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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9650#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1361 fasta sequence
[TCTGCGTGCTGCAGTTGGATGAGCTCGATTTCAACTTGCTGTGCGTGTAGAGGAATGCAGTACAGCCTGTACAGGGTCAAGCTTTGCTGAGAATTGTTTGAAGGCGCTGCTAGATTTGAGAATTTTATAGATTGGCATCACATCCGGCCTTTTATCTCGACTTTAAAGTTCTGATGGATGATGGATTATGGATCAAACAGAGTTTATGAAAATTATTTGAGGGCACAGACGAGAGAATTTAGTATTAGAAAGTTGAAAGGTTGACTTTAAAAAGTTCTCTAAGAAATGCCGATGAAGAAAGTTTATGCAAAAATCATACCGTTTGGGAGTTTGGGAAGTGCGCCGCAATAATCAAAAATCCGTGAGAGGAAAAGAATGCTTTTTTTAATTATTTTTCATCTCATTTTATACTCTGCATTTGCTGTTTCATTCTAGCATTTTGGATTTAATTAATGTGCTAGTTATTCAATTAACTTACACATTTGCTGGGCTCTACAAAACCTACTCAATTCCGTGATGAACTGGCTACCTTAAATTCAGTCCAAGGTTACAGTCAACCATTTTATCTGGTACAAGTCTATAAGATAGTAAATTATATTCAATATTGATCTTGTTTACATCCAGACTGTGCTGGTATCTTCGCTGTCACAATTTGTTCATGTTAACGGTCGTTTAAAACCAAGTAGAATACAGATTTAGTTTAGAAAAAATAAACAATAAACTTATTTTGCACTTTATTTTAGTCGAAATGCATCTGCACTTTGGTTGTGCAGCAGGCACAAAATAAACAGAACAAAATTTCTAACAGATTCAGGGGAAGCTATAGCATGCTACACATGTTTTGAGCCATTTGGTACTCTTGCTCTTCGATACTCGATTGCTGGTTCTTTCATGGGTTGCAGGTTTTAGTTGTACAGGCAAGCGAGGCGCCGAATGACTTGAGAAGTACAGCTCAAGCCAACCCAGTGGGGGAGAATACGCATGATGCGACGAAGAGGAATGCAAGCGAATCTTCAGCGTTCTCGAGCACGAAAGCGGCTCCAGAAGGAACCTACAAAGCTAGAGAAATAGTCGCCTACGATGATCTGTTCTGAACTTCTAATAACCAGCCTTCTTTAGGGAGGAGGTGAGACAACCATTCAGGTTTGTTCTTGTACACTGCTAGGGTCTTTAGGTGAGTAAGCTATGGGTATTTTTTAGTGTGTGAAGGTACCTTCAGATGGGTAGGTGTTTCTTGTATTCAGCATGTATTGTGGAAGTTATCATCAAAACATGAGAATTTATGTATGTTAGATTGTTAATATTGACAGTGCCTTACCATCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK066370 [TCTGCGTGCTGCAGTTGGATGAGCTCGATTTCAACTTGCTGTGCGTGTAGAGGAATGCAGTACAGCCTGTACAGGGTCAAGCTTTGCTGAGAATTGTTTGAAGGCGCTGCTAGATTTGAGAATTTTATAGATTGGCATCACATCCGGCCTTTTATCTCGACTTTAAAGTTCTGATGGATGATGGATTATGGATCAAACAGAGTTTATGAAAATTATTTGAGGGCACAGACGAGAGAATTTAGTATTAGAAAGTTGAAAGGTTGACTTTAAAAAGTTCTCTAAGAAATGCCGATGAAGAAAGTTTATGCAAAAATCATACCGTTTGGGAGTTTGGGAAGTGCGCCGCAATAATCAAAAATCCGTGAGAGGAAAAGAATGCTTTTTTTAATTATTTTTCATCTCATTTTATACTCTGCATTTGCTGTTTCATTCTAGCATTTTGGATTTAATTAATGTGCTAGTTATTCAATTAACTTACACATTTGCTGGGCTCTACAAAACCTACTCAATTCCGTGATGAACTGGCTACCTTAAATTCAGTCCAAGGTTACAGTCAACCATTTTATCTGGTACAAGTCTATAAGATAGTAAATTATATTCAATATTGATCTTGTTTACATCCAGACTGTGCTGGTATCTTCGCTGTCACAATTTGTTCATGTTAACGGTCGTTTAAAACCAAGTAGAATACAGATTTAGTTTAGAAAAAATAAACAATAAACTTATTTTGCACTTTATTTTAGTCGAAATGCATCTGCACTTTGGTTGTGCAGCAGGCACAAAATAAACAGAACAAAATTTCTAACAGATTCAGGGGAAGCTATAGCATGCTACACATGTTTTGAGCCATTTGGTACTCTTGCTCTTCGATACTCGATTGCTGGTTCTTTCATGGGTTGCAGGTTTTAGTTGTACAGGCAAGCGAGGCGCCGAATGACTTGAGAAGTACAGCTCAAGCCAACCCAGTGGGGGAGAATACGCATGATGCGACGAAGAGGAATGCAAGCGAATCTTCAGCGTTCTCGAGCACGAAAGCGGCTCCAGAAGGAACCTACAAAGCTAGAGAAATAGTCGCCTACGATGATCTGTTCTGAACTTCTAATAACCAGCCTTCTTTAGGGAGGAGGTGAGACAACCATTCAGGTTTGTTCTTGTACACTGCTAGGGTCTTTAGGTGAGTAAGCTATGGGTATTTTTTAGTGTGTGAAGGTACCTTCAGATGGGTAGGTGTTTCTTGTATTCAGCATGTATTGTGGAAGTTATCATCAAAACATGAGAATTTATGTATGTTAGATTGTTAATATTGACAGTGCCTTA ]
[+] EMBL CB000425 [ ccGTTTTAGTTGTACAGGCAAGCGAGGCGCCGCCTGACTTGAGAAGTACAGCTCAAGCCAACCCAGTGGGGGAGAATACGCATGATGCGACGAAGAGGAATGCAAGCGAATCTTCAGCGTTCTCGAGCACGAAAGCGGCTCCAGAAGGAACCTACAAAGCTAGAGAAATAGTCGCCTACGATGATCTGTTCTGAACTTCTAATAACCAGCCTTCTTTAGGGAGGAGGTGAGACAACCATTCAGGTTTGTTCTTGTACACTGCTAGGGTCTTTAGGTGAGTAAGCTATGGGTATTTTTTAGTGTGTGAAGGTACCTTCAGATGGGTAGGTGTTTCTTGTATTCAGCATGTATTGTGGAAGTTATCATCAAAACATGAGAATTTATGTATGTTAGATTGTTAATATTGACAGTGCCTTACCATCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_9650#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 800 fasta sequence
[CAAGCGCGGGCGCGCGAGCCCCGACCCTCCGGCGAAGCGCCGCCGCCGCGGCCGCGGCCACGGCCACGGCCCTGGCCCGCCGGAGTTAGAGGCCGACGAGCTGGAGGCTCCTCCGGCGCCGGTACAGGCTCCATCGGCGGCGGCGGCGGCTTCGGAGCCGTTGCTAGTGATGGTCGCGGGGCTGCCGCCCGGGTGCGGCGTGATGGAGCTCAAGTCGCGGCTCGGGGCGTACGGCCCCATCGCGCGCACCCGCATAGACGCCGCCTCGGCCACCGGGTACGTCACCTTCCGCTCCGCCGCGGCCGCCATGGCCGCCATTGCTGCCTCCCTCGACCCCGACGGTGGCGTCACCGTCGGATCCAAGAAGGTTTTAGTTGTACAGGCAAGCGAGGCGCCGAATGACTTGAGAAGTACAGCTCAAGCCAACCCAGTGGGGGAGAATACGCATGATGCGACGAAGAGGAATGCAAGCGAATCTTCAGCGTTCTCGAGCACGAAAGCGGCTCCAGAAGGAACCTAC-AAAGCTAGAGAAATAGTCGCCTACGATGATCTGTTCTGAACTTCTAATAACCAGCCTTCTTTAGGGAGGAGGTGAGACAACCATTCAGGTTTGTTCTTGTACACTGCTAGGGTCTTTAGGTGAGTAAGCTATGGGTATTTTTTAGTGTGTGAAGGTACCTTCAGATGGGTAGGTGTTTCTTGTATTCAGCATGTATTGTGGAAGTTATCATCAAAACATGAGAATTTATGTATGTTAGATTGTTAATATTGACAGTGCCTTACCATCTTCTCAAAAAAAA]
