These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9646#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 3454 fasta sequence [GAGAATCAAGTGAGTTAGGCTGATCTCGCCACCGATTCCCCTCCGATTAACCCACCTAGAAGTCGCTTAGAGGCGAGGCGAGGCGACTAGGCTGGCTCTGCCTCCTTCTGCTGGCGGCAGCTCCCAGCAGGTTGCCACCTCCACCGTGCGTCGCTCCTTTCCCGGCGTCTCCTCCCGTGGCGCGGAGCACGAATCAAGCAGTTGAGAGTGGAACAGAGATGGCAGGAGCATTTGTTAGTGCTTCAGTAGGGGTGCTGAATCCTCTTCTAACCAAGCTTTCCGCCTTGGTCGAGGGAGAGTACAAGCTGCTCAAAAGTGTGAAGAAGGATATCATCTTTTTGAGGAATGAGCTCAGCAGCATCAGTGTCTTGCTTGAGCATCTGTCGACCAAGGAGGACAAGCTTGATGGGCCGACCAAGGAGTGGAGGAACAACATGCTCGAGCTAGCTTATGATATTGAGGATTGCATCGACCTCTTCATCCACAAGTTGAGTTGTGGCGATGCGAATGCCAACTTTGTTCAGAAGATAGGAAGCAAGATAAAGAAGTTATGGGGCAAACACCAGATCACAGAGTGTATCCAAGAACTGAAGAATCGGGTTATGGAGGAGGATCAACGTCGCAAGAGGAATCAGATCGATGATTTCATCTCCGAGCCAAGTGTGGTGGAAATTGATCCCCGTCTACCGGCATTGTATGAGGAGGTGGAGAGGCTCGTGGGGATTGATGGTCCAAGGGAGAAGATCATTAAGTGGATCATGACCAAAGGCAAGCCATTAGAGCAACGTAAAGTGGTTTCTATTGTTGGTTTGGGTGGTCTTGGAAAGACAACTCTAGCTAATGAAGTGTACAAGACAATACAAGGGGATTTTAAGTGTATAACTTTTGTGTCTATTTCACGTACCCCTAATATAAGGAAGATCTTGGTTGATATGCTTAAAGGGCTCGGGAGCAATGGAGATGTATCGGAAGATGAGCAGAACCTCATCAGTCATCTTCGAGGATTCTTGAAAGATAAAAGGTACCTCATTGTTTTTGATGACATTTGGGACATAGGTGCGTGGAAGGTGGTCAATTGTGCTTTCCCAGAGAATAATTTGGGCAGTATAATCATAACAACAACAAGAAACACTGCCGTAGCTGAAGCATGCAGCCGTACCACATCTGAAGGCTATCTTCACAGCATGCAGCCACTAGAAGAGCAAGATTCACAGAGATTATTTTACCGGAGAGCTTTTAATTCTGAGAGTTGCTGCCCGCCTCACCTGGAAGACATCTCTCATGCCATCATATCGAAATGTCGTAGTTTACCATTAGCTATAATCTCCATAGCTAGCTTGCTATCAATCAAACCTGATACAGAGGACCAGTGGATGCAAGTGCACAATTCTATTGGTGTTACACTAAACTCAGACGTCGAAGTGAGAAAAATTTTGATGCTCAGTTATTATGATCTTCCTTATCCCCTGAAAAATTGTCTGTTGTATCTCAGCATGTATCCAGAGGATTATGTAATTGATAGACAAGAACTTATATGGAGATGGATAGCTGAAGGATTCATCATTGAAGCGAAGGGAAAAACACGGGAGCAAGTAGGAGAGAACTACTTCAATGAGCTTATAAATAGAAGCTTGATCCAACCAGTTTATATCCAATATGATGGTAGGGCCAGTTGCTGCCGAGTCCACGATATTGTGCTTGATCTTATCATTAGCCTATCAACTGGACAGAATTTCGTCACAATAGTGCATGAACAACAGCATTGGAGTTCTTTCAAGAAGATTCGGAGGACCTGGTTCCCATCCAATGGCACAGATAATAGAATAGTCAAGGAGATTACGAACAACTGCTCACATGTTCGTTCGCTGTTCTTTGACAGTCCTAAACCGGAGCAAATACCACAATTTAAGAAATGCCATGCTCTGCGGGTATTGGTTCTGGATGGGTGCATGAGCCTGGAGAGCCAGCATATTAACAGCCTAACATACCTTTTCCAGTTGAAGTATCTGAAGCTCAATGTTGCAAATGTTACCGAGATGCCCAAGGATATTGGACGGCTGCAGCAACTAGAAACACTAATTATTCGTGGAGGAGGACATGTCAACGAAATAAACATTCCGTCAAGTGTTTGTAGACTGCAAAAACTAGAGCGCCTAATTGTTGATTACCCAATGAGATTGCCAGATGAAATTGGATTTTTGCAAGCTTTGGAGATGCTATCTCTTTTTTACAACATAGAGTACAGCATAAAATGTTTACAAGAGCTCCGTCGGCTGACCAGACTAAGGTATCTGCGCATAAGGACGCCTTTTGGAGGTGATGTAGCAAGGTTCGAGAGGTACAAGGACGCCTTTTACATGACTCTCGATGAGTTAGGTAAAAATAGCCTTCAATCATTACATGTACATGTTACAACCAAGTTTTCAGATACATTGATGGATTCATGTTGTAGTAGTGCTCCCGGTCTCAGAGAGCTTTCTACTTCTGGCGTTGGAATATCAAAACTTTCGGAGCAGATGATTTCCCTTTCTAATCTTGCCTATCTTGTGATCTTCTATAATACTAGAAGCAATGATCAGAAAGATATCAACCTCCTTGGGTGTATACCCAAGCTTCTCTATCTTAAAGTAATATTCGCCCAAGGCTGGGAGGATGGACTCACTGTAGGCTGTGGTGGATTTCCCTGTCTAAAGGAGTTGATGTTCAGGCATAGTCGCCTGCATTGGTTGTTGTTTGAACCTGGCGCTATGCCAAAACTCCAAAGGCTTTCTATTGAGTTGTTTGCACAAAAAGCAGCATCCAAACTTGGGTTTGAGCAGAGCTTTGTGCACCTTTCCAGCCTCCAGCATCTAATCGTCGTTCTCGATTGTTCTGATGCCCACTACAAGGGACGTGAAAGCTTTGGAAGATGCCATTAGGAACGTGGCCAGCATCCAGACTCGCTGTCTTACTCTCGAAATTCTAAGGCGCTATGAAGATGAAATGGTAAAGGAAGATGAAGAGGAGCAGCTAAAAGGCAGTACAG-AGGGAGGTGGAACTGAAGAGCATCATATTCAGCAGCCACTGATCATAGTCGGAAACCAGAAGCGCTGGAAGCCAGTGCTATTCGGGAATTCAGACAAAGTGCAAGCTAGCTAAACATTTAATATATGGTCCTG-TTGAGTTAGCGCCGTACCCATTTCTGCTCTGCGTTTCTTCATGGTACATGATGTC--TGTGTCTGGGGATCGTGTGCGTTTGTACCATGGGCTCTTACGCATGCTTGTTCATGTGCGAGCGCGTCGGAGTTAGTAGGCGTCATGTGGACATGTGCTTTCTGCCTTGGGATTGCGCGGCTCAGTCGGGAAGCGCATGATGGAGTCGTAGGGCGCATGGCGAGGAGAGCGCTCGATCGTGGGATGGCACGATCGCCGAGCTATTTAAGTTAATAAATGCATCAGAAAATGCTACAAGCTT] [+] EMBL