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Oryza sativa
cluster # 9666 cluster # 9666       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9666#0 length = 1210 sequences # 5  
consensus_9666#1 length = 236 sequences # 1  

consensusID : consensus_9666#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1210
fasta sequence
                              [AAATAGCTCACCAGTTCTGACAACGGCGTGAGCAGACATCACCTGATCTCACCAAGAACATGGCCGCCGGCGAGAGGCCGGCGA-CCATGCGCGCCGTCCAGTACAGTGGCTACGGCGGCGGCGCCGCTGCCCTTAAGTTTGTGGAAATCCCTGTTCCTTCTGTGAAGAAGGACGAAGTTCTCGTAAAAGTAGAAGCTGCAAGCATCAATCAATCCGATTTGATGACTCAGAAAGGGATGATGCGCCCCTTTCACCCGAAATTTCCATTTATTCCAGTAAATAATGTGTCCGGAGAGATCGTTGAGGTTGGCTCTGCAGTACGCGAGTTCAAAGTTGGTGATAAAGTTGTCTCCAAACTAGACTTCTGGACAGCAGGGGGCCTTGCTGAGTACGTGGCCACATCGGACAAGCTCACCGTCGCTCGCCCTGCCGGAATCTCCGCCGCTGACGCGGCGGGTGTGCCCGTCGCCGGCCTGACAGCGCTCCAGGCGCTCAAGGCCATCGGCACCAAGTTCGACGGCTCGGGCACCAGCGGCGGCGCCGACGTTCTGATCACCGCGGCCTCCAGCGGCGTGGGCACGTACGCCGTCCAGCTCGCCAAGCTCGGCAACCACCGCGTCACCGCCACATGCGGCGCGCGCAACCTCGGCCTCGTCGCTGGCCTCGGCGCCGACGGGGTCCTCGACTACAAGACCCCGGAGGGGGCCGCGCTGTCGAGCCCCTCCGGCAAGAAGTACGACTACATCGTCAACATCAGTAACAAGAACAAGTGGTCGGTGTTCAAGCCGCGCCTGAGCAGCCATGGCAGGGTCGTCGACGTCGCCCCCAACTTCGGCAACTTCGTGGCGTCGGTGGTGACGCTGTTCTCCCGGAGGAAGAAGCTGTCGCTGGTGAGCCTGAAGATGAGCAAGGAGGACCTGGGGTTGCTGCTCGAGCTGATGCGGGAAGGGAAGCTCAGGACGGTGGTCGACTCGCGGCATCCGTTCGAGAAGGCGGCGGACGCATGGGCGAGGAGCCTCAGCGGCCATGCCACTGGAAAGGTCATCGTGGAGATGTGAGATTAAGATTCAGCGATGGCTCTAAGCTTTGCTGTCATTTAAATGTATGTGCTATTACCATA-TTTGATCATGCCATCGGTACACAACAATCAATCCGTACCCCTCATCTGCGCTGGTTAAAAAAATACTATATATGATTACTATTATATTAA]