[+] EMBL CA753256 [CAAGCGCGGGCGCGCGAGCCCCGACCCTCCGGCGAAGCGCCGCCGCCGCGGCCGCGGCCACGGCCACGGCCCTGGCCCGCCGGAGTTAGAGGCCGACGAGCTGGAGGCTCCTCCGGCGCCGGTACAGGCTCCATCGGCGGCGGCGGCGGCTTCGGAGCCGTTGCTAGTGATGGTCGCGGGGCTGCCGCCCGGGTGCGGCGTGATGGAGCTCAAGTCGCGGCTCGGGGCGTACGGCCCCATCGCGCGCACCCGCATAGACGCCGCCTCGGCCACCGGGTACGTCACCTTCCGCTCCGCCGCGGCCGCCATGGCCGCCATTGCTGCCTCCCTCGACCCCGACGGTGGCGTCACCGTCGGATCCAAGAAGGTTTTAGTTGTACAGGCAAGCGAGGCGCCGAATGACTTGAGAAGTACAGCTCAAGCCAACCCAGTGGGGGAGAATACGCATGATGCGACGANGAGGAATGCAAGCGAATCTTCAGCGTTCTCGAGCACGAGAGCGGCTCCAGAAGGAACCTACAAAAGCTAGAGAAATAGTCGC ]
[+] EMBL AU174789 [ CTCAAGTCGCGGCTCGGGGCGTACGGCCCCATCGCGCGCACCCGCATAGACGCCGCCTCGGCCACCGGGTACGTCACCTTCCGCTCCGCCGCGGCCGCCATGGCCGCCATTGCTGCCTCCCTCGACCCCGACGGTGGCGTCACCGTCGGATCCAAGAAGGTTTTAGTTGTACAGGCAAGCGAGGCGCCGAATGACTTGAGAAGTACAGCTCAAGCCAACCCAGTGGGGGAGAATACGCATGATGCGACGAAGAGGAATGCAAGCGAATCTTCAGCGTTCTCGAGCACGAAAGCGGCTCCAGAAGGAACCTAC AAAGCTAGAGAAATAGTCGCCTACGATGATCTGTTCTGAACTTCTAATAACCAGCCTTCTTTAGGGAGGAGGTGAGACAACCATTCAGGTTTGTTC ]
[+] EMBL CB966191 [ ATGGCCGCCATTGCTGCCTCCCTCGA CCCGACGGTGGCGTCA CGTCGGATCCAAGAAGGTTTTAGTTGTACAGGCAAGCGAGGCGCCGAATGACTTGAGAAGTACAGCTCAAGCCAACCCAGTGGGGGAGAATACGCATGATGCGACGAAGAGGAATGCAAGCGAATCTTCAGCGTTCTCGAGCACGAAAGCGGCTCCAGAAGGAACCTAC AAAGCTAGAGAAATAGTCGCCTACGATGATCTGTTCTGAACTTCTAATAACCAGCCTTCTTTAGGGAGGAGGTGAGACAACCATTCAGGTTTGTTCTTGTACACTGCTAGGGTCTTTAGGTGAGTAAGCTATGGGTATTTTTTAGTGTGTGAAGGTACCTTCAGATGGGTAGGTGTTTCTTGTATTCAGCATGTATTGTGGAAGTTATCAT ]
[+] EMBL AU174788 [ TCCCTCGACCCCGACGGTGGCGTCACCGTCGGATCCAAGAAGGTTTTAGTTGTACAGGCAAGCGAGGCGCCGAATGACTTGAGAAGTACAGCTCAAGCCAACCCAGTGGGGGAGAATACGCATGATGCGACGAAGAGGAATGCAAGCGAATCTTCAGCGTTCTCGAGCACGAAAGCGGCTCCAGAAGGAACCTAC AAAGCTAGAGAAATAGTCGCCTACGATGATCTGTTCTGAACTTCTAATAACCAGCCTTCTTTAGGGAGGAGGTGAGACAACCATTCAGGTTTGTTCTTGTACACTGCTAGGGTCTTTAGGTGAGTAAGCTATGGGTATTTTTTAGTGTGTGAAGGTACCTTCAGATGGGTAGGTGTTTCTTGTATTCAGCATGTATTGTGGAAGTTATCATCAAAACATGAGAATTTATGTATGTTAGATTGTTAATATTGACAGTGCCTTACCATCTTCTCAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9650#0 TCTGCGTGCTGCAGTTGGATGAGCTCGATTTCAACTTGCTGTGCGTGTAGAGGAATGCAG 60
consensus_9650#1 ------------------------------------------------------------
