These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9662#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 988 fasta sequence [GTGCTGTGCTGCTAGGGTTTAGGCGGCGGCGGCGGCGGCGGCGGCTGCGGCTTTCCGATTCCAATCCAACAAGAAGAAGATTCGGAGAGATTGCCGGCCATGTCTTCCACCGGTCGCCCCTACGGCCGTCGCGGCGGCGCCGCTCCCTCCTACGTGCCGCGCCCCCGCGCACCCAACCCCTCGCCATCCGCTCCCGCTCCCGCACGGCCGCCGCAGCAACTGCGTAAACCGGTGTTCACCACCGTGGAGCGGCTGCGGCCCCAGAGCCACGGCCACACCCTCACCGCCCGCGTCCTCTCCGCCCGCATCATCCTCGACAACCCTCCTCCCCGCGCTCGTCTCGCTGAGTGCCTCGTCGGCGACAACACCGGCACCGTCCTCTTCACCGCCCGCAACCAACAAGTTGACTTGGTGAAGCCAGGCACCACGGTCATCTTCCGCAATGCCAAGATTGACATGTTCAAGGGGACCATGAGGCTGGCAGTTGACAAATGGGGCCGGATCGAGGTGACGGACCCTGCCAGCTTTCAAGTTAAGGAAGACAACAACGTGTCGCTGGTCGAGTATGAGCTGGTGGATGTCGTCGACGAGGATTGACTACTTAGACTTTGATTGGCTCTCGGGCTGTGGACATAGATTTTTGATGCAGCGGTAGCAGTAGGTTCATCTTATCCTGGAAAGCTATTGAAAAGATTTGGAGCTGGTTATTACTTATGTACAGGGGAAGGTTCAACTGATGCTTTTGTGCAAGACCTGTTCTATCATTAGGTTTGGTTTATGAAATGTGTTGATGTTGCCGGTGGTACCTAAATCTAAATGTTGGCAAGCCTAGTGGACTTGTTTCTGTCAATTTAATGGTATGGAGTTGGATCTTGTGTCGCTGATGGTTCTACATATACGATGAAGAATATTTCTGGGATGTCTTACTACACCTTGTTGTGAGCTGCAATGTTTGCGTGCATGTTTAACAAAGCTGTGTTATATGTGT] [+] EMBL AK071627 [GTGCTGTGCTGCTAGGGTTTAGGCGGCGGCGGCGGCGGCGGCGGCTGCGGCTTTCCGATTCCAATCCAACAAGAAGAAGATTCGGAGAGATTGCCGGCCATGTCTTCCACCGGTCGCCCCTACGGCCGTCGCGGCGGCGCCGCTCCCTCCTACGTGCCGCGCCCCCGCGCACCCAACCCCTCGCCATCCGCTCCCGCTCCCGCACGGCCGCCGCAGCAACTGCGTAAACCGGTGTTCACCACCGTGGAGCGGCTGCGGCCCCAGAGCCACGGCCACACCCTCACCGCCCGCGTCCTCTCCGCCCGCATCATCCTCGACAACCCTCCTCCCCGCGCTCGTCTCGCTGAGTGCCTCGTCGGCGACAACACCGGCACCGTCCTCTTCACCGCCCGCAACCAACAAGTTGACTTGGTGAAGCCAGGCACCACGGTCATCTTCCGCAATGCCAAGATTGACATGTTCAAGGGGACCATGAGGCTGGCAGTTGACAAATGGGGCCGGATCGAGGTGACGGACCCTGCCAGCTTTCAAGTTAAGGAAGACAACAACGTGTCGCTGGTCGAGTATGAGCTGGTGGATGTCGTCGACGAGGATTGACTACTTAGACTTTGATTGGCTCTCGGGCTGTGGACATAGATTTTTGATGCAGCGGTAGCAGTAGGTTCATCTTATCCTGGAAAGCTATTGAAAAGATTTGGAGCTGGTTATTACTTATGTACAGGGGAAGGTTCAACTGATGCTTTTGTGCAAGACCTGTTCTATCATTAGGTTTGGTTTATGAAATGTGTTGATGTTGCCGGTGGTACCTAAATCTAAATGTTGGCAAGCCTAGTGGACTTGTTTCTGTCAATTTAATGGTATGGAGTTGGATCTTGTGTCGCTGATGGTTCTACATATACGATGAAGAATATTTCTGGGATGTCTTACTACACCTTGTTGTGAGCTGCAATGTTTGCGTGCATGTTTAACAAAGCTGTGTTATATGTG ] [+] EMBL AU181579 [ GGCGGCGGCGGCTGCGGCTTTCCGATTCCAATCCAACAAGAAGAAGATTCGGAGAGATTGCCGGCCATGTCTTCCACCGGTCGCCCCTACGGCCGTCGCGGCGGCGCCGCTCCCTCCTACGTGCCGCGCCCCCGCGCACCCAACCCCTCGCCATCCGCTCCCGCTCCCGCACGGCCGCCGCAGCAACTGCGTAAACCGGTGTTCACCACCGTGGAGCGGCTGCGGCCCCAGAGCCACGGCCACACCCTCACCGCCCGCGTCCTCTCCGCCCGCATCATCCTCGACAACCCTCCTCCCCGCGCTCGTCTCGCTGAGTGCCTCGTCGGCGACAACACCGGCACCGTCCTCTTCACCGCCCGCAACCAACAAGTTGACTTGGTGAAGCCAGGCACCACGGTCATCT ] [+] EMBL CA767130 [ GCTGGCAGTTGACAAATGGGGCCGGATCGAGGTGACGGACCCTGCCAGCTTTCAAGTTAAGGAAGACAACAACGTGTCGCTGGTCGAGTATGAGCTGGTGGATGTCGTCGACGAGGATTGACTACTTAGACTTTGATTGGCTCTCGGGCTGTGGACATAGATTTTTGATGCAGCGGTAGCAGTAGGTTCATCTTATCCTGGAAAGCTATTGAAAAGATTTGGAGCTGGTTATTACTTATGTACAGGGGAAGGTTCAACTGATGCTTTTGTGCAAGACCTGTTCTATCATTAGGTTAGGTTTATGAAATGTGTTGATGTTGCCGGTGGTACCTAAATCTAAATGTTGGCAAGCCTAGTGGACTTGTTTCTGTCAATTTAATGGTATGGAGTTGGATCTTGTGTCGCTGATGGTTCTACATATACGATGAAGAATATTTCTGGGATGTCTTA ] [+] EMBL CA764109 [ TTCTGTCAATTTAATGGTATGGAGTTGGATCTTGTGTCGCTGATGGTTCTACATATACGATAAAGAATATTTCTGGGATGTCTTACTACACCTTGTTGTGAGCTGCAATGTTTGCGTGCATGTTTAACAAAGCTGTGTTATATGTGT] consensusID : consensus_9662#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 883 fasta sequence [TGCTGTGCTGCTAGGGTTTAGGCGGCGGCGGCGGCGGCGGCGGCTGCGGCTTTCCGATTCCAATCCAACAAGAAGAAGATTCGGAGAGATTGCCGGCCATGTCTTCCACCGGTCGCCCCTACGGCCGTCGCGGCGGCGCCGCTCCCTCCTACGTGCCGCGCCCCCGCGCACCCAACCCCTCGCCATCCGCTCCCGCTCCCGCACGGCCGCCGCAGCAACTGCGTAAACCGGTGTTCACCACACCCTCACCGCCCGCGTCCTCTCCGCCCGCATCATCCTCGACAACCCTCCTCCCCGCGCTCGTCTCGCTGAGTGCCTCGTCGGCGACAACACCGGCACCGTCCTCTTCACCGCCCGCAACCAACAAGTTGACTTGGTGAAGCCAGGCACCACGGTCATCTTCCGCAATGCCAAGATTGACATGTTCAAGGGGACCATGAGGCTGGCAGTTGACAAATGGGGCCGGATCGAGGTGACGGACCCTGCCAGCTTTCAAGTTAAGGAAGACAACAACGTGTCGCTGGTCGAGTATGAGCTGGTGGATGTCGTCGACGAGGATTGACTACTTAGACTTTGATTGGCTCTCGGGCTGTGGACATAGATTTTTGATGCAGCGGTAGCAGTAGGTTCATCTTATCCTGGAAAGCTATTGAAAAGATTTGGAGCTGGTTATTACTTATGTACAGGGGAAGGTTCAACTGATGCTTTTGTGCAAGACCTGTTCTATCATTAGGTTTGGTTTATGAAATGTGTTGATGTTGCCGGTGGTACCTAAATCTAAATGTTGGCAAGCCTAGTGGACTTGTTTCTGTCAATTTAATGGTATGGAGTTGGATCTTGTGTCGCTGATGGTTCTACATATACGATGAAGAATATTTCTGGG] [+] EMBL AK067021 [TGCTGTGCTGCTAGGGTTTAGGCGGCGGCGGCGGCGGCGGCGGCTGCGGCTTTCCGATTCCAATCCAACAAGAAGAAGATTCGGAGAGATTGCCGGCCATGTCTTCCACCGGTCGCCCCTACGGCCGTCGCGGCGGCGCCGCTCCCTCCTACGTGCCGCGCCCCCGCGCACCCAACCCCTCGCCATCCGCTCCCGCTCCCGCACGGCCGCCGCAGCAACTGCGTAAACCGGTGTTCACCACACCCTCACCGCCCGCGTCCTCTCCGCCCGCATCATCCTCGACAACCCTCCTCCCCGCGCTCGTCTCGCTGAGTGCCTCGTCGGCGACAACACCGGCACCGTCCTCTTCACCGCCCGCAACCAACAAGTTGACTTGGTGAAGCCAGGCACCACGGTCATCTTCCGCAATGCCAAGATTGACATGTTCAAGGGGACCATGAGGCTGGCAGTTGACAAATGGGGCCGGATCGAGGTGACGGACCCTGCCAGCTTTCAAGTTAAGGAAGACAACAACGTGTCGCTGGTCGAGTATGAGCTGGTGGATGTCGTCGACGAGGATTGACTACTTAGACTTTGATTGGCTCTCGGGCTGTGGACATAGATTTTTGATGCAGCGGTAGCAGTAGGTTCATCTTATCCTGGAAAGCTATTGAAAAGATTTGGAGCTGGTTATTACTTATGTACAGGGGAAGGTTCAACTGATGCTTTTGTGCAAGACCTGTTCTATCATTAGGTTTGGTTTATGAAATGTGTTGATGTTGCCGGTGGTACCTAAATCTAAATGTTGGCAAGCCTAGTGGACTTGTTTCTGTCAATTTAATGGTATGGAGTTGGATCTTGTGTCGCTGATGGTTCTACATATACGATGAAGAATATTTCTGGG] consensusID : consensus_9662#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 616 fasta sequence [CCGCCCGCGTCCTTTCCCCCGCATCATCTCGACACCCTCCTCCCCGCGCTCGTCTCGCTGAGTCCTCGTCGGCGACAACACCGGCACCGTCCTCTTCACCGCCCGCAACCAACAAGTTGACTTGGTGAAGCCAGGCACCACGGTCATCTTCCGCAATGCCAAGATTGACATGTTCAAGGGGACCATGAGGCTGGCAGTTGACAAATGGGCCGGATCGAGGTGACGGACCCTGCCAGCTTTCAAGTTAAGGAAAGACAACAACGGTGTCGCTGGTCGAGTTATGAGCTGGTGGAATGTTCGTCGACCGAGGGATTGACTACTTTAGACTTTGATTTGGCTTCTCGGGCTGTGGAACATTAAGATTTTTGAAGCCACCGTTAACCACTTAAGGTTCAATCTTTATGTCCTTGGGAAAGCCTTAATTGGAAAAATTTGGAACTTGGTTTAATACCTAAGTAATAAGGGAAAGTGTCCACTTGAAGCCTTTGGGCCAAGACCCGGTTTAACCATTAAGTTTGGTTTAATGAAAGTGAATTCCCGTTGTACCTAATTTAAATGGCCAACCTTATGGACCTGGTTTCAGGCCAATTAAGGTAATGAATTTGATTCTTGGCCA] [+] EMBL BI800149 [CCGCCCGCGTCCTTTCCCCCGCATCATCTCGACACCCTCCTCCCCGCGCTCGTCTCGCTGAGTCCTCGTCGGCGACAACACCGGCACCGTCCTCTTCACCGCCCGCAACCAACAAGTTGACTTGGTGAAGCCAGGCACCACGGTCATCTTCCGCAATGCCAAGATTGACATGTTCAAGGGGACCATGAGGCTGGCAGTTGACAAATGGGCCGGATCGAGGTGACGGACCCTGCCAGCTTTCAAGTTAAGGAAAGACAACAACGGTGTCGCTGGTCGAGTTATGAGCTGGTGGAATGTTCGTCGACCGAGGGATTGACTACTTTAGACTTTGATTTGGCTTCTCGGGCTGTGGAACATTAAGATTTTTGAAGCCACCGTTAACCACTTAAGGTTCAATCTTTATGTCCTTGGGAAAGCCTTAATTGGAAAAATTTGGAACTTGGTTTAATACCTAAGTAATAAGGGAAAGTGTCCACTTGAAGCCTTTGGGCCAAGACCCGGTTTAACCATTAAGTTTGGTTTAATGAAAGTGAATTCCCGTTGTACCTAATTTAAATGGCCAACCTTATGGACCTGGTTTCAGGCCAATTAAGGTAATGAATTTGATTCTTGGCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9662#0 GTGCTGTGCTGCTAGGGTTTAGGCGGCGGCGGCGGCGGCGGCGGCTGCGGCTTTCCGATT 60 consensus_9662#1 -TGCTGTGCTGCTAGGGTTTAGGCGGCGGCGGCGGCGGCGGCGGCTGCGGCTTTCCGATT 59 consensus_9662#2 ------------------------------------------------------------ consensus_9662#0 CCAATCCAACAAGAAGAAGATTCGGAGAGATTGCCGGCCATGTCTTCCACCGGTCGCCCC 120 