AK070311 [GAGAATCAAGTGAGTTAGGCTGATCTCGCCACCGATTCCCCTCCGATTAACCCACCTAGAAGTCGCTTAGAGGCGAGGCGAGGCGACTAGGCTGGCTCTGCCTCCTTCTGCTGGCGGCAGCTCCCAGCAGGTTGCCACCTCCACCGTGCGTCGCTCCTTTCCCGGCGTCTCCTCCCGTGGCGCGGAGCACGAATCAAGCAGTTGAGAGTGGAACAGAGATGGCAGGAGCATTTGTTAGTGCTTCAGTAGGGGTGCTGAATCCTCTTCTAACCAAGCTTTCCGCCTTGGTCGAGGGAGAGTACAAGCTGCTCAAAAGTGTGAAGAAGGATATCATCTTTTTGAGGAATGAGCTCAGCAGCATCAGTGTCTTGCTTGAGCATCTGTCGACCAAGGAGGACAAGCTTGATGGGCCGACCAAGGAGTGGAGGAACAACATGCTCGAGCTAGCTTATGATATTGAGGATTGCATCGACCTCTTCATCCACAAGTTGAGTTGTGGCGATGCGAATGCCAACTTTGTTCAGAAGATAGGAAGCAAGATAAAGAAGTTATGGGGCAAACACCAGATCACAGAGTGTATCCAAGAACTGAAGAATCGGGTTATGGAGGAGGATCAACGTCGCAAGAGGAATCAGATCGATGATTTCATCTCCGAGCCAAGTGTGGTGGAAATTGATCCCCGTCTACCGGCATTGTATGAGGAGGTGGAGAGGCTCGTGGGGATTGATGGTCCAAGGGAGAAGATCATTAAGTGGATCATGACCAAAGGCAAGCCATTAGAGCAACGTAAAGTGGTTTCTATTGTTGGTTTGGGTGGTCTTGGAAAGACAACTCTAGCTAATGAAGTGTACAAGACAATACAAGGGGATTTTAAGTGTATAACTTTTGTGTCTATTTCACGTACCCCTAATATAAGGAAGATCTTGGTTGATATGCTTAAAGGGCTCGGGAGCAATGGAGATGTATCGGAAGATGAGCAGAACCTCATCAGTCATCTTCGAGGATTCTTGAAAGATAAAAGGTACCTCATTGTTTTTGATGACATTTGGGACATAGGTGCGTGGAAGGTGGTCAATTGTGCTTTCCCAGAGAATAATTTGGGCAGTATAATCATAACAACAACAAGAAACACTGCCGTAGCTGAAGCATGCAGCCGTACCACATCTGAAGGCTATCTTCACAGCATGCAGCCACTAGAAGAGCAAGATTCACAGAGATTATTTTACCGGAGAGCTTTTAATTCTGAGAGTTGCTGCCCGCCTCACCTGGAAGACATCTCTCATGCCATCATATCGAAATGTCGTAGTTTACCATTAGCTATAATCTCCATAGCTAGCTTGCTATCAATCAAACCTGATACAGAGGACCAGTGGATGCAAGTGCACAATTCTATTGGTGTTACACTAAACTCAGACGTCGAAGTGAGAAAAATTTTGATGCTCAGTTATTATGATCTTCCTTATCCCCTGAAAAATTGTCTGTTGTATCTCAGCATGTATCCAGAGGATTATGTAATTGATAGACAAGAACTTATATGGAGATGGATAGCTGAAGGATTCATCATTGAAGCGAAGGGAAAAACACGGGAGCAAGTAGGAGAGAACTACTTCAATGAGCTTATAAATAGAAGCTTGATCCAACCAGTTTATATCCAATATGATGGTAGGGCCAGTTGCTGCCGAGTCCACGATATTGTGCTTGATCTTATCATTAGCCTATCAACTGGACAGAATTTCGTCACAATAGTGCATGAACAACAGCATTGGAGTTCTTTCAAGAAGATTCGGAGGACCTGGTTCCCATCCAATGGCACAGATAATAGAATAGTCAAGGAGATTACGAACAACTGCTCACATGTTCGTTCGCTGTTCTTTGACAGTCCTAAACCGGAGCAAATACCACAATTTAAGAAATGCCATGCTCTGCGGGTATTGGTTCTGGATGGGTGCATGAGCCTGGAGAGCCAGCATATTAACAGCCTAACATACCTTTTCCAGTTGAAGTATCTGAAGCTCAATGTTGCAAATGTTACCGAGATGCCCAAGGATATTGGACGGCTGCAGCAACTAGAAACACTAATTATTCGTGGAGGAGGACATGTCAACGAAATAAACATTCCGTCAAGTGTTTGTAGACTGCAAAAACTAGAGCGCCTAATTGTTGATTACCCAATGAGATTGCCAGATGAAATTGGATTTTTGCAAGCTTTGGAGATGCTATCTCTTTTTTACAACATAGAGTACAGCATAAAATGTTTACAAGAGCTCCGTCGGCTGACCAGACTAAGGTATCTGCGCATAAGGACGCCTTTTGGAGGTGATGTAGCAAGGTTCGAGAGGTACAAGGACGCCTTTTACATGACTCTCGATGAGTTAGGTAAAAATAGCCTTCAATCATTACATGTACATGTTACAACCAAGTTTTCAGATACATTGATGGATTCATGTTGTAGTAGTGCTCCCGGTCTCAGAGAGCTTTCTACTTCTGGCGTTGGAATATCAAAACTTTCGGAGCAGATGATTTCCCTTTCTAATCTTGCCTATCTTGTGATCTTCTATAATACTAGAAGCAATGATCAGAAAGATATCAACCTCCTTGGGTGTATACCCAAGCTTCTCTATCTTAAAGTAATATTCGCCCAAGGCTGGGAGGATGGACTCACTGTAGGCTGTGGTGGATTTCCCTGTCTAAAGGAGTTGATGTTCAGGCATAGTCGCCTGCATTGGTTGTTGTTTGAACCTGGCGCTATGCCAAAACTCCAAAGGCTTTCTATTGAGTTGTTTGCACAAAAAGCAGCATCCAAACTTGGGTTTGAGCAGAGCTTTGTGCACCTTTCCAGCCTCCAGCATCTAATCGTCGTTCTCGATTGTTCTGATGCCCACTACAAGGGACGTGAAAGCTTTGGAAGATGCCATTAGGAACGTGGCCAGCATCCAGACTCGCTGTCTTACTCTCGAAATTCTAAGGCGCTATGAAGATGAAATGGTAAAGGAAGATGAAGAGGAGCAGCTAAAAGGCAGTACAG