[+] EMBL AK069384             [AAATAGCTCACCAGTTCTGACAACGGCGTGAGCAGACATCACCTGATCTCACCAAGAACATGGCCGCCGGCGAGAGGCCGGCGA CCATGCGCGCCGTCCAGTACAGTGGCTACGGCGGCGGCGCCGCTGCCCTTAAGTTTGTGGAAATCCCTGTTCCTTCTGTGAAGAAGGACGAAGTTCTCGTAAAAGTAGAAGCTGCAAGCATCAATCAATCCGATTTGATGACTCAGAAAGGGATGATGCGCCCCTTTCACCCGAAATTTCCATTTATTCCAGTAAATAATGTGTCCGGAGAGATCGTTGAGGTTGGCTCTGCAGTACGCGAGTTCAAAGTTGGTGATAAAGTTGTCTCCAAACTAGACTTCTGGACAGCAGGGGGCCTTGCTGAGTACGTGGCCACATCGGACAAGCTCACCGTCGCTCGCCCTGCCGGAATCTCCGCCGCTGACGCGGCGGGTGTGCCCGTCGCCGGCCTGACAGCGCTCCAGGCGCTCAAGGCCATCGGCACCAAGTTCGACGGCTCGGGCACCAGCGGCGGCGCCGACGTTCTGATCACCGCGGCCTCCAGCGGCGTGGGCACGTACGCCGTCCAGCTCGCCAAGCTCGGCAACCACCGCGTCACCGCCACATGCGGCGCGCGCAACCTCGGCCTCGTCGCTGGCCTCGGCGCCGACGGGGTCCTCGACTACAAGACCCCGGAGGGGGCCGCGCTGTCGAGCCCCTCCGGCAAGAAGTACGACTACATCGTCAACATCAGTAACAAGAACAAGTGGTCGGTGTTCAAGCCGCGCCTGAGCAGCCATGGCAGGGTCGTCGACGTCGCCCCCAACTTCGGCAACTTCGTGGCGTCGGTGGTGACGCTGTTCTCCCGGAGGAAGAAGCTGTCGCTGGTGAGCCTGAAGATGAGCAAGGAGGACCTGGGGTTGCTGCTCGAGCTGATGCGGGAAGGGAAGCTCAGGACGGTGGTCGACTCGCGGCATCCGTTCGAGAAGGCGGCGGACGCATGGGCGAGGAGCCTCAGCGGCCATGCCACTGGAAAGGTCATCGTGGAGATGTGAGATTAAGATTCAGCGATGGCTCTAAGCTTTGCTGTCATTTAAATGTATGTGCTATTACCATA TTTGATCATGCCATCGGTA                                                                       ]
[+] EMBL C73093               [             GTTCTGACAACGGCGTGA NAGACATCACCTGATCTCACCAAGAANATGGCCGCCGGCGAGAGGCCGG GANCCATGCGCGCCGTCCAGTACAGTGGCTACGGCGGCGGCG CGTNGCCCTTAAGTTTGTGGAAATCCCTGTTCCTTCTGTGAAGAAGGACGAA TTCTCGTAAAAGTAGAAGCTGCAA CATCAATCAATCCGATTTGATGACTCAGAAAGGGATGATGCGCCCCTTTCACCCGAAATTTCCATTTATTCCAGTAAATAATGTGTCCGGAGAGATCGTTGAGGTTGGCTCTGCAGTACGCGAGTTC AANTTGGTGAT AAGTTGTCTCC AACTAG NTTCTGGACA CAGGGGG CTTGCTGA TACGTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CA754889             [                 TGACAACGGCGTGAGCAGACATCACCTGATCTCACCAAGAACATGGCCGCCGGCGAGAGGCCGGCGA CCATGCGCGCCGTCCAGTACAGTGGCTACGGCGGCGGCGCCGCTGCCCTTAAGTTTGTGGAAATCCCTGTTCCTTCTGTGAAGAAGGACGAAGTTCTCGTAAAAGTAGAAGCTGCAAGCATCAATCAATCCGATTTGATGACTCAGAAAGGGATGATGCGCCCCTTTCACCCGAAATTTCCATTTATTCCAGTAAATAATGTGTCCGGAGAGATCGTTGAGGTTGGCTCTGCAGTACGCGAGTTCAAAGTTGGTGATAAAGTTGTCTCCNAACTAGACTTCTGGACAGCAGGGGGCCTTGCTGAGTACGTGGCCACATCGGACAAGCTCACCGTCGCTCGCCCTGCCGGAATCTCCGCCGCTGACGCGGCGGGTGTGCCCGTCGCCGGCCTGACAGCGCTCCAGGCGCTCAAGGCCATCGGCACCAAGTTCGACGGCTCGGGCACCAGCGGCGGCGCCGACGTTCTGATCACCGCGGCCTCCAGCGGCGTGGGCACGTACGCCGTCCAGCTCGCCCAGCTCGGCAACCACCGCGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU184402             [                                                                                                                                                                                                                                                                                                                                                                                                    AGTACGTGGCCACATCGGACAAGCTCACCGTCGCTCGCCCTGCCGGAATCTCCGCCGCTGACGCGGCGGGTGTGCCCGTCGCCGGCCTGACAGCGCTCCAGGCGCTCAAGGCCATCGGCACCAAGTTCGACGGCTCGGGCACCAGCGGCGGCGCCGACGTTCTGATCACCGCGGCCTCCAGCGGCGTGGGCACGTACGCCGTCCAGCTCGCCAAGCTCGGCAACCACCGCGTCACCGCCACATGCGGCGCGCGCAACCTCGGCCTCGTCGCTGGCCTCGGCGCCGACGAGGTCCTCGACTACAAGACCCCGGAGGGGGCCGCGCTGTCGAGCCCCTCCGGCAAGAAGTACGACTACATCGTCAACATCAGTAACAAGAACAAGTGGTCGGTGTTCAAGCCGCGCCTGAGCAGCCATG                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CA767241             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GTTGCTGCTCGAGCTGATGCGGGAAGGGAAGCTCAGGACGGTGGTCGACTCGCGGCATCCGTTCGAGAAGGCGGCGGACGCATGGGCGAGGAGCCTCAGCGGCCATGCCACTGGAAAGGTCATCGTGGAGATGTGAGATTAAGATTCAGCGATGGCTCTAAGCTTTGCTGTCATTTAAATGTATGTGCTATTACCATATTTTGATCATGCCATCGGTACACAACAATCAATCCGTACCCCTCATCTGCGCTGGTTAAAAAAATACTATATATGATTACTATTATATTAA]