consensus_9662#1 CCAATCCAACAAGAAGAAGATTCGGAGAGATTGCCGGCCATGTCTTCCACCGGTCGCCCC 119 consensus_9662#2 ------------------------------------------------------------ consensus_9662#0 TACGGCCGTCGCGGCGGCGCCGCTCCCTCCTACGTGCCGCGCCCCCGCGCACCCAACCCC 180 consensus_9662#1 TACGGCCGTCGCGGCGGCGCCGCTCCCTCCTACGTGCCGCGCCCCCGCGCACCCAACCCC 179 consensus_9662#2 ------------------------------------------------------------ consensus_9662#0 TCGCCATCCGCTCCCGCTCCCGCACGGCCGCCGCAGCAACTGCGTAAACCGGTGTTCACC 240 consensus_9662#1 TCGCCATCCGCTCCCGCTCCCGCACGGCCGCCGCAGCAACTGCGTAAACCGGTGTTCACC 239 consensus_9662#2 ------------------------------------------------------------ consensus_9662#0 ACCGTGGAGCGGCTGCGGCCCCAGAGCCACGGCCACACCCTCACCGCCCGCGTCCTCTCC 300 consensus_9662#1 AC----------------------------------ACCCTCACCGCCCGCGTCCTCTCC 265 consensus_9662#2 -------------------------------------------CCGCCCGCGTCCTTTCC 17 ************* *** consensus_9662#0 GCCCGCATCATCCTCGACAACCCTCCTCCCCGCGCTCGTCTCGCTGAGTGCCTCGTCGGC 360 consensus_9662#1 GCCCGCATCATCCTCGACAACCCTCCTCCCCGCGCTCGTCTCGCTGAGTGCCTCGTCGGC 325 consensus_9662#2 -CCCGCATCATC-TCGACA-CCCTCCTCCCCGCGCTCGTCTCGCTGAGT-CCTCGTCGGC 73 *********** ****** ***************************** ********** consensus_9662#0 GACAACACCGGCACCGTCCTCTTCACCGCCCGCAACCAACAAGTTGACTTGGTGAAGCCA 420 consensus_9662#1 GACAACACCGGCACCGTCCTCTTCACCGCCCGCAACCAACAAGTTGACTTGGTGAAGCCA 385 consensus_9662#2 GACAACACCGGCACCGTCCTCTTCACCGCCCGCAACCAACAAGTTGACTTGGTGAAGCCA 133 ************************************************************ consensus_9662#0 GGCACCACGGTCATCTTCCGCAATGCCAAGATTGACATGTTCAAGGGGACCATGAGGCTG 480 consensus_9662#1 GGCACCACGGTCATCTTCCGCAATGCCAAGATTGACATGTTCAAGGGGACCATGAGGCTG 445 consensus_9662#2 GGCACCACGGTCATCTTCCGCAATGCCAAGATTGACATGTTCAAGGGGACCATGAGGCTG 193 ************************************************************ consensus_9662#0 GCAGTTGACAAATGGGGCCGGATCGAGGTGACGGACCCTGCCAGCTTTCAAGTTAAGGAA 540 consensus_9662#1 GCAGTTGACAAATGGGGCCGGATCGAGGTGACGGACCCTGCCAGCTTTCAAGTTAAGGAA 505 consensus_9662#2 GCAGTTGACAAATGGG-CCGGATCGAGGTGACGGACCCTGCCAGCTTTCAAGTTAAGGAA 252 **************** ******************************************* consensus_9662#0 -GACAACAACG-TGTCGCTGGTCGAGT-ATGAGCTGGTGGA-TGT-CGTCGAC--GAGGA 593 consensus_9662#1 -GACAACAACG-TGTCGCTGGTCGAGT-ATGAGCTGGTGGA-TGT-CGTCGAC--GAGGA 