AGGGAGGTGGAACTGAAGAGCATCATATTCAGCAGCCACTGATCATAGTCGGAAACCAGAAGCGCTGGAAGCCAGTGCTATTCGGGAATTCAGACAAAGTGCAAGCTAGCTAAACATTTAATATATGGTCCTG TTGAGTTAGCGCCGTACCCATTTCTGCTCTGCGTTTCTTCATGGTACATGATGTC TGTGTCTGGGGATCGTGTGCGTTTGTACCATGGGCTCTTACGCATGCTTGTTCATGTGCGAGCGCGTCGGAGTTAGTAGGCGTCATGTGGACATGTGCTTTCTGCCTTGGGATTGCGCGGCTCAGTCGGGAAGCGCATGATGGAGTCGTAGGGCGCATGGCGAGGAGAGCGCTCGATCGTGGGATGGCACGATCGCCGAGCTATTTAAGTTAATAAATGCATC ] [+] EMBL AK103036 [ TATTGAGGATTGCATCGACCTCTTCATCCACAAGTTGAGTTGTGGCGATGCGAATGCCAACTTTGTTCAGAAGATAGGAAGCAAGATAAAGAAGTTATGGGGCAAACACCAGATCACAGAGTGTATCCAAGAACTGAAGAATCGGGTTATGGAGGAGGATCAACGTCGCAAGAGGAATCAGATCGATGATTTCATCTCCGAGCCAAGTGTGGTGGAAATTGATCCCCGTCTACCGGCATTGTATGAGGAGGTGGAGAGGCTCGTGGGGATTGATGGTCCAAGGGAGAAGATCATTAAGTGGATCATGACCAAAGGCAAGCCATTAGAGCAACGTAAAGTGGTTTCTATTGTTGGTTTGGGTGGTCTTGGAAAGACAACTCTAGCTAATGAAGTGTACAAGACAATACAAGGGGATTTTAAGTGTATAACTTTTGTGTCTATTTCACGTACCCCTAATATAAGGAAGATCTTGGTTGATATGCTTAAAGGACTCGGGAGCAATGGAGATGTATCGGAAGATGAGCAGAACCTCATCAGTCATCTTCGAGGATTCTTGAAAGATAAAAGGTACCTCATTGTTTTTGATGACATTTGGGACATAGGTGCGTGGAAGGTGGTCAATTGTGCTTTCCCAGAGAATAATTTGGGCAGTATAATCATAACAACAACAAGAAACACTGCCGTAGCTGAAGCATGCAGCCGTACCACATCTGAAGGCTATCTTCACAGCATGCAGCCACTAGAAGAGCAAGATTCACAGAGATTATTTTACCGGAGAGCTTTTAATTCTGAGAGTTGCTGCCCGCCTCACCTGGAAGACATCTCTCATGCCATCATATCGAAATGTCGTAGTTTACCATTAGCTATAATCTCCATAGCTAGCTTGCTATCAATCAAACCTGATACAGAGGACCAGTGGATGCAAGTGCACAATTCTATTGGTGTTACACTAAACTCAGACGTCGAAGTGAGAAAAATTTTGATGCTCAGTTATTATGATCTTCCTTATCCCCTGAAAAATTGTCTGTTGTATCTCAGCATGTATCCAGAGGATTATGTAATTGATAGACAAGAACTTATATGGAGATGGATAGCTGAAGGATTCATCATTGAAGCGAAGGGAAAAACACGGGAGCAAGTAGGAGAGAACTACTTCAATGAGCTTATAAATAGAAGCTTGATCCAACCAGTTTATATCCAATATGATGGTAGGGCCAGTTGCTGCCGAGTCCACGATATTGTGCTTGATCTTATCATTAGCCTATCAACTGGACAGAATTTCGTCACAATAGTGCATGAACAACAGCATTGGAGTTCTTTCAAGAAGATTCGGAGGACCTGGTTCCCATCCAATGGCACAGATAATAGAATAGTCAAGGAGATTACGAACAACTGCTCACATGTTCGTTCGCTGTTCTTTGACAGTCCTAAACCGGAGCAAATACCACAATTTAAGAAATGCCATGCTCTGCGGGTATTGGTTCTGGATGGGTGCATGAGCCTGGAGAGCCAGCATATTAACAGCCTAACATACCTTTTCCAGTTGAAGTATCTGAAGCTCAATGTTGCAAATGTTACCGAGATGCCCAAGGATATTGGACGGCTGCAGCAACTAGAAACACTAATTATTCGTGGAGGAGGACATGTCAACGAAATAAACATTCCGTCAAGTGTTTGTAGACTGCAAAAACTAGAGCGCCTAATTGTTGATTACCCAATGAGATTGCCAGATGAAATTGGATTTTTGCAAGCTTTGGAGATGCTATCTCTTTTTTACAACATAGAGTACAGCATAAAATGTTTACAAGAGCTCCGTCGGCTGACCAGACTAAGGTATCTGCGCATAAGGACGCCTTTTGGAGGTGATGTAGCAAGGTTCGAGAGGTACAAGGACGCCTTTTACATGACTCTCGATGAGTTAGGTAAAAATAGCCTTCAATCATTACATGTACATGTTACAACCAAGTTTTCAGATACATTGATGGATTCATGTTGTAGTAGTGCTCCCGGTCTCAGAGAGCTTTCTACTTCTGGCGTTGGAATATCAAAACTTTCGGAGCAGATGATTTCCCTTTCTAATCTTGCCTATCTTGTGATCTTCTATAATACTAGAAGCAATGATCAGAAAGATATCAACCTCCTTGGGTGTATACCCAAGCTTCTCTATCTTAAAGTAATATTCGCCCAAGGCTGGGAGGATGGACTCACTGTAGGCTGTGGTGGATTTCCCTGTCTAAAGGAGTTGATGTTCAGGCATAGTCGCCTGCATTGGTTGTTGTTTGAACCTGGCGCTATGCCAAAACTCCAAAGGCTTTCTATTGAGTTGTTTGCACAAAAAGCAGCATCCAAACTTGGGTTTGAGCAGAGCTTTGTGCACCTTTCCAGCCTCCAGCATCTAATCGTCGTTCTCGATTGTTCTGATGCCCACTACAAGGGACGTGAAAGCTTTGGAAGATGCCATTAGGAACGTGGCCAGCATCCAGACTCGCTGTCTTACTCTCGAAATTCTAAGGCGCTATGAAGATGAAATGGTAAAGGAAGATGAAGAGGAGCAGCTAAAAGGCAGTACAG AGGGAGGTGGAACTGAAGAGCATCATATTCAGCAGCCACTGATCATAGTCGGAAACCAGAAGCGCTGGAAGCCAGTGCTATTCGGGAATTCAGACAAAGTGCAAGCTAGCTAAACATTTAATATATGGTCCTG TTGAG ] [+] EMBL CF303753 [ AAAGATATCAACCTCCTTGGGTGTATACCCAAGCTTCTCTATCTTAAAGTAATATTCGCCCAAGGCTGGGAGGATGGACTCACTGTAGGCTGTGGTGGATTTCCCTGTCTAAAGGAGTTGATGTTCAGGCATAGTCGCCTGCATTGGTTGTTGTTTGAACCTGGCGCTATGCCAAAACTCCAAAGGCTTTCTATTGAGTTGTTTGCACAAAAAGCAGCATCCAAACTTGGGTTTGAGCAGAGCTTTGTGCACCTTTCCAGCCTCCAGCATCTAATCGTCGTTCTCGATTGTTCTGATGCCCACTACAAGGGACGTGAAAGCTTTGGAAGATGCCATTAGGAACGTGGCCAGCATCCAGACTCGCTGTCTTACTCTCGAAATTCTAAGGCGCTATGAAGATGAAATGGTAAAGGAAGATGAAGAGGAGCAGCTAAAAGGCAGTACAGAAGGGAGGTGGAACTGAAGAGCATCATATTCAGCAGCCACTGATCATAGTCGGAAACCAGAAGCGCTGGAAGCCAGTGCTATTCGGGAATTCAGACAAAGTGCAAGCTAGCTAAACATTTAATATATGGTCCTGNTTGAGTTAGCGCCGTACCCATTTCTGCTCTGCGTTTCTTCATGGTACATGAT ] [-] EMBL CB629479 [ TGTTCAGGCATAGTCGCCTGCATTGGTTGTTGTTTGAACCTGGCGCTATGCCAAAACTCCAAAGGCTTTCTATTGAGTTGTTTGCACAAAAAGCAGCATCCAACCTTGGGTTTGAGCAGAGCTTTGTGCACCTTTCCAGCCTCCAGCATCTAATCGTCGTTCTTGATTGTTCTGATG CCACTACAAGGGACGTGAAAGCTTTGGAAGATGCCATTAGGAACGTGGCCAGCATCCAGACTCGCTGTCTTACTCTCGAAATTCTAAGGCGCTATGAAGATGAAATGGTAAAGGAAGACGAAGAGGAGCAGCTAAAAGGCAGTACAG AGGGAGGTGGAACTGAAGAGCATCATATTCAGTAGCCACTGATCATAGTCGGAAACCAGAAGCGCTGGAAGCCAGTGCTATTCGGGAATTCAGACAAAGTGCAAGCTAGCTAAACATTTAATATATGGTCCTG TTGAGTTAGCGCCGTACCCATTTCTGCTCTGCGTTTCTTCATGGTACATGATGTCTGTGTGTCTGGGGATCGTGTGCGTTTGTCCCATGGGCTCTTACGCATGCTTGTTCATGTGCGAGCGCGTCGGAGTTAGTAGGCGTCATGTGGACATGTGCTTTCTCCCTTGGGATTGCGCGGCTCAGTCGGGAAGCGCATGATGGAGTCGTAGGGCGCATGGCGAGGAGAGCGCTCGATCGTGGGATGGCACGATCGCCGAGCTATTTAAGTTAATAAATGCATCAGAAAATGCTACAAGCTT] consensusID : consensus_9646#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 782 fasta sequence [AAGGGGATTTTAAGTGTATAACTTTTGTGTCTATTTNACGTACCCCTAATATAAGGAAGATCTTGGTTGAAAAAAAAAAAAAAGACAATACAAGGGGATTTTAAGTGTATAACTTTTGTGTCTATTTCACGTACCCCTAATATAAGGAAGATCTTGGTTGAAAAAAAAAAAGACAATACAAGGGGATTTTAAGTGTATAACTTTTGTGTCTATTTCACGTACCCCTAATATAAGGAAGATCTTGGTTGAAAAAAAAAAAAAAGACAATACAAGGGGATTTTAAGTGTATAACTTTTGTGTCTATTTCACGTACCCCTAATATAAGGAAGATCTTGGTTGAAAAAAAAAAAGACAATACAAGGGGATTTTAAGTGTATAACTTTTGTGTCTATTTCACGTACCCCTAATATAAGGAAGATCTTGGTTGAAAAAAAAAAAAGACAATACAAGGGGATTTTAAGNGTATAACTTTTGTGTCTATTTCACGTACCCCTAATATAAGGAAGATCTTGGTTGAAAAAAAAAAAAAAGACAATACAAGGGGATTTTAAGGGTATAACTTTTGTGTCTATTTCACGTACCCCTAATATAAGGAAGATCTTGGTTGAAAAAAAAAAAAAAGACAATACAAGGGGATTTTAAGGGNATAACTTTTGGGGCTATTTCACGTACCCCTAATATAAGGAAGATCTTGGNTGAAAAAAAAAAAAGACATTNCCNGGGGGATTTTAAGGGGATAACTTTTGGGGCTATTTCACGGACCCCCTAATATAAGGGAANAT] [+] EMBL CA767454 [AAGGGGATTTTAAGTGTATAACTTTTGTGTCTATTTNACGTACCCCTAATATAAGGAAGATCTTGGTTGAAAAAAAAAAAAAAGACAATACAAGGGGATTTTAAGTGTATAACTTTTGTGTCTATTTCACGTACCCCTAATATAAGGAAGATCTTGGTTGAAAAAAAAAAAGACAATACAAGGGGATTTTAAGTGTATAACTTTTGTGTCTATTTCACGTACCCCTAATATAAGGAAGATCTTGGTTGAAAAAAAAAAAAAAGACAATACAAGGGGATTTTAAGTGTATAACTTTTGTGTCTATTTCACGTACCCCTAATATAAGGAAGATCTTGGTTGAAAAAAAAAAAGACAATACAAGGGGATTTTAAGTGTATAACTTTTGTGTCTATTTCACGTACCCCTAATATAAGGAAGATCTTGGTTGAAAAAAAAAAAAGACAATACAAGGGGATTTTAAGNGTATAACTTTTGTGTCTATTTCACGTACCCCTAATATAAGGAAGATCTTGGTTGAAAAAAAAAAAAAAGACAATACAAGGGGATTTTAAGGGTATAACTTTTGTGTCTATTTCACGTACCCCTAATATAAGGAAGATCTTGGTTGAAAAAAAAAAAAAAGACAATACAAGGGGATTTTAAGGGNATAACTTTTGGGGCTATTTCACGTACCCCTAATATAAGGAAGATCTTGGNTGAAAAAAAAAAAAGACATTNCCNGGGGGATTTTAAGGGGATAACTTTTGGGGCTATTTCACGGACCCCCTAATATAAGGGAANAT] consensusID : consensus_9646#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 527 fasta sequence [GAAGCGAAGGGAAAAACACGGGAGCAAGTAGGAGAGAACTACTTCAATGAGCTTATAAATAGAAGCTTGATCCAACCAGTTTATATCCAATATGATGGTAGGGCCAGTTGCTGCCGAGTCCACGATATTGTGCTTGATCTTATCATTAGCCTATCAACTGGACAGAATTTCGTCACAATAGTGCATGAACAACAGCATTGGAGTTCTTTCAAGAAGATTCGGAGGACCTGGTTCCCATCCAATGGCACAGATAATAGAATAGTCAAGGAGATTACGAACAACTGCTCACATGTTCGTTCGCTGTTCTTTGACAGTCCTAAACCGGAGCAAATACCACAATTTAAGAAATGCCATGCTCTGCGGGTATTGGTTCTGGATGGGTGCATGAGCCTGGAGAGCCAGCATATTAACAGCCTAACATACCTTTTCCAGTTGAAGTATCTGAAGCTCAATGTTGCNNATGNNNCCGNNNTGNNNNNGGATATTGGNNNNCTGCANNNNNNNNNNNCACTAATTANNCATGNANN] [+] EMBL CF197115 [GAAGCGAAGGGAAAAACACGGGAGCAAGTAGGAGAGAACTACTTCAATGAGCTTATAAATAGAAGCTTGATCCAACCAGTTTATATCCAATATGATGGTAGGGCCAGTTGCTGCCGAGTCCACGATATTGTGCTTGATCTTATCATTAGCCTATCAACTGGACAGAATTTCGTCACAATAGTGCATGAACAACAGCATTGGAGTTCTTTCAAGAAGATTCGGAGGACCTGGTTCCCATCCAATGGCACAGATAATAGAATAGTCAAGGAGATTACGAACAACTGCTCACATGTTCGTTCGCTGTTCTTTGACAGTCCTAAACCGGAGCAAATACCACAATTTAAGAAATGCCATGCTCTGCGGGTATTGGTTCTGGATGGGTGCATGAGCCTGGAGAGCCAGCATATTAACAGCCTAACATACCTTTTCCAGTTGAAGTATCTGAAGCTCAATGTTGCNNATGNNNCCGNNNTGNNNNNGGATATTGGNNNNCTGCANNNNNNNNNNNCACTAATTANNCATGNANN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9646#0 GAGAATCAAGTGAGTTAGGCTGATCTCGCCACCGATTCCCCTCCGATTAACCCACCTAGA 60 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 ------------------------------------------------------------ consensus_9646#0 AGTCGCTTAGAGGCGAGGCGAGGCGACTAGGCTGGCTCTGCCTCCTTCTGCTGGCGGCAG 120 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 ------------------------------------------------------------ consensus_9646#0 CTCCCAGCAGGTTGCCACCTCCACCGTGCGTCGCTCCTTTCCCGGCGTCTCCTCCCGTGG 180 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 ------------------------------------------------------------ consensus_9646#0 CGCGGAGCACGAATCAAGCAGTTGAGAGTGGAACAGAGATGGCAGGAGCATTTGTTAGTG 240 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 ------------------------------------------------------------ consensus_9646#0 CTTCAGTAGGGGTGCTGAATCCTCTTCTAACCAAGCTTTCCGCCTTGGTCGAGGGAGAGT 300 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 ------------------------------------------------------------ consensus_9646#0 ACAAGCTGCTCAAAAGTGTGAAGAAGGATATCATCTTTTTGAGGAATGAGCTCAGCAGCA 360 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 ------------------------------------------------------------ consensus_9646#0 TCAGTGTCTTGCTTGAGCATCTGTCGACCAAGGAGGACAAGCTTGATGGGCCGACCAAGG 420 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 ------------------------------------------------------------ consensus_9646#0 AGTGGAGGAACAACATGCTCGAGCTAGCTTATGATATTGAGGATTGCATCGACCTCTTCA 480 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 ------------------------------------------------------------ consensus_9646#0 TCCACAAGTTGAGTTGTGGCGATGCGAATGCCAACTTTGTTCAGAAGATAGGAAGCAAGA 540 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 ------------------------------------------------------------ consensus_9646#0 TAAAGAAGTTATGGGGCAAACACCAGATCACAGAGTGTATCCAAGAACTGAAGAATCGGG 600 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 ------------------------------------------------------------ consensus_9646#0 TTATGGAGGAGGATCAACGTCGCAAGAGGAATCAGATCGATGATTTCATCTCCGAGCCAA 660 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 ------------------------------------------------------------ consensus_9646#0 GTGTGGTGGAAATTGATCCCCGTCTACCGGCATTGTATGAGGAGGTGGAGAGGCTCGTGG 720 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 ------------------------------------------------------------ consensus_9646#0 