>consensus_9666#0 AAATAGCTCACCAGTTCTGACAACGGCGTGAGCAGACATCACCTGATCTCACCAAGAACA TGGCCGCCGGCGAGAGGCCGGCGACCATGCGCGCCGTCCAGTACAGTGGCTACGGCGGCG GCGCCGCTGCCCTTAAGTTTGTGGAAATCCCTGTTCCTTCTGTGAAGAAGGACGAAGTTC TCGTAAAAGTAGAAGCTGCAAGCATCAATCAATCCGATTTGATGACTCAGAAAGGGATGA TGCGCCCCTTTCACCCGAAATTTCCATTTATTCCAGTAAATAATGTGTCCGGAGAGATCG TTGAGGTTGGCTCTGCAGTACGCGAGTTCAAAGTTGGTGATAAAGTTGTCTCCAAACTAG ACTTCTGGACAGCAGGGGGCCTTGCTGAGTACGTGGCCACATCGGACAAGCTCACCGTCG CTCGCCCTGCCGGAATCTCCGCCGCTGACGCGGCGGGTGTGCCCGTCGCCGGCCTGACAG CGCTCCAGGCGCTCAAGGCCATCGGCACCAAGTTCGACGGCTCGGGCACCAGCGGCGGCG CCGACGTTCTGATCACCGCGGCCTCCAGCGGCGTGGGCACGTACGCCGTCCAGCTCGCCA AGCTCGGCAACCACCGCGTCACCGCCACATGCGGCGCGCGCAACCTCGGCCTCGTCGCTG GCCTCGGCGCCGACGGGGTCCTCGACTACAAGACCCCGGAGGGGGCCGCGCTGTCGAGCC CCTCCGGCAAGAAGTACGACTACATCGTCAACATCAGTAACAAGAACAAGTGGTCGGTGT TCAAGCCGCGCCTGAGCAGCCATGGCAGGGTCGTCGACGTCGCCCCCAACTTCGGCAACT TCGTGGCGTCGGTGGTGACGCTGTTCTCCCGGAGGAAGAAGCTGTCGCTGGTGAGCCTGA AGATGAGCAAGGAGGACCTGGGGTTGCTGCTCGAGCTGATGCGGGAAGGGAAGCTCAGGA CGGTGGTCGACTCGCGGCATCCGTTCGAGAAGGCGGCGGACGCATGGGCGAGGAGCCTCA GCGGCCATGCCACTGGAAAGGTCATCGTGGAGATGTGAGATTAAGATTCAGCGATGGCTC TAAGCTTTGCTGTCATTTAAATGTATGTGCTATTACCATATTTGATCATGCCATCGGTAC ACAACAATCAATCCGTACCCCTCATCTGCGCTGGTTAAAAAAATACTATATATGATTACT ATTATATTAA



consensusID : consensus_9666#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 236
fasta sequence
                              [GGCGTGAGCAGACATCACCTGATCTCACCAAGAACATGGTCCGTCGGCGAGAGGCCGGTGACCATGCGCGCCGTTCAGTACAGTGGTTACGGTGGTGGTGTTGTTGTTTTTAAGTTTTGTGGTATATTTTGTTTCTTTTGTGTTGTTGGTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]

[+] EMBL CA758612             [GGCGTGAGCAGACATCACCTGATCTCACCAAGAACATGGTCCGTCGGCGAGAGGCCGGTGACCATGCGCGCCGTTCAGTACAGTGGTTACGGTGGTGGTGTTGTTGTTTTTAAGTTTTGTGGTATATTTTGTTTCTTTTGTGTTGTTGGTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]


>consensus_9666#1 GGCGTGAGCAGACATCACCTGATCTCACCAAGAACATGGTCCGTCGGCGAGAGGCCGGTG ACCATGCGCGCCGTTCAGTACAGTGGTTACGGTGGTGGTGTTGTTGTTTTTAAGTTTTGT GGTATATTTTGTTTCTTTTGTGTTGTTGGTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9666#0      AAATAGCTCACCAGTTCTGACAACGGCGTGAGCAGACATCACCTGATCTCACCAAGAACA 60
consensus_9666#1      ------------------------GGCGTGAGCAGACATCACCTGATCTCACCAAGAACA 36
                                              ************************************

consensus_9666#0      TGG-CCGCCGGCGAGAGGCCGGCGACCATGCGCGCCGTCCAGTACAGTGGCTACGGCGGC 119
consensus_9666#1      TGGTCCGTCGGCGAGAGGCCGGTGACCATGCGCGCCGTTCAGTACAGTGGTTACGGTGGT 96
                      *** *** ************** *************** *********** ***** ** 