consensus_9650#0 TACAGCCTGTACAGGGTCAAGCTTTGCTGAGAATTGTTTGAAGGCGCTGCTAGATTTGAG 120
consensus_9650#1 ------------------------------------------------------------
consensus_9650#0 AATTTTATAGATTGGCATCACATCCGGCCTTTTATCTCGACTTTAAAGTTCTGATGGATG 180
consensus_9650#1 ------------------------------------------------------------
consensus_9650#0 ATGGATTATGGATCAAACAGAGTTTATGAAAATTATTTGAGGGCACAGACGAGAGAATTT 240
consensus_9650#1 ------------------------------------------------------------
consensus_9650#0 AGTATTAGAAAGTTGAAAGGTTGACTTTAAAAAGTTCTCTAAGAAATGCCGATGAAGAAA 300
consensus_9650#1 ------------------------------------------------------------
consensus_9650#0 GTTTATGCAAAAATCATACCGTTTGGGAGTTTGGGAAGTGCGCCGCAATAATCAAAAATC 360
consensus_9650#1 ------------------------------------------------------------
consensus_9650#0 CGTGAGAGGAAAAGAATGCTTTTTTTAATTATTTTTCATCTCATTTTATACTCTGCATTT 420
consensus_9650#1 ------------------------------------------------------------
consensus_9650#0 GCTGTTTCATTCTAGCATTTTGGATTTAATTAATGTGCTAGTTATTCAATTAACTTACAC 480
consensus_9650#1 -----------------------------------------------------------C 1
*
consensus_9650#0 ATTTGCTGGGCTCTACAAAACCTACTCAATTCCGTGATGAACTGGCTACCTTAAATTCAG 540
consensus_9650#1 AAGCGC-GGGCGCGCGAGCCCCGACCC--TCCGGCGAAGCGCCG-CCGCCGCGGCCGCGG 57
* ** **** * * ** ** * * * * ** * * * * ** * *
consensus_9650#0 TCCAAGGTTACAGTCAACCATTTTATCTGGTACAAGTCTATAAGATAGTAAATTATATTC 600
consensus_9650#1 -CCACGGCCACGGCCCTGGCCCGCCGGAGTTAGAGGCCGACGAGCTGGAGGCTCCT--CC 114
*** ** ** * * * ** * * * * ** * * * * *
consensus_9650#0 AATATTGATCTTGTTTACATCCAGACTGTGCTGGTATCTTCGCTGTCACAATTTGTTCAT 660
consensus_9650#1 GGCGCCGGTACAGGCTCCATC--GGCGGCGGCGGCGGCTTCGGAGCC-------GTTGCT 165
* * * * **** * * * * ** ***** * * *** *
consensus_9650#0 GTTAACGGTCGTTTAAAACCAAGTAGAATACAGATTTAGTTTAGAAAAAATAAACAATAA 720
consensus_9650#1 AGTGATGGTCG--CGGGGC----TGCCGCCCGGGTGCGGCGTGATGGAGCTCAAGTCGCG 219
* * ***** * * * * * * * * * **
consensus_9650#0 ACTTATTTTGCACTTTATTTTAGTCGAAATGCATCTGCACTTTGGTTGTGCAGCAGGCAC 780
consensus_9650#1 GCTCGGGGCGTACGGCCCCATCGC----GCGCACCCGCA--TAGACGCCGCCTCGGCCAC 273
** * ** * * *** * *** * * ** * * ***
consensus_9650#0 AAAATAAACAGAACAAAATTTC-TAACAGATTCAGGGGAAGCTATAGCATGCTACACATG 839
