1      ------------------------------------------------------------
consensus_9645#2      ------------------------------------------------------------
consensus_9645#0      TTTGGTGTTCTTGCCATGTCGCGATCAATAGGTGACAGATATCTCAAGCCATGGATAATT 240
consensus_9645#3      ------------------------------------------------------------
                                                                                  

consensus_9645#1      ------------------------------------------------------------
consensus_9645#2      ------------------------------------------------------------
consensus_9645#0      CCAGTCCCCGAGATCACTATTGTTCCTCGAGCAAAGGATGACGAATGTCTCGTTCTTGCT 300
consensus_9645#3      ------------------------------------------------------------
                                                                                  

consensus_9645#1      ------------------------------------------------------------
consensus_9645#2      ------------------------------------------------------------
consensus_9645#0      AGTGATGGTCTCTGGGACGTCATGTCAAACGAAGAGGTATGCGATGTTGCTCGCAAGCGA 360
consensus_9645#3      ------------------------------------------------------------
                                                                                  

consensus_9645#1      ------------------------------------------------------------
consensus_9645#2      ------------------------------------------------------------
consensus_9645#0      ATATGCTGTGGCACAAGAAGAATGGCACAAACCCAGCATCAGCCCCGCGAAGCGGTGACT 420
consensus_9645#3      ------------------------------------------------------------
                                                                                  

consensus_9645#1      -------------------------------GTGCTTGTCGAAGCTTGCTCTCCAGAAGG 29
consensus_9645#2      ------------------------------------------------------------
consensus_9645#0      CGTCAGATCCGGCAGCTGAAGCAGCTGCTGAGTGCTTGTCGAAGCTTGCTCTCCAGAAGG 480
consensus_9645#3      ------------------------------------------------------------
                                                                                  

consensus_9645#1      GGACCAAGGACAACATTAGCGTCAGTTGTCGTTGGACACTCAAGGCACATAGGAAGTTCA 89
consensus_9645#2      ------------------------------------------------------------
consensus_9645#0      GGAGCAAGGACAACATTAGCGTCA-TTGTCGTTGAC--CTCAAGGCACATAGGAAGTTCA 537
consensus_9645#3      ------------------------------------------------------------
                                                                                  

consensus_9645#1      AGAGCAAAAAGCTAACAATCGTTCTTGATGAACAGCACAACAGTGACAGAATTTCTAGGG 149
consensus_9645#2      ------------------------------AACAGCA--ACAGTGACAGAATTTCTAGGG 28
consensus_9645#0      AGAGCAAAA-GCTAACATC--TTCTTGATGAACAGCA--ACAGTGACAGAATTTCTAGGG 592
consensus_9645#3      ------------------------------------------------------------
                                                                                  

consensus_9645#1      ATCTACAGAGATTTGGAGAATCCAAATTTCGGATGCGGATTTNAGGAGGACTCCTNTTGT 209
consensus_9645#2      ATCTACAGAGATTTGGAGAATCCAAATTC--GAT--CGATTTA--GAGGACTCCTTTT-- 80
consensus_9645#0      ATCTACAGAGATTTGGAGAATCCAAATTC--GAT--CGATTTA--GAGGACTCCTTTT-- 644
consensus_9645#3      ------------------------------------------------------------
                                                                                  

consensus_9645#1      TGAGGTAACATGTAACTTGAGCCCCAAGTTGCTGCCCTGCTTGATTTTGCTGTGTTGACA 269
consensus_9645#2      -----TAGTACATTACTTAG--CCCAGTTCTCCCTCTTATTTTCTTTTACCAT------- 126
consensus_9645#0      -----TAGTACATTACTTAG--CCCAGTTCTCCCTCTTATTTTCTTTTACCAT------- 690
consensus_9645#3      ------------------------------------------------------------
                                                                                  

consensus_9645#1      CATGTTGACCACTCCCACAAAGGGCCTGGTGATTGCATGGTGATGACCGGGTACAAGGAT 329
consensus_9645#2      ----TTGACC-CTCCC---AAGGGCTGTATTCATGTATAC---------GGTACA--GAT 167
consensus_9645#0      ----TTGACC-CTCCC---AAGGGCTGTATTCATGTATAC---------GGTACA--GAT 731
consensus_9645#3      ------------------------------------------------------------
                                                                                  

consensus_9645#1      TGGCAAAAATGCCGCACCGGGGGTGCTGATGGTTTGCCTGATGGGCAGGTGGGATGCATG 389
consensus_9645#2      TGC--AAAAT-CCGCACCGGGGTCTATG-----TTTCCTGATGG--CGGTGGATCAT--- 214
consensus_9645#0      TGC--AAAAT-CCGCACCGGGGTCTATG-----TTTCCTGATGG--CGGTGGATCAT--- 778
consensus_9645#3      ------------------------------------------------------------
                                                                                  

consensus_9645#1      CCCCGTTTTGCTGGTTGCTTGCTTTCGTGTGTGCCCCCCNGTATTCTTTTTTTAACTGGC 449
consensus_9645#2      CCCCGTTTT-CTGTT---CTTCTTTCGTTGTTGCCCCCTTATTCTTTTTGTTAAGCTGGG 270
consensus_9645#0      CCCCGTTTT-CTGTT---CTTCTTTCGTTGTTGCCCCCTTATTCTTTTTGTTAAGCTGGG 834
consensus_9645#3      ------------GTT---CTTCTTTCGTTGTTGCCCCCTTATTCTTTTTGTTAAGCTGGG 45
                                  * *    * *******   *******   *  * *** ** * **** 

consensus_9645#1      CCATCATGTATCTGCCAAATGTATATTTGACCCTGTAGGGTACAA-GAAACTGAGTGGTA 508
consensus_9645#2      CCATCATGTATCTGGCAAATGTATATTTGAGCCTGTAAGGTACAAAGAAACTGAGTGGTA 330
consensus_9645#0      CCATCATGTATCTGGCAAATGTATATTTGAGCCTGTAGGGTACAAAGAAACTGAGTGGTA 894
consensus_9645#3      CCATCATGTATCTGGCAAATGTATATTTGAGCCTGTAGGGTACAAAGAAACTGAGTGGTA 105
                      ************** *************** ****** ******* **************

consensus_9645#1      TAAAGGATGATGTCCNCCCTTCTCAACTAAAAAAA------------------------- 543
consensus_9645#2      TAAAGGATGATGTACTGCCTTNTCAACTATGAACTGGGGTCCGGATTAACTTCTGTTTCC 390
consensus_9645#0      TAAAGGATGATGTACTGCCTTCTCAACTATGAAAAAAAAAACTTGNACCAAACTG----- 949
consensus_9645#3      TAAAGGATGATGTACTGCCTTCTCAACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 165
                      ************* *  **** *******  **                           

consensus_9645#1      -----------------------------------
consensus_9645#2      AAAAAAAAAAA------------------------ 401
consensus_9645#0      -----------------------------------
consensus_9645#3      AAAAAAAAAAAAAAAAAAAAAAAAAAAACTCNNGA 200