GGATTGATGGTCCAAGGGAGAAGATCATTAAGTGGATCATGACCAAAGGCAAGCCATTAG 780 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 ------------------------------------------------------------ consensus_9646#0 AGCAACGTAAAGTGGTTTCTATTGTTGGTTTGGGTGGTCTTGGAAAGACAACTCTAGCTA 840 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 ------------------------------------------------------------ consensus_9646#0 ATGAAGTGTACAAGACAATACAAGGGGATTTTAAGTGTATAACTTTTGTGTCTATTTCAC 900 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 ------------------------------------------------------------ consensus_9646#0 GTACCCCTAATATAAGGAAGATCTTGGTTGATATGCTTAAAGGGCTCGGGAGCAATGGAG 960 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 ------------------------------------------------------------ consensus_9646#0 ATGTATCGGAAGATGAGCAGAACCTCATCAGTCATCTTCGAGGATTCTTGAAAGATAAAA 1020 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 ------------------------------------------------------------ consensus_9646#0 GGTACCTCATTGTTTTTGATGACATTTGGGACATAGGTGCGTGGAAGGTGGTCAATTGTG 1080 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 ------------------------------------------------------------ consensus_9646#0 CTTTCCCAGAGAATAATTTGGGCAGTATAATCATAACAACAACAAGAAACACTGCCGTAG 1140 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 ------------------------------------------------------------ consensus_9646#0 CTGAAGCATGCAGCCGTACCACATCTGAAGGCTATCTTCACAGCATGCAGCCACTAGAAG 1200 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 ------------------------------------------------------------ consensus_9646#0 AGCAAGATTCACAGAGATTATTTTACCGGAGAGCTTTTAATTCTGAGAGTTGCTGCCCGC 1260 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 ------------------------------------------------------------ consensus_9646#0 CTCACCTGGAAGACATCTCTCATGCCATCATATCGAAATGTCGTAGTTTACCATTAGCTA 1320 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 ------------------------------------------------------------ consensus_9646#0 TAATCTCCATAGCTAGCTTGCTATCAATCAAACCTGATACAGAGGACCAGTGGATGCAAG 1380 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 ------------------------------------------------------------ consensus_9646#0 TGCACAATTCTATTGGTGTTACACTAAACTCAGACGTCGAAGTGAGAAAAATTTTGATGC 1440 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 ------------------------------------------------------------ consensus_9646#0 TCAGTTATTATGATCTTCCTTATCCCCTGAAAAATTGTCTGTTGTATCTCAGCATGTATC 1500 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 ------------------------------------------------------------ consensus_9646#0 CAGAGGATTATGTAATTGATAGACAAGAACTTATATGGAGATGGATAGCTGAAGGATTCA 1560 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 ------------------------------------------------------------ consensus_9646#0 TCATTGAAGCGAAGGGAAAAACACGGGAGCAAGTAGGAGAGAACTACTTCAATGAGCTTA 1620 consensus_9646#2 -----GAAGCGAAGGGAAAAACACGGGAGCAAGTAGGAGAGAACTACTTCAATGAGCTTA 55 consensus_9646#1 -----------AAGGGGATTTTAAGTGTATAACTT---TTGTGTCTATTTNACGTACCCC 46 ***** * * * * ** * * ** * * * consensus_9646#0 TAAATAGAAGCTTGATCCAACCAGTTTATATCCAATATGATGGTAGGGCCAGTTGCTGCC 1680 consensus_9646#2 TAAATAGAAGCTTGATCCAACCAGTTTATATCCAATATGATGGTAGGGCCAGTTGCTGCC 115 consensus_9646#1 TAA-TATAAGGAAGATCT---TGGTTGAAAAAAAAAAAAAAGACAATACAAGGGGATTTT 102 *** ** *** **** *** * * ** * * * * * ** * * consensus_9646#0 GAGTCCACGA-TATTGTGCTTGATCTTATCATTAGCCTATCAACTGGACAGAATTTCGTC 1739 consensus_9646#2 GAGTCCACGA-TATTGTGCTTGATCTTATCATTAGCCTATCAACTGGACAGAATTTCGTC 174 consensus_9646#1 AAGTGTATAACTTTTGTGTCTA----TTTCACGTACCCCTAATATAAGGAAGATCTTGGT 158 *** * * * ***** * * *** ** * * * * ** * * consensus_9646#0 ACAATAGTGCATGAACAACAGCATTGGAGTTCTTTCAAGAAGATTCGGAGGACCTGGTTC 1799 consensus_9646#2 ACAATAGTGCATGAACAACAGCATTGGAGTTCTTTCAAGAAGATTCGGAGGACCTGGTTC 234 consensus_9646#1 TGAAAAAAAAAAAGACAATACAA--GGGGATTTTAAGTGTATAACTTTTGTGTCTATTTC 216 ** * * **** * * ** * * ** * * * * ** *** consensus_9646#0 CCAT-CCAATGGCACAGATAATAGAATAGTCAAGGAGATTACGAACAACTGCTCACATGT 1858 consensus_9646#2 CCAT-CCAATGGCACAGATAATAGAATAGTCAAGGAGATTACGAACAACTGCTCACATGT 293 consensus_9646#1 ACGTACCCCTAATATAAGGAAGATCTTGGTTGAAAAAAAAAAAAAAGACAATACAAGGGG 276 * * ** * * * ** * * ** * * * * ** ** ** * consensus_9646#0 TCGTTCGCTGTTCTTTGACAGTCCTAAACCGGAGCAAATACCAC-AATTTAAGAAATGCC 1917 consensus_9646#2 TCGTTCGCTGTTCTTTGACAGTCCTAAACCGGAGCAAATACCAC-AATTTAAGAAATGCC 352 consensus_9646#1 ATTTTAAGTGTA---TAACTTTTGTGT-CTATTTCACGTACCCCTAATATAAGGAAGATC 332 ** *** * ** * * * ** **** * *** **** ** * consensus_9646#0 ATGCTCTGCGGGTATTGGTTCTGGATGGGTGCATGAGCCTGGAGAGCCAGCATATTAACA 1977 consensus_9646#2 ATGCTCTGCGGGTATTGGTTCTGGATGGGTGCATGAGCCTGGAGAGCCAGCATATTAACA 412 consensus_9646#1 TTGGTTGAAAAAAAAAAAGACAATACAAGGGGAT--TTTAAGTGTATAACTTTTGTGTCT 390 ** * * * * * * ** * * * * * * consensus_9646#0 GCCTAACATACCTTTTCCAGTTGAAGTATCTGAAGCTCAATGTTGCAAATGTTAC-CGAG 2036 consensus_9646#2 GCCTAACATACCTTTTCCAGTTGAAGTATCTGAAGCTCAATGTTGCNNATGNNNC-CGNN 471 consensus_9646#1 ATTTCACGTACCCCTAATATAAGGAAGATCTTGGTTGAAAAAAAAAAAAGACAATACAAG 450 * ** **** * * * * **** ** * * consensus_9646#0 ATGCCCAAGGATATTGGACGGCTGCAGCAACTAGAAACACTAATTATTCGTGGAGGAGGA 2096 consensus_9646#2 NTGNNNNNGGATATTGGNNNNCTGCANNNNNNNNNNNCACTAATTANNCATGNANN---- 527 consensus_9646#1 GGGATTTTAAGNGTATAACTTTTGTGTCTATTTCACGTACCCCTAATATAAGGAAGATCT 510 * * ** ** * * * * consensus_9646#0 CATGTCAACGAAATAAACATTCCGTCAAGTGTTTGTAGACTGCAAAAACTAGAGCGCCTA 2156 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 TGGTTGAAAAAAAAAAAAAAGAC----AATACAAGGGGATTTTAAGGG-TATAACTTTTG 565 consensus_9646#0 ATTGTTGATTACCCAATGAGATTGCCAGATGAAATTGGATTTTTGCAAGCTTTGGAGATG 2216 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 TGTCTATTTCACGTACCCCTAATATAAGGAAGATCTTGGTTGAAAAAAAAAAAAAAGACA 625 consensus_9646#0 CTATCTCTTTTTTACAACATAGAGTACAGCATAAAATGTTTACAAGAGCTCCGTCGGCTG 2276 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 ATACAAGGGGATTTTAAGG--GNATAACTTTTGGGGCTATTTCACGTACCCC-TAATATA 682 consensus_9646#0 ACCAGACTAAGGTATCTGCGCATAAGGACGCCTTTTGGAGGTGATGTAGCAAGGTTCGAG 2336 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 AGGAAGATCTTGGNTGAAAAAAAAAAAAGACATTNCCNGGGGGATTTTAAGGG----GAT 738 consensus_9646#0 AGGTACAAGGACGCCTTTTACATGACTCTCGATGAGTTAGGTAAAAATAGCCTTCAATCA 2396 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 AACTTTTGGGGC-TATTTCACGGACCCCCTAATA---TAAGGGAANAT------------ 782 consensus_9646#0 TTACATGTACATGTTACAACCAAGTTTTCAGATACATTGATGGATTCATGTTGTAGTAGT 2456 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 ------------------------------------------------------------ consensus_9646#0 GCTCCCGGTCTCAGAGAGCTTTCTACTTCTGGCGTTGGAATATCAAAACTTTCGGAGCAG 2516 