consensus_9650#1 CGGGTACGTCACCTTCCGCTCCGCCGCGGCCGCCATGGCCGCCATTGC------TGCCTC 327
** * * * * * ** ** ** ** * *
consensus_9650#0 TTTTGAGCCATTTGGTACTCTTGCTCTTCGATACTCGATTGCTGGTTCTTTCATGGGTTG 899
consensus_9650#1 CCTCGACCCCGACGGTGGCGTCACCGTCGGATCCAAGA---------------------- 365
* ** ** *** * * * *** * **
consensus_9650#0 CAGGTTTTAGTTGTACAGGCAAGCGAGGCGCCGAATGACTTGAGAAGTACAGCTCAAGCC 959
consensus_9650#1 -AGGTTTTAGTTGTACAGGCAAGCGAGGCGCCGAATGACTTGAGAAGTACAGCTCAAGCC 424
***********************************************************
consensus_9650#0 AACCCAGTGGGGGAGAATACGCATGATGCGACGAAGAGGAATGCAAGCGAATCTTCAGCG 1019
consensus_9650#1 AACCCAGTGGGGGAGAATACGCATGATGCGACGAAGAGGAATGCAAGCGAATCTTCAGCG 484
************************************************************
consensus_9650#0 TTCTCGAGCACGAAAGCGGCTCCAGAAGGAACCTACAAAGCTAGAGAAATAGTCGCCTAC 1079
consensus_9650#1 TTCTCGAGCACGAAAGCGGCTCCAGAAGGAACCTACAAAGCTAGAGAAATAGTCGCCTAC 544
************************************************************
consensus_9650#0 GATGATCTGTTCTGAACTTCTAATAACCAGCCTTCTTTAGGGAGGAGGTGAGACAACCAT 1139
consensus_9650#1 GATGATCTGTTCTGAACTTCTAATAACCAGCCTTCTTTAGGGAGGAGGTGAGACAACCAT 604
************************************************************
consensus_9650#0 TCAGGTTTGTTCTTGTACACTGCTAGGGTCTTTAGGTGAGTAAGCTATGGGTATTTTTTA 1199
consensus_9650#1 TCAGGTTTGTTCTTGTACACTGCTAGGGTCTTTAGGTGAGTAAGCTATGGGTATTTTTTA 664
************************************************************
consensus_9650#0 GTGTGTGAAGGTACCTTCAGATGGGTAGGTGTTTCTTGTATTCAGCATGTATTGTGGAAG 1259
consensus_9650#1 GTGTGTGAAGGTACCTTCAGATGGGTAGGTGTTTCTTGTATTCAGCATGTATTGTGGAAG 724
************************************************************
consensus_9650#0 TTATCATCAAAACATGAGAATTTATGTATGTTAGATTGTTAATATTGACAGTGCCTTACC 1319
consensus_9650#1 TTATCATCAAAACATGAGAATTTATGTATGTTAGATTGTTAATATTGACAGTGCCTTACC 784
************************************************************
consensus_9650#0 ATCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1361
consensus_9650#1 ATCTTCTCAAAAAAAA-------------------------- 800
****** ********
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||