558 consensus_9662#2 AGACAACAACGGTGTCGCTGGTCGAGTTATGAGCTGGTGGAATGTTCGTCGACCGAGGGA 312 ********** *************** ************* *** ******* *** consensus_9662#0 TTGACTACTT-AGACTTTGATTGG--CTCTCGGGCTGTGGA-CAT--AGATTTTTGATGC 647 consensus_9662#1 TTGACTACTT-AGACTTTGATTGG--CTCTCGGGCTGTGGA-CAT--AGATTTTTGATGC 612 consensus_9662#2 TTGACTACTTTAGACTTTGATTTGGCTTCTCGGGCTGTGGAACATTAAGATTTTTGAAGC 372 ********** *********** * ************** *** ********** ** consensus_9662#0 AGCGGT--AGCAGT--AGGTTCA----TCTTATCCT--GGAAAGCT---ATTGAAAAGAT 694 consensus_9662#1 AGCGGT--AGCAGT--AGGTTCA----TCTTATCCT--GGAAAGCT---ATTGAAAAGAT 659 consensus_9662#2 CACCGTTAACCACTTAAGGTTCAATCTTTATGTCCTTGGGAAAGCCTTAATTGGAAAAAT 432 * ** * ** * ******* * * **** ******* **** *** ** consensus_9662#0 TTGGAGCTGG--TTATTACTTATGTA-CAGGGGAAGGT--TCAACTGATGCTTTTGTGC- 748 consensus_9662#1 TTGGAGCTGG--TTATTACTTATGTA-CAGGGGAAGGT--TCAACTGATGCTTTTGTGC- 713 consensus_9662#2 TTGGAACTTGGTTTAATACCTAAGTAATAAGGGAAAGTGTCCACTTGAAGCCTTTGGGCC 492 ***** ** * *** *** ** *** * ***** ** ** *** ** **** ** consensus_9662#0 AAGACCTGTTCTA-TCATTAGGTTTGGTTTATGAAATGTGTTGATGTTGCCGGTGGTACC 807 consensus_9662#1 AAGACCTGTTCTA-TCATTAGGTTTGGTTTATGAAATGTGTTGATGTTGCCGGTGGTACC 772 consensus_9662#2 AAGACCCGGTTTAACCATTAAGTTTGGTTTAATGAAAGTG-----AATTCCCGTTGTACC 547 ****** * * ** ***** ********** ** *** * ** ** ***** consensus_9662#0 TAAATCTAAATGTTGGCAAGCCTAGTGGACTTG-TTTCTGTCAATTTAATGGTATGGAGT 866 consensus_9662#1 TAAATCTAAATGTTGGCAAGCCTAGTGGACTTG-TTTCTGTCAATTTAATGGTATGGAGT 831 consensus_9662#2 TAA-TTTAAAT---GGCCAACCTTATGGACCTGGTTTCAGGCCAATTAAGGTAATGAATT 603 *** * ***** *** * *** ***** ** **** * * * **** * *** * * consensus_9662#0 TGGATCTTGTGTCGCTGATGGTTCTACATATACGATGAAGAATATTTCTGGGATGTCTTA 926 consensus_9662#1 TGGATCTTGTGTCGCTGATGGTTCTACATATACGATGAAGAATATTTCTGGG-------- 883 consensus_9662#2 TGATTCTTG-GCCA---------------------------------------------- 616 ** ***** * * consensus_9662#0 CTACACCTTGTTGTGAGCTGCAATGTTTGCGTGCATGTTTAACAAAGCTGTGTTATATGT 986 consensus_9662#1 ------------------------------------------------------------ consensus_9662#2 ------------------------------------------------------------ consensus_9662#0 GT 988 consensus_9662#1 -- consensus_9662#2 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||