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 ------------------------------------------------------------ consensus_9646#0 ATGATTTCCCTTTCTAATCTTGCCTATCTTGTGATCTTCTATAATACTAGAAGCAATGAT 2576 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 ------------------------------------------------------------ consensus_9646#0 CAGAAAGATATCAACCTCCTTGGGTGTATACCCAAGCTTCTCTATCTTAAAGTAATATTC 2636 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 ------------------------------------------------------------ consensus_9646#0 GCCCAAGGCTGGGAGGATGGACTCACTGTAGGCTGTGGTGGATTTCCCTGTCTAAAGGAG 2696 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 ------------------------------------------------------------ consensus_9646#0 TTGATGTTCAGGCATAGTCGCCTGCATTGGTTGTTGTTTGAACCTGGCGCTATGCCAAAA 2756 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 ------------------------------------------------------------ consensus_9646#0 CTCCAAAGGCTTTCTATTGAGTTGTTTGCACAAAAAGCAGCATCCAAACTTGGGTTTGAG 2816 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 ------------------------------------------------------------ consensus_9646#0 CAGAGCTTTGTGCACCTTTCCAGCCTCCAGCATCTAATCGTCGTTCTCGATTGTTCTGAT 2876 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 ------------------------------------------------------------ consensus_9646#0 GCCCACTACAAGGGACGTGAAAGCTTTGGAAGATGCCATTAGGAACGTGGCCAGCATCCA 2936 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 ------------------------------------------------------------ consensus_9646#0 GACTCGCTGTCTTACTCTCGAAATTCTAAGGCGCTATGAAGATGAAATGGTAAAGGAAGA 2996 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 ------------------------------------------------------------ consensus_9646#0 TGAAGAGGAGCAGCTAAAAGGCAGTACAGAGGGAGGTGGAACTGAAGAGCATCATATTCA 3056 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 ------------------------------------------------------------ consensus_9646#0 GCAGCCACTGATCATAGTCGGAAACCAGAAGCGCTGGAAGCCAGTGCTATTCGGGAATTC 3116 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 ------------------------------------------------------------ consensus_9646#0 AGACAAAGTGCAAGCTAGCTAAACATTTAATATATGGTCCTGTTGAGTTAGCGCCGTACC 3176 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 ------------------------------------------------------------ consensus_9646#0 CATTTCTGCTCTGCGTTTCTTCATGGTACATGATGTCTGTGTCTGGGGATCGTGTGCGTT 3236 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 ------------------------------------------------------------ consensus_9646#0 TGTACCATGGGCTCTTACGCATGCTTGTTCATGTGCGAGCGCGTCGGAGTTAGTAGGCGT 3296 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 ------------------------------------------------------------ consensus_9646#0 CATGTGGACATGTGCTTTCTGCCTTGGGATTGCGCGGCTCAGTCGGGAAGCGCATGATGG 3356 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 ------------------------------------------------------------ consensus_9646#0 AGTCGTAGGGCGCATGGCGAGGAGAGCGCTCGATCGTGGGATGGCACGATCGCCGAGCTA 3416 consensus_9646#2 ------------------------------------------------------------ consensus_9646#1 ------------------------------------------------------------ consensus_9646#0 TTTAAGTTAATAAATGCATCAGAAAATGCTACAAGCTT 3454 consensus_9646#2 -------------------------------------- consensus_9646#1 -------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||