consensus_9666#0      GGCGCCGCTGCCCTTAAGTTT-GTGGAAATCCCTGTTCCTTCTGTGAAGAAGGACGAAGT 178
consensus_9666#1      GGTGTTGTTGTTTTTAAGTTTTGTGGTATATTTTGTTTCTTTTGTGTTGTTGGTCGNNNN 156
                      ** *  * **   ******** **** *     **** *** ****  *  ** **    

consensus_9666#0      TCTCGTAAAAGTAGAAGCTGCAAGCATCAATCAATCCGATTTGATGACTCAGAAAGGGAT 238
consensus_9666#1      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 216
                                                                                  

consensus_9666#0      GATGCGCCCCTTTCACCCGAAATTTCCATTTATTCCAGTAAATAATGTGTCCGGAGAGAT 298
consensus_9666#1      NNNNNNNNNNNNNNNNNNNN---------------------------------------- 236
                                                                                  

consensus_9666#0      CGTTGAGGTTGGCTCTGCAGTACGCGAGTTCAAAGTTGGTGATAAAGTTGTCTCCAAACT 358
consensus_9666#1      ------------------------------------------------------------
                                                                                  

consensus_9666#0      AGACTTCTGGACAGCAGGGGGCCTTGCTGAGTACGTGGCCACATCGGACAAGCTCACCGT 418
consensus_9666#1      ------------------------------------------------------------
                                                                                  

consensus_9666#0      CGCTCGCCCTGCCGGAATCTCCGCCGCTGACGCGGCGGGTGTGCCCGTCGCCGGCCTGAC 478
consensus_9666#1      ------------------------------------------------------------
                                                                                  

consensus_9666#0      AGCGCTCCAGGCGCTCAAGGCCATCGGCACCAAGTTCGACGGCTCGGGCACCAGCGGCGG 538
consensus_9666#1      ------------------------------------------------------------
                                                                                  

consensus_9666#0      CGCCGACGTTCTGATCACCGCGGCCTCCAGCGGCGTGGGCACGTACGCCGTCCAGCTCGC 598
consensus_9666#1      ------------------------------------------------------------
                                                                                  

consensus_9666#0      CAAGCTCGGCAACCACCGCGTCACCGCCACATGCGGCGCGCGCAACCTCGGCCTCGTCGC 658
consensus_9666#1      ------------------------------------------------------------
                                                                                  

consensus_9666#0      TGGCCTCGGCGCCGACGGGGTCCTCGACTACAAGACCCCGGAGGGGGCCGCGCTGTCGAG 718
consensus_9666#1      ------------------------------------------------------------
                                                                                  

consensus_9666#0      CCCCTCCGGCAAGAAGTACGACTACATCGTCAACATCAGTAACAAGAACAAGTGGTCGGT 778
consensus_9666#1      ------------------------------------------------------------
                                                                                  

consensus_9666#0      GTTCAAGCCGCGCCTGAGCAGCCATGGCAGGGTCGTCGACGTCGCCCCCAACTTCGGCAA 838
consensus_9666#1      ------------------------------------------------------------
                                                                                  

consensus_9666#0      CTTCGTGGCGTCGGTGGTGACGCTGTTCTCCCGGAGGAAGAAGCTGTCGCTGGTGAGCCT 898
consensus_9666#1      ------------------------------------------------------------
                                                                                  

consensus_9666#0      GAAGATGAGCAAGGAGGACCTGGGGTTGCTGCTCGAGCTGATGCGGGAAGGGAAGCTCAG 958
consensus_9666#1      ------------------------------------------------------------
                                                                                  

consensus_9666#0      GACGGTGGTCGACTCGCGGCATCCGTTCGAGAAGGCGGCGGACGCATGGGCGAGGAGCCT 1018
consensus_9666#1      ------------------------------------------------------------
                                                                                  

consensus_9666#0      CAGCGGCCATGCCACTGGAAAGGTCATCGTGGAGATGTGAGATTAAGATTCAGCGATGGC 1078
consensus_9666#1      ------------------------------------------------------------
                                                                                  

consensus_9666#0      TCTAAGCTTTGCTGTCATTTAAATGTATGTGCTATTACCATATTTGATCATGCCATCGGT 1138
consensus_9666#1      ------------------------------------------------------------
                                                                                  

consensus_9666#0      ACACAACAATCAATCCGTACCCCTCATCTGCGCTGGTTAAAAAAATACTATATATGATTA 1198
consensus_9666#1      ------------------------------------------------------------
                                                                                  

consensus_9666#0      CTATTATATTAA 1210
consensus_9666#1      ------------
                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)