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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 966 cluster # 966       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_966#0 length = 296 sequences # 1  
consensus_966#1 length = 163 sequences # 1  

consensusID : consensus_966#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 296
fasta sequence
                              [GGATCGATGGGAAACTGTTTTAAACACTCGGATAAACGTCTACCCATTTTTTACATGTCATCGATCAATCCCTGCATAATGCGTGGTAGCTCAGTTGCCTTATCAGCAGGCGACATTGATGAGGACGTTTTGTTCAGATTCGTAAAAGTCTGCTTTTTATTGAACGGAAATAGTATTAGCTATTTGCTAGCTAATACTACTATTAAGATTGAGAATAATAAGGGATGTAAGTGACAACTTTGTTGGTCGTCATGCATGTAAGATCGAGTTTATACAAGCTAGTTAACCTCAAAAAA]

[+] EMBL BI813749             [GGATCGATGGGAAACTGTTTTAAACACTCGGATAAACGTCTACCCATTTTTTACATGTCATCGATCAATCCCTGCATAATGCGTGGTAGCTCAGTTGCCTTATCAGCAGGCGACATTGATGAGGACGTTTTGTTCAGATTCGTAAAAGTCTGCTTTTTATTGAACGGAAATAGTATTAGCTATTTGCTAGCTAATACTACTATTAAGATTGAGAATAATAAGGGATGTAAGTGACAACTTTGTTGGTCGTCATGCATGTAAGATCGAGTTTATACAAGCTAGTTAACCTCAAAAAA]


>consensus_966#0 GGATCGATGGGAAACTGTTTTAAACACTCGGATAAACGTCTACCCATTTTTTACATGTCA TCGATCAATCCCTGCATAATGCGTGGTAGCTCAGTTGCCTTATCAGCAGGCGACATTGAT GAGGACGTTTTGTTCAGATTCGTAAAAGTCTGCTTTTTATTGAACGGAAATAGTATTAGC TATTTGCTAGCTAATACTACTATTAAGATTGAGAATAATAAGGGATGTAAGTGACAACTT TGTTGGTCGTCATGCATGTAAGATCGAGTTTATACAAGCTAGTTAACCTCAAAAAA



consensusID : consensus_966#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 163
fasta sequence
                              [GTTTTGTTCAGATTCGTAAAAGTCTGCTTTTTATTGAACGGAAATATATTAGCTATTTGCTAGCTAATACTACTATTAAGATTGAGAATAATAAGGGATGTAAGTGACACACTTTGTTGGTCGTCACATGCATGTAAGATCGAGTTTATAGCCAAAAAAAAAA]

[+] EMBL BI811688             [GTTTTGTTCAGATTCGTAAAAGTCTGCTTTTTATTGAACGGAAATATATTAGCTATTTGCTAGCTAATACTACTATTAAGATTGAGAATAATAAGGGATGTAAGTGACACACTTTGTTGGTCGTCACATGCATGTAAGATCGAGTTTATAGCCAAAAAAAAAA]


>consensus_966#1 GTTTTGTTCAGATTCGTAAAAGTCTGCTTTTTATTGAACGGAAATATATTAGCTATTTGC TAGCTAATACTACTATTAAGATTGAGAATAATAAGGGATGTAAGTGACACACTTTGTTGG TCGTCACATGCATGTAAGATCGAGTTTATAGCCAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_966#0      GGATCGATGGGAAACTGTTTTAAACACTCGGATAAACGTCTACCCATTTTTTACATGTCA 60
consensus_966#1      ------------------------------------------------------------
                                                                                 

consensus_966#0      TCGATCAATCCCTGCATAATGCGTGGTAGCTCAGTTGCCTTATCAGCAGGCGACATTGAT 120
consensus_966#1      ------------------------------------------------------------
                                                                                 

consensus_966#0      GAGGACGTTTTGTTCAGATTCGTAAAAGTCTGCTTTTTATTGAACGGAAATAGTATTAGC 180
consensus_966#1      ------GTTTTGTTCAGATTCGTAAAAGTCTGCTTTTTATTGAACGGAAATA-TATTAGC 53
                           ********************************************** *******

consensus_966#0      TATTTGCTAGCTAATACTACTATTAAGATTGAGAATAATAAGGGATGTAAGTGACA-ACT 239
consensus_966#1      TATTTGCTAGCTAATACTACTATTAAGATTGAGAATAATAAGGGATGTAAGTGACACACT 113
                     ******************************************************** ***

consensus_966#0      TTGTTGGTCGTCA--TGCATGTAAGATCGAGTTTATACAAGCTAGTTAACCTCAAAAAA 296
consensus_966#1      TTGTTGGTCGTCACATGCATGTAAGATCGAGTTTATA---GCCAAAAAA----AAAA-- 163
                     *************  **********************   ** *   **    ****  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)